Diversity of bacterial communities and dissolved organic matter in a temperate estuary

Viral lysis is a main mortality factor for bacteria in deep-sea sediments, leading to changing microbial community structures and the release of cellular components to the environment. Nature and fate of these compounds and the role of viruses for microbial diversity is largely unknown. We investigated the effect of viruses on the composition of bacterial communities and the pool of dissolved organic matter (DOM) by setting up virus-induction experiments using mitomycin C with sediments from the seafloor of the Bering Sea. At the sediment surface, no substantial prophage induction was detected, while incubations from 20 cm below seafloor showed a doubling of the virus-to-cell ratio. Ultra-high resolution mass spectrometry revealed an imprint of cell lysis on the molecular composition of DOM, showing an increase of molecular formulas typical for common biomolecules. More than 50% of these compounds were removed or transformed during incubation. The remaining material potentially contributed to the pool of refractory DOM. Next generation sequencing of the bacterial communities from the induction experiment showed a stable composition over time. In contrast, in the non-treated controls the abundance of dominant taxa (e.g., Gammaproteobacteria) increased at the expense of less abundant phyla. Thus, we conclude that viral lysis was an important driver in sustaining bacterial diversity, consistent with the “killing the winner” model.

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Photodegradation and biodegradation of dissolved organic matter on the surface of the Greenland Ice Sheet

10.5194/bg-2020-227 ◽

2020 ◽

Author(s):

Miranda J. Nicholes ◽

Christopher Williamson ◽

Martyn Tranter ◽

Alexandra Holland ◽

Marian Yallop ◽

...

Keyword(s):

Organic Matter ◽

Solar Radiation ◽

Dissolved Organic Matter ◽

Bacterial Communities ◽

Heterotrophic Bacteria ◽

Ice Sheet ◽

Greenland Ice Sheet ◽

Algal Pigment ◽

Surface Ice ◽

Dom Composition

Abstract. The surface (supraglacial) environment of the Greenland Ice Sheet (GrIS) is an active site for the storage, transformation and transport of carbon, which is driven by extremely high levels of solar radiation throughout the ablation season. Within the south west of the GrIS, blooms of Streptophyte micro-algae (hereafter glacier algae) at abundances of ~ 105 cell mL−1 dominate primary production in the surface ice and provide dissolved organic matter (DOM) to the heterotrophic bacterial community. Glacier algae contain photoprotective secondary phenolic pigment that comprises a large proportion of the cell (~ 4 % of the dry weight) and could represent a substantial, additional carbon source for the heterotrophic community. The transformation and degradation of DOM by solar radiation (photodegradation) and heterotrophic communities (biodegradation) represent two crucial controls on DOM composition and quantity; however, the influence of these processes within the surface ice is yet to be constrained. This study therefore assessed responses in the composition and quantity of two carbon sources (glacier algae secondary pigment and surface ice DOM) following exposure to UV, PAR, UV+PAR (photodegradation) and subsequent incubation with bacterial communities isolated from the ambient environment (biodegradation). Our results indicate that exposure to predominantly UV radiation altered the composition of glacier algal pigment and surface ice DOM; however, the quantity of DOM remained constant. Biodegradation caused the greatest changes to both DOM composition and quantity, particularly in surface ice DOM. Secondary pigment extracted from glacier algae was not a highly bioavailable source of carbon and did not support significant growth of surface ice heterotrophic bacterial communities. Conversely, low molecular weight compounds in surface ice DOM were rapidly utilised by heterotrophic bacteria supporting between a 3 and 9-fold increase in bacterial abundance over a 30-day incubation. We found that photodegradation of glacier algal pigment and surface ice DOM did not influence heterotrophic consumption. Photodegradation and biodegradation of DOM in the surface ice habitat are likely intimately linked and act as fundamental controls on the composition and quantity of DOM exported to downstream environments.

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