Structural model of a voltage-gated potassium channel based on spectroscopic data

2001 ◽  
Vol 29 (4) ◽  
pp. 589-593 ◽  
Author(s):  
P. I. Haris
Keyword(s):  
Potassium Channel ◽  
Structural Model ◽  
Structural Data ◽  
Theoretical Models ◽  
Shaker Potassium Channel ◽  
Voltage Gated ◽  
Folded Structure ◽  
Membrane Spanning ◽  
Voltage Gated Ion Channels ◽  
Pore Domain

It is estimated that membrane proteins comprise as much as 30% of most genomes. Yet our knowledge of membrane-protein folding is still in its infancy. Consequently, there is a great need for developing approaches that can further advance our understanding of how peptides and proteins interact with membranes and thereby attain their folded structure. An approach that we have been exploring involves dissecting voltage-gated ion channels into simple peptide domains for the purpose of determining their structure in different media using physical techniques. We have synthesized peptides corresponding to the six membrane-spanning segments, as well as the pore domain, of the Shaker channel and characterized their secondary structures. From these studies we have developed a model for the transmembrane structure of the Shaker potassium channel that is constructed from α-helices. The hard structural data obtained from these studies lends support to the recent theoretical models of this channel protein that have been developed by others.

scholarly journals The trajectory of discrete gating charges in a voltage-gated potassium channel

2020 ◽  
Author(s):  
Michael F. Priest ◽  
Elizabeth E.L. Lee ◽  
Francisco Bezanilla
Keyword(s):  
Potassium Channel ◽  
Voltage Sensor ◽  
Drive Voltage ◽  
Shaker Potassium Channel ◽  
Voltage Gated ◽  
Charged Amino Acids ◽  
Voltage Gated Ion Channels ◽  
Sensing Membrane ◽  
Positively Charged ◽  
Gating Charges

AbstractPositively-charged amino acids respond to membrane potential changes to drive voltage sensor movement in voltage-gated ion channels, but determining the trajectory of voltage sensor gating charges has proven difficult. We optically tracked the movement of the two most extracellular charged residues (R1, R2) in the Shaker potassium channel voltage sensor using a fluorescent positively-charged bimane derivative (qBBr) that is strongly quenched by tryptophan. By individually mutating residues to tryptophan within the putative trajectory of gating charges, we observed that the charge pathway during activation is a rotation and a tilted translation that differs between R1 and R2 and is distinct from their deactivation pathway. Tryptophan-induced quenching of qBBr also indicates that a crucial residue of the hydrophobic plug is linked to the Cole-Moore shift through its interaction with R1. Finally, we show that this approach extends to additional voltage-sensing membrane proteins using the Ciona intestinalis voltage sensitive phosphatase (CiVSP).

scholarly journals Tracking the movement of discrete gating charges in a voltage-gated potassium channel

eLife ◽  
2021 ◽  
Vol 10 ◽  
Author(s):  
Michael F Priest ◽  
Elizabeth EL Lee ◽  
Francisco Bezanilla
Keyword(s):  
Potassium Channel ◽  
Voltage Sensor ◽  
Charge Motion ◽  
Shaker Potassium Channel ◽  
Voltage Gated ◽  
Charged Amino Acids ◽  
Voltage Gated Ion Channels ◽  
Sensing Membrane ◽  
Positively Charged ◽  
Gating Charges

Positively-charged amino acids respond to membrane potential changes to drive voltage sensor movement in voltage-gated ion channels, but determining the displacements of voltage sensor gating charges has proven difficult. We optically tracked the movement of the two most extracellular charged residues (R1, R2) in the Shaker potassium channel voltage sensor using a fluorescent positively-charged bimane derivative (qBBr) that is strongly quenched by tryptophan. By individually mutating residues to tryptophan within the putative pathway of gating charges, we observed that the charge motion during activation is a rotation and a tilted translation that differs between R1 and R2. Tryptophan-induced quenching of qBBr also indicates that a crucial residue of the hydrophobic plug is linked to the Cole-Moore shift through its interaction with R1. Finally, we show that this approach extends to additional voltage-sensing membrane proteins using the Ciona intestinalis voltage sensitive phosphatase (CiVSP) (Murata et al., 2005a).

scholarly journals The isolated voltage sensing domain of the Shaker potassium channel forms a voltage-gated cation channel

eLife ◽  
2016 ◽  
Vol 5 ◽  
Author(s):  
Juan Zhao ◽  
Rikard Blunck
Keyword(s):  
Transmembrane Helix ◽  
Voltage Sensing ◽  
Shaker Potassium Channel ◽  
Voltage Gated ◽  
Kv Channel ◽  
C Terminus ◽  
Ion Conducting ◽  
Voltage Gated Ion Channels ◽  
Voltage Sensing Domain ◽  
Pore Domain

Domains in macromolecular complexes are often considered structurally and functionally conserved while energetically coupled to each other. In the modular voltage-gated ion channels the central ion-conducting pore is surrounded by four voltage sensing domains (VSDs). Here, the energetic coupling is mediated by interactions between the S4-S5 linker, covalently linking the domains, and the proximal C-terminus. In order to characterize the intrinsic gating of the voltage sensing domain in the absence of the pore domain, the Shaker Kv channel was truncated after the fourth transmembrane helix S4 (Shaker-iVSD). Shaker-iVSD showed significantly altered gating kinetics and formed a cation-selective ion channel with a strong preference for protons. Ion conduction in Shaker-iVSD developed despite identical primary sequence, indicating an allosteric influence of the pore domain. Shaker-iVSD also displays pronounced 'relaxation'. Closing of the pore correlates with entry into relaxation suggesting that the two processes are energetically related.

scholarly journals Position and motions of the S4 helix during opening of the Shaker potassium channel

2010 ◽  
Vol 136 (6) ◽  
pp. 629-644 ◽  
Author(s):  
L. Revell Phillips ◽  
Kenton J. Swartz
Keyword(s):  
Potassium Channel ◽  
Open Channels ◽  
Shaker Potassium Channel ◽  
Voltage Sensors ◽  
Voltage Gated ◽  
Kv Channels ◽  
Close Proximity ◽  
Pore Domain ◽  
Significant Distance ◽  
Average Position

The four voltage sensors in voltage-gated potassium (Kv) channels activate upon membrane depolarization and open the pore. The location and motion of the voltage-sensing S4 helix during the early activation steps and the final opening transition are unresolved. We studied Zn2+ bridges between two introduced His residues in Shaker Kv channels: one in the R1 position at the outer end of the S4 helix (R362H), and another in the S5 helix of the pore domain (A419H or F416H). Zn2+ bridges readily form between R362H and A419H in open channels after the S4 helix has undergone its final motion. In contrast, a distinct bridge forms between R362H and F416H after early S4 activation, but before the final S4 motion. Both bridges form rapidly, providing constraints on the average position of S4 relative to the pore. These results demonstrate that the outer ends of S4 and S5 remain in close proximity during the final opening transition, with the S4 helix translating a significant distance normal to the membrane plane.

scholarly journals Molecular Determinants of μ-Conotoxin KIIIA Interaction with the Voltage-Gated Sodium Channel Nav1.7

2019 ◽  
Author(s):  
Ian H. Kimball ◽  
Phuong T. Nguyen ◽  
Baldomero M. Olivera ◽  
Jon T. Sack ◽  
Vladimir Yarov-Yarovoy
Keyword(s):  
Computational Modeling ◽  
Rational Design ◽  
Structural Model ◽  
Critical Role ◽  
Structural Data ◽  
Molecular Probes ◽  
Integrative Approach ◽  
In Silico Docking ◽  
Voltage Gated ◽  
Dynamics Simulations

AbstractThe voltage-gated sodium (Nav) channel subtype Nav1.7 plays a critical role in pain signaling, making it an important drug target. Here we studied the molecular interactions between μ-conotoxin KIIIA (KIIIA) and the human Nav1.7 channel (hNav1.7). We developed a structural model of hNav1.7 using Rosetta computational modeling and performed in silico docking of KIIIA using RosettaDock to predict residues forming specific pairwise contacts between KIIIA and hNav1.7. We experimentally validated these contacts using mutant cycle analysis. Comparison between our KIIIA-hNav1.7 model and the recently published cryo-EM structure of KIIIA-hNav1.2 revealed key similarities and differences between channel subtypes with potential implications for the molecular mechanism of toxin block. Our integrative approach, combining structural data with computational modeling, experimental validation, and molecular dynamics simulations will be useful for engineering molecular probes to study Nav channel function, and for rational design of novel biologics targeting specific Nav channels.

scholarly journals Dynamics of Pore Domain Affected by Single Mutations in S4 Segment of Shaker Potassium Channel

2019 ◽  
Vol 116 (3) ◽  
pp. 101a
Author(s):  
Carlos Alberto ◽  
Z. Bassetto Jr ◽  
Joao Luis Carvalho-de-Souza ◽  
Francisco Bezanilla
Keyword(s):  
Potassium Channel ◽  
Shaker Potassium Channel ◽  
Pore Domain ◽  
S4 Segment

Genetic mapping of the voltage-gated shaker potassium channel beta subunit Kcnab1 to mouse Chromosome 3

1998 ◽  
Vol 9 (3) ◽  
pp. 260-260 ◽  
Author(s):  
J. M. Jones ◽  
E. Bentley ◽  
M. H. Meisler ◽  
Susan M. Darling
Keyword(s):  
Genetic Mapping ◽  
Potassium Channel ◽  
Mouse Chromosome ◽  
Beta Subunit ◽  
Chromosome 3 ◽  
Shaker Potassium Channel ◽  
Voltage Gated

scholarly journals A novel Hv1 inhibitor reveals a new mechanism of inhibition of a voltage-sensing domain

2021 ◽  
Vol 153 (9) ◽  
Author(s):  
Chang Zhao ◽  
Liang Hong ◽  
Saleh Riahi ◽  
Victoria T. Lim ◽  
Douglas J. Tobias ◽  
...  
Keyword(s):  
Md Simulations ◽  
Binding Pocket ◽  
Proton Channel ◽  
Voltage Sensing ◽  
Voltage Gated ◽  
Functional Studies ◽  
Mechanism Of Inhibition ◽  
Target Binding ◽  
Voltage Gated Ion Channels ◽  
Pore Domain

Voltage-gated sodium, potassium, and calcium channels consist of four voltage-sensing domains (VSDs) that surround a central pore domain and transition from a down state to an up state in response to membrane depolarization. While many types of drugs bind pore domains, the number of organic molecules known to bind VSDs is limited. The Hv1 voltage-gated proton channel is made of two VSDs and does not contain a pore domain, providing a simplified model for studying how small ligands interact with VSDs. Here, we describe a ligand, named HIF, that interacts with the Hv1 VSD in the up and down states. We find that HIF rapidly inhibits proton conduction in the up state by blocking the open channel, as previously described for 2-guanidinobenzimidazole and its derivatives. HIF, however, interacts with a site slowly accessible in the down state. Functional studies and MD simulations suggest that this interaction traps the compound in a narrow pocket lined with charged residues within the VSD intracellular vestibule, which results in slow recovery from inhibition. Our findings point to a “wrench in gears” mechanism whereby side chains within the binding pocket trap the compound as the teeth of interlocking gears. We propose that the use of screening strategies designed to target binding sites with slow accessibility, similar to the one identified here, could lead to the discovery of new ligands capable of interacting with VSDs of other voltage-gated ion channels in the down state.

scholarly journals Voltage-gated calcium channels in GtoPdb v.2021.2

2021 ◽  
Vol 2021 (2) ◽  
Author(s):  
William A. Catterall ◽  
Edward Perez-Reyes ◽  
Terrance P. Snutch ◽  
Jörg Striessnig
Keyword(s):  
High Voltage ◽  
Low Voltage ◽  
Transmembrane Domains ◽  
Voltage Gated ◽  
Voltage Dependent ◽  
Alternatively Spliced ◽  
Membrane Spanning ◽  
Voltage Gated Ion Channels ◽  
Ca2 Channels ◽  
Α1 Subunit

Calcium (Ca2+) channels are voltage-gated ion channels present in the membrane of most excitable cells. The nomenclature for Ca2+channels was proposed by [127] and approved by the NC-IUPHAR Subcommittee on Ca2+ channels [70]. Most Ca2+ channels form hetero-oligomeric complexes. The α1 subunit is pore-forming and provides the binding site(s) for practically all agonists and antagonists. The 10 cloned α1-subunits can be grouped into three families: (1) the high-voltage activated dihydropyridine-sensitive (L-type, CaV1.x) channels; (2) the high- to moderate-voltage activated dihydropyridine-insensitive (CaV2.x) channels and (3) the low-voltage-activated (T-type, CaV3.x) channels. Each α1 subunit has four homologous repeats (I-IV), each repeat having six transmembrane domains and a pore-forming region between transmembrane domains S5 and S6. Voltage-dependent gating is driven by the membrane spanning S4 segment, which contains highly conserved positive charges that respond to changes in membrane potential. All of the α1-subunit genes give rise to alternatively spliced products. At least for high-voltage activated channels, it is likely that native channels comprise co-assemblies of α1, β and α2-δ subunits. The γ subunits have not been proven to associate with channels other than the α1s skeletal muscle Cav1.1 channel. The α2-δ1 and α2-δ2 subunits bind gabapentin and pregabalin.

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