epiphytic communities
Recently Published Documents


TOTAL DOCUMENTS

55
(FIVE YEARS 20)

H-INDEX

14
(FIVE YEARS 2)

Biotropica ◽  
2021 ◽  
Author(s):  
Giesta Maria Olmedo Machado ◽  
Guilherme Salgado Grittz ◽  
André Luís Gasper

2021 ◽  
Vol 12 ◽  
Author(s):  
Marino Korlević ◽  
Marsej Markovski ◽  
Zihao Zhao ◽  
Gerhard J. Herndl ◽  
Mirjana Najdek

Surfaces of marine macrophytes are inhabited by diverse microbial communities. Most studies focusing on epiphytic communities of macrophytes did not take into account temporal changes or applied low sampling frequency approaches. The seasonal dynamics of epiphytic microbial communities was determined in a meadow of Cymodocea nodosa invaded by Caulerpa cylindracea and in a monospecific settlement of C. cylindracea at monthly intervals. For comparison the ambient prokaryotic picoplankton community was also characterized. At the OTU level, the microbial community composition differed between the ambient water and the epiphytic communities exhibiting host-specificity. Also, successional changes were observed connected to the macrophyte growth cycle. Taxonomic analysis, however, showed similar high rank taxa (phyla and classes) in the ambient water and the epiphytic communities, with the exception of Desulfobacterota, which were only found on C. cylindracea. Cyanobacteria showed seasonal changes while other high rank taxa were present throughout the year. In months of high Cyanobacteria presence the majority of cyanobacterial sequences were classified as Pleurocapsa. Phylogenetic groups present throughout the year (e.g., Saprospiraceae, Rhodobacteraceae, members without known relatives within Gammaproteobacteria, Desulfatitalea, and members without known relatives within Desulfocapsaceae) constituted most of the sequences, while less abundant taxa showed seasonal patterns connected to the macrophyte growth cycle. Taken together, epiphytic microbial communities of the seagrass C. nodosa and the macroalga C. cylindracea appear to be host-specific and contain taxa that undergo successional changes.


2021 ◽  
Vol 4 ◽  
Author(s):  
Alexandra G. Ponette-González

Woody ecosystems have a relatively thin but aerially extensive and dynamic layer of bark that, like leaves, regulates material exchange at the interface of air, water, and biota. Through interception, retention, and leaching of materials and interactions with epiphytic communities, bark alters the chemistry and composition of water draining over its surface during precipitation. This mini-review explores different perspectives and approaches to the study of bark and what they reveal about the myriad ways bark surfaces influence the quality of sub-canopy precipitation. Observational studies conducted over the past five decades in the fields of environmental science, ecohydrology, epiphyte ecology, and microbiology demonstrate that bark is an accumulator, transporter, substrate, and reactor. Bark passively accumulates materials from the atmosphere, water, and canopies, and also serves as an active transport surface, exchanging materials laterally and longitudinally. In addition, bark substrates influence epiphyte diversity, composition, and distribution, which, in turn, affect material cycling. Bark surfaces are dynamic over time, changing in response to disturbances (e.g., insect outbreaks, aging, and tree death)—how such changes influence the chemical and elemental composition of throughfall and stemflow merits further study. Moving forward, integration of diverse perspectives and approaches is needed to elucidate the influence of bark surfaces on solute and particulate transport and cycling within woody ecosystems.


2021 ◽  
Vol 9 (7) ◽  
pp. 1494
Author(s):  
Sandra Wiegand ◽  
Patrick Rast ◽  
Nicolai Kallscheuer ◽  
Mareike Jogler ◽  
Anja Heuer ◽  
...  

Planctomycetes are bacteria that were long thought to be unculturable, of low abundance, and therefore neglectable in the environment. This view changed in recent years, after it was shown that members of the phylum Planctomycetes can be abundant in many aquatic environments, e.g., in the epiphytic communities on macroalgae surfaces. Here, we analyzed three different macroalgae from the North Sea and show that Planctomycetes is the most abundant bacterial phylum on the alga Fucus sp., while it represents a minor fraction of the surface-associated bacterial community of Ulva sp. and Laminaria sp. Especially dominant within the phylum Planctomycetes were Blastopirellula sp., followed by Rhodopirellula sp., Rubripirellula sp., as well as other Pirellulaceae and Lacipirellulaceae, but also members of the OM190 lineage. Motivated by the observed abundance, we isolated four novel planctomycetal strains to expand the collection of species available as axenic cultures since access to different strains is a prerequisite to investigate the success of planctomycetes in marine environments. The isolated strains constitute four novel species belonging to one novel and three previously described genera in the order Pirellulales, class Planctomycetia, phylum Planctomycetes.


2021 ◽  
Vol 12 ◽  
Author(s):  
Marino Korlević ◽  
Marsej Markovski ◽  
Zihao Zhao ◽  
Gerhard J. Herndl ◽  
Mirjana Najdek

Studies of unculturable microbes often combine methods, such as 16S rRNA sequencing, metagenomics, and metaproteomics. To apply these techniques to the microbial community inhabiting the surfaces of marine macrophytes, it is advisable to perform a selective DNA and protein isolation prior to the analysis to avoid biases due to the host material being present in high quantities. Two protocols for DNA and protein isolation were adapted for selective extractions of DNA and proteins from epiphytic communities inhabiting the surfaces of two marine macrophytes, the seagrass Cymodocea nodosa and the macroalga Caulerpa cylindracea. Protocols showed an almost complete removal of the epiphytic community regardless of the sampling season, station, settlement, or host species. The obtained DNA was suitable for metagenomic and 16S rRNA sequencing, while isolated proteins could be identified by mass spectrometry. Low presence of host DNA and proteins in the samples indicated a high specificity of the protocols. The procedures are based on universally available laboratory chemicals making the protocols widely applicable. Taken together, the adapted protocols ensure an almost complete removal of the macrophyte epiphytic community. The procedures are selective for microbes inhabiting macrophyte surfaces and provide DNA and proteins applicable in 16S rRNA sequencing, metagenomics, and metaproteomics.


2021 ◽  
Vol 12 ◽  
Author(s):  
Davide De Battisti ◽  
Elena Balestri ◽  
Giuseppina Pardi ◽  
Virginia Menicagli ◽  
Claudio Lardicci

Epiphytes colonizing adult seagrasses highly contribute to seagrass ecosystem functioning and plant growth. Yet, little information exists on epiphytic communities developing on seagrass seedlings. Moreover, for some species our knowledge about seedling performance is limited to early establishment phases, and the role of substrate type in affecting their growth is still unclear. These are considerable knowledge gaps, as seedlings play an important role in meadow expansion and recovery from disturbance. In this study, seedlings of Posidonia oceanica, a keystone species of the Mediterranean, were grown in a shallow (1.5 m deep) coastal area along the Tuscany coast (Italy). After five years of growth (July 2009), seedlings were collected and, through multivariate analysis, we examined whether the epiphytic communities of leaves (both internal and external side) and rhizomes, as well as the growth characteristics differed between rock and sand substrate. The epiphytic communities of seedlings largely reflected those found on adult shoots. Epiphyte cover was similar between the two leaf sides, and it was higher on seedlings grown on rock than on sand, with encrusting algae dominating the community. No differences in epiphyte cover and community structure on rhizomes were found between substrates. Seedling growth characteristics did not differ between substrates, apart from the number of standing leaves being higher on rock than on sand. No correlation was found among epiphyte communities and seedling growth variables (i.e., leaf area, maximum leaf length, number of leaves, total number of leaves produced, rhizome length, total biomass, and root to shoot biomass ratio). Results indicate that epiphytes successfully colonize P. oceanica seedlings, and the surrounding micro-environment (i.e., substrate type) can influence the leaf epiphytic community. This study provides new valuable insights on the biological interactions occurring in seagrass ecosystems and highlights the need for better understanding the effects of seedling epiphytes and substrate on the formation of new meadows.


2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Vincent Roubeix ◽  
Lucie Attia ◽  
Rémy Chavaux ◽  
Frank Very ◽  
Anthony Olivier ◽  
...  

Periphytic diatoms growing on aquatic turtle carapaces provide an interesting example of biofouling on an animal substrate. This study dealt with the question of the specificity of epizoic diatom communities for the case of the European pond turtle (Emys orbicularis) and across five water bodies in South-Eastern France. 375 diatom taxa have been identified on the European pond turtle carapace. The results showed that the epizoic communities of the five sites were significantly different from each other. The epizoic diatom communities could be clearly distinguished from epilithic and epiphytic communities only in two out of five sites. The differences in composition at the two sites resulted from the greater abundance of some species and life forms. However, the characteristic pattern of diatom communities on the carapaces was not the same at the two sites. It therefore appeared that the European pond turtle’s carapace did not harbour specific diatom communities and can rather be considered a neutral substrate.


2021 ◽  
Vol 12 ◽  
Author(s):  
Isabel Draper ◽  
Ricardo Garilleti ◽  
Juan Antonio Calleja ◽  
Maren Flagmeier ◽  
Vicente Mazimpaka ◽  
...  

Mosses of the subfamily Orthotrichoideae represent one of the main components of the cryptogam epiphytic communities in temperate areas. During the last two decades, this taxonomical group has undergone an extensive revision that has led to its rearrangement at the generic level. However, their phylogenetic relationships and inferences on the evolutionary patterns that have driven the present diversity have little advanced. In this study, we present a dated molecular phylogenetic reconstruction at the subfamily level, including 130 samples that represent the 12 genera currently recognized within the subfamily, and the analysis of four molecular markers: ITS2, rps4, trnG, and trnL-F. We also analyze 13 morphological characters of systematic value to infer their origin and diagnostic utility within the subfamily. The phylogenetic reconstruction yields three main clades within the subfamily, two of which correspond to the tribe Zygodonteae, and one to Orthotricheae. Within Zygodonteae, the genus Zygodon results to be a polyphyletic artificial assembly, and we propose to separate a new genus named Australoria. Conversely, our results do not support the separation of Pentastichella and Pleurorthotrichum at the genus level and we therefore propose to include Pleurorthotrichum in Pentastichella. Regarding Orthotricheae, our analyses clearly allow the distinction of two subtribes: Orthotrichinae and Lewinskyinae. Within the latter, Ulota results a polyphyletic entity, and therefore we propose the segregation of a separate new genus named Atlantichella. Dating analyses allow us to conclude that the split of the tribes within Orthotrichoideae dates from the Middle Jurassic, while the diversification of Orthotrichum and Zygodon probably started during the Late Cretaceous. However, most of the extant genera of this subfamily seem to be younger, and apparently its highest diversification burst took place during the Oligocene. Finally, the analysis of the morphological traits reveals that most of the characters previously used to separate genera and here tested are homoplastic, which has hindered the taxonomical and systematic proposals for decades. However, even if there are no exclusive characters, all of the genera can be defined by the combination of a few characters.


2021 ◽  
Vol 0 (0) ◽  
Author(s):  
Soultana Tsioli ◽  
Vasillis Papathanasiou ◽  
Anastasia Rizouli ◽  
Maria Kosmidou ◽  
Christos Katsaros ◽  
...  

Abstract Cymodocea nodosa, a typical marine angiosperm species in the Mediterranean Sea, hosts a range of epiphytic algae. Epiphyte abundance varies at different spatial scales, yet epiphyte diversity and community composition are poorly understood. This study explores the epiphytes on C. nodosa from two reference meadows (Thasos, Vrasidas) and one anthropogenically stressed meadow (Nea Karvali) in the northern Aegean Sea (Kavala Gulf, Greece). A nested destructive sampling design at three spatial scales (metres, hundreds of metres, kilometres) and stereoscopic/microscopic observations were used. Light microscopy revealed a total of 19 taxa of macroalgae populating the leaves of C. nodosa. The most commonly encountered taxa with highest cover (%) were Hydrolithon cruciatum and Feldmannia mitchelliae. DNA sequencing (18S rDNA) confirms the presence of a number of dinoflagellate and red algal epiphytes, and this represents the first application of DNA metabarcoding to study the diversity of seagrass epiphytes. Epiphytic communities studied at species/taxon and functional (Ecological Status Groups) levels separated the reference low-stressed meadows from the degraded one, with the functional approach having higher success. The ecological evaluation index classified the studied meadows into different Ecological Status Classes according to anthropogenic stress.


2021 ◽  
Author(s):  
Michael Salter ◽  
Chris Perry ◽  
Rosa Rodríguez-Martínez ◽  
Lorenzo Alvarez-Filip ◽  
Eric Jordan-Dahlgren

<p>The composition of modern carbonate sediments in nearshore tropical marine settings typically reflects a suite of somewhat proximal processes of carbonate production and erosion. Here, we document pelagic <em>Sargassum</em> as an emergent vector of carbonate sediment import to tropical Atlantic and Caribbean shorelines: a process with distal (oceanic) origins that has the potential to impart a distinct record of regional to global change within nearshore sediments. This process arose as recently as 2011, when a major new <em>Sargassum</em> bloom region emerged in the central Atlantic Ocean and resulted in Caribbean, West African, and northern Brazilian shorelines being inundated with <em>Sargassum</em> at unprecedented scales. Subsequent near annual recurrences of these coastal inundations at increasingly large scales suggest they are becoming an established norm. Socio-economic and ecological implications are widespread and potentially serious, and include potential impacts on the established sources and stability of nearshore carbonate sediments. This study, however, focuses on new sediment delivered to these coastal settings in the form of calcareous epiphytic communities that colonise <em>Sargassum</em> (i.e., bryozoans, serpulid worms, and red algae). Our analysis of <em>Sargassum</em> collected from coastal waters of the Mexican Caribbean in 2018 indicates a mean carbonate content of 2.09% wet weight at shoreline arrival. Based on data from 11 sites in Quintana Roo, Mexico (spanning 11.15 km of a 60 km section of shoreline), we further estimate the average drained weight of <em>Sargassum</em> that arrived at the coast during 2018 to have been 7.0x10<sup>3</sup> kg m<sup>-1</sup> of shoreline. Together, these findings indicate that mean import of new carbonate sediment by <em>Sargassum</em> was 179 kg m<sup>-1</sup> of shoreline in 2018, which is close to our upper estimate of annual proximal sediment production by <em>Thalassia</em> seagrass epiphytes (210 kg m<sup>-1</sup> of shoreline). Prior to the onset of these massive <em>Sargassum</em> inundations, grains recognisable as bryozoan skeletons and serpulid tube casings were rare in coastal sediments of the Mexican Caribbean. Consequently, if these calcareous <em>Sargassum</em> epiphytes that are evidently now being imported in large volumes are retained and preserved, they can be expected to impart a distinct record within these coastal sediments. Although quantitative data on <em>Sargassum</em> inundations from other locations are sparse, numerous reports from the scientific community and the media suggest the scale of these events is comparable for many exposed tropical Caribbean and Atlantic shorelines. This represents the first documentation of pelagic <em>Sargassum</em> as a major vector of coastal sediment import, the significance of which has likely only arisen since the onset of large-scale inundations in 2011.</p>


Sign in / Sign up

Export Citation Format

Share Document