scholarly journals Bacterial communities potentially involved in iron-cycling in Baltic Sea and North Sea sediments revealed by pyrosequencing

2016 ◽  
Vol 92 (4) ◽  
pp. fiw054 ◽  
Author(s):  
Carolina Reyes ◽  
Olaf Dellwig ◽  
Kirstin Dähnke ◽  
Matthias Gehre ◽  
Beatriz E. Noriega-Ortega ◽  
...  
2020 ◽  
Author(s):  
Kimberly D. Myers ◽  
◽  
Katrina Lee Jewell ◽  
P.S.K. Knappett ◽  
Mehtaz M. Lipsi ◽  
...  

2021 ◽  
Vol 9 (7) ◽  
pp. 1494
Author(s):  
Sandra Wiegand ◽  
Patrick Rast ◽  
Nicolai Kallscheuer ◽  
Mareike Jogler ◽  
Anja Heuer ◽  
...  

Planctomycetes are bacteria that were long thought to be unculturable, of low abundance, and therefore neglectable in the environment. This view changed in recent years, after it was shown that members of the phylum Planctomycetes can be abundant in many aquatic environments, e.g., in the epiphytic communities on macroalgae surfaces. Here, we analyzed three different macroalgae from the North Sea and show that Planctomycetes is the most abundant bacterial phylum on the alga Fucus sp., while it represents a minor fraction of the surface-associated bacterial community of Ulva sp. and Laminaria sp. Especially dominant within the phylum Planctomycetes were Blastopirellula sp., followed by Rhodopirellula sp., Rubripirellula sp., as well as other Pirellulaceae and Lacipirellulaceae, but also members of the OM190 lineage. Motivated by the observed abundance, we isolated four novel planctomycetal strains to expand the collection of species available as axenic cultures since access to different strains is a prerequisite to investigate the success of planctomycetes in marine environments. The isolated strains constitute four novel species belonging to one novel and three previously described genera in the order Pirellulales, class Planctomycetia, phylum Planctomycetes.


2014 ◽  
Vol 14 (15) ◽  
pp. 21943-21974 ◽  
Author(s):  
J. E. Jonson ◽  
J. P. Jalkanen ◽  
L. Johansson ◽  
M. Gauss ◽  
H. A. C. Denier van der Gon

Abstract. Land-based emissions of air pollutants in Europe have steadily decreased over the past two decades, and this decrease is expected to continue. Within the same time span emissions from shipping have increased, although recently sulphur emissions, and subsequently particle emissions, have decreased in EU ports and in the Baltic Sea and the North Sea, defined as SECAs (Sulphur Emission Control Areas). The maximum allowed sulphur content in marine fuels in EU ports is now 0.1%, as required by the European Union sulphur directive. In the SECAs the maximum fuel content of sulphur is currently 1% (the global average is about 2.4%). This will be reduced to 0.1% from 2015, following the new IMO rules (International Maritime Organisation). In order to assess the effects of ship emissions in and around the Baltic Sea and the North Sea, regional model calculations with the EMEP air pollution model have been made on a 1/4° longitude × 1/8° latitude resolution, using ship emissions in the Baltic Sea and the North Sea that are based on accurate ship positioning data. The effects on depositions and air pollution and the resulting number of years of life lost (YOLL) have been calculated by comparing model calculations with and without ship emissions in the two sea areas. The calculations have been made with emissions representative of 2009 and 2011, i.e. before and after the implementation of stricter controls on sulphur emissions from mid 2010. The calculations with present emissions show that per person, an additional 0.1–0.2 years of life lost is estimated in areas close to the major ship tracks with present emission levels. Comparisons of model calculations with emissions before and after the implementation of stricter emission control on sulphur show a general decrease in calculated particle concentration. At the same time, however, an increase in ship activity has resulted in higher emissions and subsequently air concentrations, in particular of NOx, especially in and around several major ports. Additional model calculations have been made with land based and ship emissions representative of year 2030. Following a decrease in emissions, air quality is expected to improve, and depositions to be reduced. Particles from shipping are expected to decrease as a result of emission controls in the SECAs. Further controls of NOx emissions from shipping are not decided, and calculations are presented with and without such controls.


2009 ◽  
Vol 75 (1-2) ◽  
pp. 138-149 ◽  
Author(s):  
Jørgen Bendtsen ◽  
Karin E. Gustafsson ◽  
Johan Söderkvist ◽  
Jørgen L.S. Hansen

2006 ◽  
Vol 167 (1-4) ◽  
pp. 335-350 ◽  
Author(s):  
Ok-Sun Kim ◽  
Pilar Junier ◽  
Johannes F. Imhoff ◽  
Karl-Paul Witzel

2014 ◽  
Vol 16 (1) ◽  
pp. 139-147 ◽  
Author(s):  
Jens Rydell ◽  
Lothar Bach ◽  
Petra Bach ◽  
Laura Guia Diaz ◽  
Joanna Furmankiewicz ◽  
...  

2019 ◽  
Vol 9 (16) ◽  
pp. 9225-9238 ◽  
Author(s):  
Francisco R. Barboza ◽  
Jonne Kotta ◽  
Florian Weinberger ◽  
Veijo Jormalainen ◽  
Patrik Kraufvelin ◽  
...  

2018 ◽  
Author(s):  
Ute Daewel ◽  
Corinna Schrum ◽  
Jed Macdonald

Abstract. Coupled physical-biological models usually resolve only parts of the trophic food chain and hence, run the risk of neglecting relevant ecosystem processes. Additionally, this imposes a closure term problem at the respective “ends” of the considered trophic levels. Here we propose a consistent NPZD-Fish modelling approach (ECOSMO E2E) to address the above-mentioned problem in lower trophic ecosystem modelling, and to understand how the implementation of higher trophic levels in a NPZD model affects the simulated response of the combined North Sea and Baltic Sea ecosystem. On the basis of the coupled ecosystem model ECOSMO II we implemented one functional group that represents fish and one group representing macrobenthos in the 3d model formulation. Both groups are linked to the lower trophic levels and to each other via predator-prey relationships. The model allows investigating bottom-up impacts on primary and secondary production and cumulative fish biomass dynamics, but also top-down mechanisms on the lower trophic level production. Model results for a ten-year long simulation period (1980–1989) were analysed and discussed with respect to the observed pattern. To address the relevance of the newly implemented trophic levels for the simulated model response, we compare the performance of the ECOSMO E2E to a respective truncated NPZD model (ECOSMO II), which simulated the same time period. Additionally, we performed scenario tests to analyse the new role of the zooplankton mortality closure term in the truncated NPZD and the fish mortality term in the end-to-end model, which summarizes pressure imposed on the system by fisheries and mortality imposed by apex predators. We found that the model-simulated macrobenthos and fish spatial and seasonal pattern agree well with current system understanding. Considering a dynamic fish component in the ecosystem model resulted in slightly improved model performance with respect to representation of spatial and temporal variations in nutrients, changes in modelled plankton seasonality and nutrient profiles. Model sensitivity scenarios showed that changes in the zooplankton mortality parameter are transferred up and down the trophic chain with little attenuation of the signal, while major changes in fish mortality and in fish biomass cascade down the food chain.


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