scholarly journals Relief from nitrogen starvation triggers transient destabilization of glycolytic mRNAs inSaccharomyces cerevisiaecells

2018 ◽  
Vol 29 (4) ◽  
pp. 490-498 ◽  
Author(s):  
Catherine Tesnière ◽  
Martine Pradal ◽  
Chloé Bessière ◽  
Isabelle Sanchez ◽  
Bruno Blondin ◽  
...  
Keyword(s):  
Glucose Sensing ◽  
Nutrient Sensing ◽  
Yeast Cells ◽  
Unexpected Result ◽  
Tor Signaling ◽  
Posttranscriptional Control ◽  
Gene Deletions ◽  
Glycolytic Gene ◽  
Glucose Carbon ◽  
Protein Elongation

Nitrogen replenishment of nitrogen-starved yeast cells resulted in substantial transcriptome changes. There was an unexplained rapid, transient down-regulation of glycolytic genes. This unexpected result prompted us to search for the factors controlling these changes, among which is the possible involvement of different nutrient-sensing pathways such as the TORC1 and cAMP/PKA pathways. To that end, the effects of various gene deletions or chemical blocking agents were tested by investigating the expression of PGK1, one of the glycolytic genes most affected after nitrogen replenishment. We report here that several factors affected glycolytic mRNA stability, among which were glucose sensing, protein elongation, nitrogen metabolism, and TOR signaling. Ammonium sensing was not involved in the response, but ammonium metabolism was required. Thus, our results suggest that, in the presence of glucose, carbon/nitrogen cross-talk is likely involved in the response to nitrogen upshift. Our data suggest that posttranscriptional control of glycolytic gene expression may be an important response to nitrogen replenishment.

scholarly journals The TOR Signal Transduction Cascade Controls Cellular Differentiation in Response to Nutrients

2001 ◽  
Vol 12 (12) ◽  
pp. 4103-4113 ◽  
Author(s):  
N. Shane Cutler ◽  
Xuewen Pan ◽  
Joseph Heitman ◽  
Maria E. Cardenas
Keyword(s):  
Signal Transduction ◽  
Protein Kinases ◽  
Protein Phosphatase ◽  
Nutrient Sensing ◽  
Yeast Cells ◽  
Regulatory Subunit ◽  
Growth Defect ◽  
Tor Pathway ◽  
Pseudohyphal Growth ◽  
Pseudohyphal Differentiation

Rapamycin binds and inhibits the Tor protein kinases, which function in a nutrient-sensing signal transduction pathway that has been conserved from the yeast Saccharomyces cerevisiaeto humans. In yeast cells, the Tor pathway has been implicated in regulating cellular responses to nutrients, including proliferation, translation, transcription, autophagy, and ribosome biogenesis. We report here that rapamycin inhibits pseudohyphal filamentous differentiation of S. cerevisiae in response to nitrogen limitation. Overexpression of Tap42, a protein phosphatase regulatory subunit, restored pseudohyphal growth in cells exposed to rapamycin. The tap42-11 mutation compromised pseudohyphal differentiation and rendered it resistant to rapamycin. Cells lacking the Tap42-regulated protein phosphatase Sit4 exhibited a pseudohyphal growth defect and were markedly hypersensitive to rapamycin. Mutations in other Tap42-regulated phosphatases had no effect on pseudohyphal differentiation. Our findings support a model in which pseudohyphal differentiation is controlled by a nutrient-sensing pathway involving the Tor protein kinases and the Tap42–Sit4 protein phosphatase. Activation of the MAP kinase or cAMP pathways, or mutation of the Sok2 repressor, restored filamentation in rapamycin treated cells, supporting models in which the Tor pathway acts in parallel with these known pathways. Filamentous differentiation of diverse fungi was also blocked by rapamycin, demonstrating that the Tor signaling cascade plays a conserved role in regulating filamentous differentiation in response to nutrients.

scholarly journals Homeostasis of branched-chain amino acids is critical for the activity of TOR signaling in Arabidopsis

eLife ◽  
2019 ◽  
Vol 8 ◽  
Author(s):  
Pengfei Cao ◽  
Sang-Jin Kim ◽  
Anqi Xing ◽  
Craig A Schenck ◽  
Lu Liu ◽  
...  
Keyword(s):  
Amino Acids ◽  
Mammalian Cells ◽  
Branched Chain Amino Acids ◽  
Nutrient Sensing ◽  
Tor Signaling ◽  
Functional Connection ◽  
Primary Input ◽  
Tor Kinase ◽  
Arabidopsis Mutant ◽  
Branched Chain

The target of rapamycin (TOR) kinase is an evolutionarily conserved hub of nutrient sensing and metabolic signaling. In plants, a functional connection of TOR activation with glucose availability was demonstrated, while it is yet unclear whether branched-chain amino acids (BCAAs) are a primary input of TOR signaling as they are in yeast and mammalian cells. Here, we report on the characterization of an Arabidopsis mutant over-accumulating BCAAs. Through chemical interventions targeting TOR and by examining mutants of BCAA biosynthesis and TOR signaling, we found that BCAA over-accumulation leads to up-regulation of TOR activity, which causes reorganization of the actin cytoskeleton and actin-associated endomembranes. Finally, we show that activation of TOR is concomitant with alteration of cell expansion, proliferation and specialized metabolism, leading to pleiotropic effects on plant growth and development. These results demonstrate that BCAAs contribute to plant TOR activation and reveal previously uncharted downstream subcellular processes of TOR signaling.

scholarly journals Nutrient sensing and TOR signaling in yeast and mammals

2017 ◽  
Vol 36 (4) ◽  
pp. 397-408 ◽  
Author(s):  
Asier González ◽  
Michael N Hall
Keyword(s):  
Nutrient Sensing ◽  
Tor Signaling

scholarly journals Transcriptional Repression by the Pho4 Transcription Factor Controls the Timing of SNZ1 Expression

2008 ◽  
Vol 7 (6) ◽  
pp. 949-957 ◽  
Author(s):  
Masafumi Nishizawa ◽  
Tae Komai ◽  
Nobuyuki Morohashi ◽  
Mitsuhiro Shimizu ◽  
Akio Toh-e
Keyword(s):  
Gene Expression ◽  
Transcription Factor ◽  
Transcriptional Repression ◽  
Structural Changes ◽  
Expression Profiles ◽  
Gene Expression Profiles ◽  
Nutrient Sensing ◽  
Yeast Cells ◽  
Diauxic Shift

ABSTRACT Nutrient-sensing kinases play important roles for the yeast Saccharomyces cerevisiae to adapt to new nutrient conditions when the nutrient status changes. Our previous global gene expression analysis revealed that the Pho85 kinase, one of the yeast nutrient-sensing kinases, is involved in the changes in gene expression profiles when yeast cells undergo a diauxic shift. We also found that the stationary phase-specific genes SNZ1 and SNO1, whch share a common promoter, are not properly induced when Pho85 is absent. To examine the role of the kinase in SNZ1/SNO1 regulation, we analyzed their expression during the growth of various yeast mutants, including those affecting Pho85 function or lacking the Pho4 transcription factor, an in vivo substrate of Pho85, and tested Pho4 binding by chromatin immunoprecipitation. Pho4 exhibits temporal binding to the SNZ1/SNO1 promoter to down-regulate the promoter activity, and a Δpho4 mutation advances the timing of SNZ1/SNO1 expression. SNZ2, another member of the SNZ/SNO family, is expressed at an earlier growth stage than SNZ1, and Pho4 does not affect this timing, although Pho85 is required for SNZ2 expression. Thus, Pho4 appears to regulate the different timing of the expression of the SNZ/SNO family members. Pho4 binding to the SNZ1/SNO1 promoter is accompanied by alterations in chromatin structure, and Rpd3 histone deacetylase is required for the proper timing of SNZ1/SNO1 expression, while Asf1 histone chaperone is indispensable for their expression. These results imply that Pho4 plays positive and negative roles in transcriptional regulation, with both cases involving structural changes in its target chromatin.

scholarly journals Glucose intake hampers PKA-regulated HSP90 chaperone activity

eLife ◽  
2018 ◽  
Vol 7 ◽  
Author(s):  
Yu-Chen Chen ◽  
Pei-Heng Jiang ◽  
Hsuan-Ming Chen ◽  
Chang-Han Chen ◽  
Yi-Ting Wang ◽  
...  
Keyword(s):  
Molecular Mechanisms ◽  
Protein Quality ◽  
Glucose Sensing ◽  
Nutrient Sensing ◽  
Heat Sensitivity ◽  
Functional Screening ◽  
Quantitative Mass Spectrometry ◽  
Glucose Intake ◽  
Gradual Loss ◽  
Hsp90 Chaperone

Aging is an intricate phenomenon associated with the gradual loss of physiological functions, and both nutrient sensing and proteostasis control lifespan. Although multiple approaches have facilitated the identification of candidate genes that govern longevity, the molecular mechanisms that link aging pathways are still elusive. Here, we conducted a quantitative mass spectrometry screen and identified all phosphorylation/dephosphorylation sites on yeast proteins that significantly responded to calorie restriction, a well-established approach to extend lifespan. Functional screening of 135 potential regulators uncovered that Ids2 is activated by PP2C under CR and inactivated by PKA under glucose intake. ids2Δ or ids2 phosphomimetic cells displayed heat sensitivity and lifespan shortening. Ids2 serves as a co-chaperone to form a complex with Hsc82 or the redundant Hsp82, and phosphorylation impedes its association with chaperone HSP90. Thus, PP2C and PKA may orchestrate glucose sensing and protein folding to enable cells to maintain protein quality for sustained longevity.

Intestinal gluconeogenesis and protein diet: future directions

2020 ◽  
pp. 1-8
Author(s):  
Amandine Gautier-Stein ◽  
Fabienne Rajas ◽  
Gilles Mithieux
Keyword(s):  
Portal Vein ◽  
Energy Homeostasis ◽  
Glucose Sensing ◽  
Endogenous Glucose Production ◽  
Nutrient Sensing ◽  
Whole Body ◽  
Beneficial Effects ◽  
Obesity And Diabetes ◽  
Intestinal Gluconeogenesis ◽  
Protein Diets

High-protein meals and foods are promoted for their beneficial effects on satiety, weight loss and glucose homeostasis. However, the mechanisms involved and the long-term benefits of such diets are still debated. We here review how the characterisation of intestinal gluconeogenesis (IGN) sheds new light on the mechanisms by which protein diets exert their beneficial effects on health. The small intestine is the third organ (in addition to the liver and kidney) contributing to endogenous glucose production via gluconeogenesis. The particularity of glucose produced by the intestine is that it is detected in the portal vein and initiates a nervous signal to the hypothalamic nuclei regulating energy homeostasis. In this context, we demonstrated that protein diets initiate their satiety effects indirectly via IGN and portal glucose sensing. This induction results in the activation of brain areas involved in the regulation of food intake. The μ-opioid-antagonistic properties of protein digests, exerted in the portal vein, are a key link between IGN induction and protein-enriched diet in the control of satiety. From our results, IGN can be proposed as a mandatory link between nutrient sensing and the regulation of whole-body homeostasis. The use of specific mouse models targeting IGN should allow us to identify several metabolic functions that could be controlled by protein diets. This will lead to the characterisation of the mechanisms by which protein diets improve whole-body homeostasis. These data could be the basis of novel nutritional strategies targeting the serious metabolic consequences of both obesity and diabetes.

scholarly journals Glucose intake hampers PKA-regulated HSP90 chaperone activity

2018 ◽  
Author(s):  
Yu-Chen Chen ◽  
Pei-Heng Jiang ◽  
Hsuan-Ming Chen ◽  
Chang-Han Chen ◽  
Yi-Ting Wang ◽  
...  
Keyword(s):  
Molecular Mechanisms ◽  
Protein Quality ◽  
Glucose Sensing ◽  
Nutrient Sensing ◽  
Heat Sensitivity ◽  
Functional Screening ◽  
Quantitative Mass Spectrometry ◽  
Glucose Intake ◽  
Gradual Loss ◽  
Hsp90 Chaperone

AbstractAging is an intricate phenomenon associated with the gradual loss of physiological functions, and both nutrient sensing and proteostasis control lifespan. Although multiple approaches have facilitated the identification of candidate genes that govern longevity, the molecular mechanisms that link aging pathways are still elusive. Here, we conducted a quantitative mass spectrometry screen and identified all phosphorylation/dephosphorylation sites on yeast proteins that significantly responded to calorie restriction, a well-established approach to extend lifespan. Functional screening of 135 potential regulators uncovered that Ids2 is activated by PP2C under CR and inactivated by PKA under glucose intake. ids2Δ or ids2 phosphomimetic cells displayed heat sensitivity and lifespan shortening. Ids2 serves as a co-chaperone to form a complex with Hsc82 or the redundant Hsp82, and phosphorylation of Ids2 impedes its association with chaperone HSP90. Thus, PP2C and PKA orchestrate glucose sensing and protein folding to enable cells to maintain protein quality for sustained longevity.

TOR Signaling and Nutrient Sensing

2016 ◽  
Vol 67 (1) ◽  
pp. 261-285 ◽  
Author(s):  
Thomas Dobrenel ◽  
Camila Caldana ◽  
Johannes Hanson ◽  
Christophe Robaglia ◽  
Michel Vincentz ◽  
...  
Keyword(s):  
Nutrient Sensing ◽  
Tor Signaling

Glucose as a hormone: receptor-mediated glucose sensing in the yeast Saccharomyces cerevisiae

2005 ◽  
Vol 33 (1) ◽  
pp. 247-252 ◽  
Author(s):  
M. Johnston ◽  
J.-H. Kim
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Signal Transduction ◽  
Signal Transduction Pathway ◽  
Glucose Transporters ◽  
Glucose Sensing ◽  
Yeast Cells ◽  
Transduction Pathway ◽  
Yeast Saccharomyces Cerevisiae ◽  
Expression Of Genes ◽  
Genes Encoding

Because glucose is the principal carbon and energy source for most cells, most organisms have evolved numerous and sophisticated mechanisms for sensing glucose and responding to it appropriately. This is especially apparent in the yeast Saccharomyces cerevisiae, where these regulatory mechanisms determine the distinctive fermentative metabolism of yeast, a lifestyle it shares with many kinds of tumour cells. Because energy generation by fermentation of glucose is inefficient, yeast cells must vigorously metabolize glucose. They do this, in part, by carefully regulating the first, rate-limiting step of glucose utilization: its transport. Yeast cells have learned how to sense the amount of glucose that is available and respond by expressing the most appropriate of its 17 glucose transporters. They do this through a signal transduction pathway that begins at the cell surface with the Snf3 and Rgt2 glucose sensors and ends in the nucleus with the Rgt1 transcription factor that regulates expression of genes encoding glucose transporters. We explain this glucose signal transduction pathway, and describe how it fits into a highly interconnected regulatory network of glucose sensing pathways that probably evolved to ensure rapid and sensitive response of the cell to changing levels of glucose.

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