Ab initio studies on amides: conformational preferences of diacetamide and barriers to interconversion of the conformers

1980 ◽  
Vol 33 (11) ◽  
pp. 2337 ◽  
Author(s):  
L Radom ◽  
NV Riggs
Keyword(s):  
Hydrogen Atom ◽  
Ab Initio ◽  
Internal Rotation ◽  
Model Systems ◽  
Methyl Groups ◽  
Electrostatic Repulsion ◽  
Conformational Preferences ◽  
Out Of Plane ◽  
Model Transition ◽  
Good Agreement

Diacetamide, like other diacylamines, is capable of existing in three basic conformations about the N-C bonds. Optimization (STO-3G) of model systems in which all first-row atoms and the amido hydrogen atom are held coplanar predicts that the E,Z conformer (3) is of lowest energy, the Z,Z conformer (2) of somewhat higher energy (4.2 kJ mol-1), and the E,E conformer (1) of highest energy (23.6 kJ mol-1); 4-31G evaluation of the energies suggests that (1) and (2) are each of higher energy than (3) by 27-28 kJ mol-1. It is suggested that (2) is destabilized with respect to (3) by electrostatic repulsion of the two negatively charged oxygen atoms whereas destabilization of (1) is due to substantial methyl-methyl steric interactions as reflected in the very wide <CNC (136°); the energy of (1) is, however, raised by out-of-plane or rotational movements of the methyl groups, i.e., the preferred structure (excluding methyl hydrogens) is planar. The calculated height of the barrier to internal rotation of (3) by either of two model transition states is 41-45 kJ mol-1, in good agreement with an experimental value of 45.2 kJ mol-1 in solution at -60°.

Ab initio studies on amides: conformational preferences of formimide and barriers to interconversion of the conformers

1980 ◽  
Vol 33 (8) ◽  
pp. 1635 ◽  
Author(s):  
L Radom ◽  
NV Riggs
Keyword(s):  
Ground State ◽  
Room Temperature ◽  
Geometry Optimization ◽  
Basis Set ◽  
Partial Geometry ◽  
Electrostatic Repulsion ◽  
Full Geometry Optimization ◽  
Vapour State ◽  
Conformational Preferences ◽  
Model Transition

Formimide (diformamide), the parent of the diacylamines, is capable of existing in three basic ground-state conformations about the N-C bonds. Full geometry optimization with the STO-3G basis set predicts that all three conformers are fully coplanar, that the E,E (1) and E,Z(3) conformers are of similar energy, and that the Z,Z (2) conformer is of somewhat higher energy (by 11 kJ mol-1); 4-31G evaluation of the energies suggests that (2) is by far the least stable and that (1) is of higher energy than (3) by 6.5 kJ mol-1. Analysis of the calculated charge distribution suggests that (2) is destabilized by electrostatic repulsion. These results are consistent with experimental conclusions that planar (3) is strongly preferred in the vapour state at room temperature and that (2) has not been observed in the vapour state or in solution. Partial geometry optimization with the STO-3G basis set of model transition states for internal rotation suggests a barrier height of 52 kJ mol-1 (72 kJ mol-1 when evaluated with the 4-31G basis set) for the conversion (3) → (1).

scholarly journals Dynamics Studies of Nitrogen Interstitial in GaN from Ab Initio Calculations

Materials ◽  
2020 ◽  
Vol 13 (16) ◽  
pp. 3627
Author(s):  
Huan He ◽  
Wenbo Liu ◽  
Pengbo Zhang ◽  
Wenlong Liao ◽  
Dayin Tong ◽  
...  
Keyword(s):  
Optical Properties ◽  
Ab Initio Calculations ◽  
Ab Initio ◽  
Separation Distance ◽  
Semiconductor Materials ◽  
Stable Configuration ◽  
Anisotropic Behavior ◽  
Out Of Plane ◽  
First Time ◽  
Good Agreement

Understanding the properties of defects is crucial to design higher performance semiconductor materials because they influence the electronic and optical properties significantly. Using ab initio calculations, the dynamics properties of nitrogen interstitial in GaN material, including the configuration, migration, and interaction with vacancy were systematically investigated in the present work. By introducing different sites of foreign nitrogen atom, the most stable configuration of nitrogen interstitial was calculated to show a threefold symmetry in each layer and different charge states were characterized, respectively. In the researches of migration, two migration paths, in-plane and out-of-plane, were considered. With regards to the in-plane migration, an intermediated rotation process was observed first time. Due to this rotation behavior, two different barriers were demonstrated to reveal that the migration is an anisotropic behavior. Additionally, charged nitrogen Frenkel pair was found to be a relatively stable defect complex and its well separation distance was about 3.9 Å. Part of our results are in good agreement with the experimental results, and our work provides underlying insights of the identification and dynamics of nitrogen interstitial in GaN material. This study of defects in GaN material is useful to establish a more complete theory and improve the performance of GaN-based devices.

Ab initio studies on amides: triformamide

1981 ◽  
Vol 34 (1) ◽  
pp. 7
Author(s):  
L Radom ◽  
NV Riggs
Keyword(s):  
Double Bond ◽  
Transition State ◽  
Ab Initio ◽  
Internal Rotation ◽  
Direct Observation ◽  
Ground State ◽  
Basis Set ◽  
Model Transition ◽  
Bond Character ◽  
Complete Optimization

Complete optimization with the STO-3G basis set of the geometries of the planar ground-state conformers of the (unknown) triformamide molecule predicts that the E,E,E conformer will be more stable than the E,Z,Z conformer by 12.6 kJ mol-1 (or 42.3 kJ mol-1 by energy evaluations with the 4-31G basis set). These differences make direct observation of the E,Z,Z-conformer unlikely. Corresponding optimization of a model transition state for the conversion of the E,Z,Z into the E,E,E conformer suggests that the barrier to internal rotation is low with a calculated height of 33 kJ mol-1 (24 kJ mol-1 when evaluated with the 4-31G basis set). Successive formyl substitution in ammonia, represented by the series of molecules formamide, diformamide (formimide) and triformamide, leads to decreasing double-bond character in the N-C bonds as reflected in increasing N-C bond lengths, decreasing Mulliken π-overlap populations and decreasing barriers to rotation. Extension of the results for these three molecules suggests that the (known) triacetamide molecule has a non-planar E,E,E-type structure as is consistent with the observation of a single signal in its 1H n.m.r. spectrum.

An ab initio molecular orbital study of the geometry of the dicationic Wallach rearrangement intermediate

2003 ◽  
Vol 81 (6) ◽  
pp. 535-541 ◽  
Author(s):  
Robin A Cox ◽  
David YK Fung ◽  
Imre G Csizmadia ◽  
Erwin Buncel
Keyword(s):  
Ab Initio Calculations ◽  
Ab Initio ◽  
Acid Catalysis ◽  
Parent Compound ◽  
Methyl Groups ◽  
Intermediate Structure ◽  
Reaction Intermediates ◽  
Aromatic Rings ◽  
Molecular Orbital Study ◽  
Good Agreement

Ab initio calculations have been performed on several different structures for the dicationic intermediate proposed for the Wallach rearrangement of aromatic azoxy compounds to hydroxy-substituted azo systems in strongly acidic media. For the unsubstituted parent compound azoxybenzene, these calculations reveal that the preferred structure for the intermediate is planar, as previously assumed, but bent rather than linear as we have formulated it. The presence of two methyl groups at the para positions of both aromatic rings does not change this situation, but six methyl groups at all para and ortho ring positions lead to a different preferred structure — still bent but with the two aromatic rings now at 90° to one another rather than being coplanar — undoubtedly due to steric interference between the ortho methyl groups. In all the cases examined the two positive charges reside primarily in the aromatic rings rather than on the nitrogens, which are sp2 hybridized and still have their lone pairs. The overall structures can best be regarded as two six-electron π systems joined together, with little communication between the two rings. For the most part the calculations are in good agreement with experimental observations. Recent calculations on other possible reaction intermediates by other groups are also discussed.Key words: Ab initio calculations, Wallach rearrangement, azoxyarenes, reaction intermediate, acid catalysis, intermediate structure, reaction mechanism.

Formation of surface layer of hydrogen in pure aluminum

2019 ◽  
Vol 484 (1) ◽  
pp. 56-60
Author(s):  
D. A. Indejtsev ◽  
E. V. Osipova
Keyword(s):  
Surface Layer ◽  
Hydrogen Atom ◽  
Ab Initio ◽  
Pure Aluminum ◽  
Hydrogen Atoms ◽  
Energy Characteristics ◽  
Aluminum Crystal

Hydrogen atom behavior in pure aluminum is described by ab initio modelling. All main energy characteristics of the system consisting of hydrogen atoms in a periodic aluminum crystal are found.

Configurational Assignment and Conformational Study of Methylglyoxal Bisdimethylhydrazones Derived from the 2-Ethoxypropenal Precursor

2006 ◽  
Vol 59 (3) ◽  
pp. 211 ◽  
Author(s):  
Leonid B. Krivdin ◽  
Lyudmila I. Larina ◽  
Kirill A. Chernyshev ◽  
Natalia A. Keiko
Keyword(s):  
Ab Initio Calculations ◽  
Ab Initio ◽  
Experimental Measurements ◽  
Conformational Study ◽  
Lone Pairs ◽  
Configurational Assignment ◽  
Out Of Plane ◽  
High Level

A configurational assignment of the isomeric methylglyoxal bisdimethylhydrazones derived from the 2-ethoxypropenal precursor has been performed based on experimental measurements and high-level ab initio calculations of 1J(C,C) and 1J(C,H) couplings. The results reveal the marked stereochemical dependence upon the orientation of the lone pairs of both nitrogen atoms in different isomers. Methylglyoxal bisdimethylhydrazone is shown to exist in a mixture of the EE and ZE isomers (ca. 75:25), both of which adopt predominant s-trans conformations with minor (up to 8°) out-of-plane deviations.

scholarly journals Structural Parameters and Internal Rotational Barriers of tert-Butylammonium Ion: AM1 and ab initio Calculations

1992 ◽  
Vol 47 (12) ◽  
pp. 1255-1256
Author(s):  
Hiroyuki Ishida ◽  
Yoshihiro Kubozono ◽  
Setsuo Kashino ◽  
Ryuichi Ikeda
Keyword(s):  
Ab Initio Calculations ◽  
Ab Initio ◽  
Internal Rotation ◽  
Barrier Height ◽  
Structural Parameters ◽  
Mo Calculations ◽  
Ab Initio Mo Calculations ◽  
Rotational Barriers ◽  
Ab Initio Mo ◽  
Internal Rotational Barriers

Semiempirical and ab initio MO calculations were performed to estimate the structural parameters of tert-butylammonium ion and its potential energies for the internal rotation of the CH3 and NH3+ groups. The barrier height for the rotation of NH3+ was found to be lower than for that of CH3 , corresponding to the C - N bond being longer than the C - C bond.

scholarly journals The influence of exocyclic lone pairs on the bonding and geometry of type A mesoionic rings

2021 ◽  
Author(s):  
Christopher Antony Ramsden ◽  
Wojciech Piotr Oziminski
Keyword(s):  
Ab Initio ◽  
Type A ◽  
Nbo Analysis ◽  
Ring Systems ◽  
X Ray ◽  
X Ray Crystallography ◽  
Bond Model ◽  
Lone Pairs ◽  
Mp2 Calculations ◽  
Good Agreement

AbstractBased on structures determined by X-ray crystallography, ab initio MP2 calculations on type A mesoionic rings give geometries in good agreement with observed values. A study of four mesoionic ring systems, each with exocyclic oxygen, nitrogen or carbon groups, shows that the presence and configuration of exocyclic lone pairs significantly influences the geometry and configurational preference. Using a localised bond model and NBO analysis, these effects are rationalised in terms of an anomeric interaction of lone pairs with the antibonding orbitals of adjacent σ bonds. In agreement with experiment, similar effects are calculated for pyran-2-imines.

Ab initio study of internal rotation in 2-pyridincarboxaldehyde

1990 ◽  
Vol 210 ◽  
pp. 291-298 ◽  
Author(s):  
Y.G. Smeyers ◽  
A. Hernández-Laguna ◽  
M.J. Martín-Delgado ◽  
M.J. Macedo ◽  
M.I. Suero
Keyword(s):  
Ab Initio ◽  
Internal Rotation ◽  
Ab Initio Study

A pairwise additivity scheme for conformational energies of substituted ethanes

1975 ◽  
Vol 343 (1632) ◽  
pp. 1-10 ◽  
Keyword(s):  
Large Deviations ◽  
Ab Initio ◽  
Dihedral Angle ◽  
Molecular Orbital ◽  
Methyl Groups ◽  
Molecular Orbital Calculations ◽  
Linear Combinations ◽  
Strongly Interacting ◽  
Conformational Energies

Ab initio molecular orbital calculations are used to explore additivity in the conformational energies of poly-substituted ethanes in terms of conformational energies of ethane and appropriate mono- and 1,2-di-substituted derivatives. Such relations would allow complex calculations for poly-substituted ethanes to be replaced by much simpler ones on a small number of parent molecules. General expressions for the linear combinations are derived from the assumption that interactions between vicinal substituents are pairwise additive and depend only on the vicinal dihedral angle. The additivity scheme is tested for 15 ethanes, di-, tri- or tetrasubstituted by cyano and methyl groups and for a smaller number of fluoroethanes. Additivity applies to within 0.1- 0.3 k J mol -1 in the methylethanes and mostly to within about 0.7- 0.8 kJ mol -1 in cyanoethanes. Large deviations are found among the geminally substituted fluoroethanes. It is suggested that the additivity approximation is most successful in the absence of strongly interacting geminal groups. Predictions are made of conformational energies of ten hexa(cyano- and methyl-) substituted ethanes.

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