Species-specific residence times in the aft part of a pelagic survey trawl: implications for inference of pre-capture spatial distribution using the Deep Vision system

2018 ◽  
Vol 75 (4) ◽  
pp. 1393-1404 ◽  
Author(s):  
Melanie J Underwood ◽  
Shale Rosen ◽  
Arill Engås ◽  
Terje Jørgensen ◽  
Anders Fernö
Keyword(s):  
Spatial Distribution ◽  
Residence Time ◽  
Gadus Morhua ◽  
Atlantic Cod ◽  
Vision System ◽  
Ground Truth ◽  
Clupea Harengus ◽  
Melanogrammus Aeglefinus ◽  
Camera System ◽  
Species Specific

Abstract In-trawl camera systems promise to improve the resolution of trawl sampling used to ground-truth the interpretation of acoustic survey data. In this study, the residence time of fish in front of the Deep Vision camera system, used to identify, measure and count fish inside the trawl, was analysed to determine the reliability of spatial distribution recorded by the system. Although Atlantic herring (Clupea harengus), haddock (Melanogrammus aeglefinus), and most Atlantic cod (Gadus morhua) moved quickly back through the aft part of the pelagic trawl, saithe (Pollachius virens) spent up to 4 min in front of the system. The residence time increased for saithe and cod when other individuals were present, and cod swimming in the low water flow close to the trawl netting spent longer there than cod at the centre of the trawl. Surprisingly, residence time was not related to the size of the fish, which may be explained by the collective behaviour of shoaling fish. Our findings suggest that while in-trawl images can be used to identify, measure and count most species, when sampling fast-swimming species such as saithe the position inferred from when they were imaged may not reflect the actual spatial distribution prior to capture.

Fish Catches and Long-Term Tidal Cycles in Northwest Atlantic Fisheries: A Nonlinear Regression Approach

1987 ◽  
Vol 44 (11) ◽  
pp. 1890-1897 ◽  
Author(s):  
Paul Cabilio ◽  
David L. DeWolfe ◽  
Graham R. Daborn
Keyword(s):  
New England ◽  
Nonlinear Regression ◽  
Gadus Morhua ◽  
Atlantic Cod ◽  
Significant Negative Correlation ◽  
Clupea Harengus ◽  
Atlantic Menhaden ◽  
Melanogrammus Aeglefinus ◽  
Grand Banks

Selected long-term fisheries catch data from the New England – Fundy area and the Grand Banks were examined for concordance between changes in fish catches and the 18.6-yr nodal cycle of the tides using a nonlinear regression model. Significant positive correlations were found for Atlantic cod (Gadus morhua), haddock (Melanogrammus aeglefinus), alewife (Alosa pseudoharengus), Atlantic herring (Clupea harengus harengus), and scallop (Placopecten magellanicus), with lag times that are biologically appropriate for the time from hatching to recruitment into the fishery. A significant negative correlation with the nodal cycle was evident for Atlantic menhaden (Brevoortia tyrannus), for which this area constitutes the most northerly part of its range. Cod catches on the Grand Banks showed no correlation with the nodal cycle. It is suggested that the correlations between the nodal cycle and the changes in fish catches are caused by correlated changes either in sea surface temperature or in productivity resulting from changes in the degree of vertical mixing.

scholarly journals The use of species-specific TaqMan probes for identifying early stage gadoid eggs following formaldehyde fixation

2008 ◽  
Vol 65 (9) ◽  
pp. 1573-1577 ◽  
Author(s):  
Freya Goodsir ◽  
Michael J. Armstrong ◽  
Peter R. Witthames ◽  
David L. Maxwell ◽  
Clive J. Fox
Keyword(s):  
Gadus Morhua ◽  
Atlantic Cod ◽  
Early Stage ◽  
Melanogrammus Aeglefinus ◽  
Fish Eggs ◽  
Important Species ◽  
Taqman Probes ◽  
Positive Rate ◽  
Identification Technique ◽  
Species Specific

Abstract Goodsir, F., Armstrong, M. J., Witthames, P. R., Maxwell, D. L., and Fox, C. J. 2008. The use of species-specific TaqMan probes for identifying early stage gadoid eggs following formaldehyde fixation. – ICES Journal of Marine Science, 65: 1573–1577. Surveys of fish eggs are increasingly being used to monitor the spawning areas and stock status of commercially important species such as Atlantic cod (Gadus morhua), but early stage cod eggs are visually indistinguishable from those of several other common co-occurring species, including haddock (Melanogrammus aeglefinus) and whiting (Merlangius merlangus). In recent surveys in the Irish and North Seas, a molecular identification technique (TaqMan multiplex real-time polymerase chain-reaction) assay has been used to overcome this problem. The method needs high-quality DNA, so the current protocol requires that individual “cod-like” eggs are “presorted” from plankton hauls on board ship and immediately preserved in ethanol. This increases seagoing staff costs, can be a difficult process at sea, and means that plankton sampling cannot be undertaken from non-specialized vessels such as fishing boats. Successful application of TaqMan probes to DNA from eggs preserved in formalin would overcome these problems, but previous attempts have resulted in poor success. In this study, batches of hatchery-sourced cod, haddock, and whiting eggs were fixed in 4% buffered formalin for up to 3 weeks, then transferred to a formaldehyde-free solution for 1, 2, or 3 months. After these periods they were assessed visually for fixation quality and analysed using species-specific TaqMan probes. Eggs, which had been fixed for up to 3 weeks in formalin, were identified successfully, although the positive rate (84–96%) was slightly lower than samples preserved throughout in ethanol (92–99%). There was no increase in the percentage of eggs misidentified comparing formalin-fixed and ethanol-preserved material. These results suggest that TaqMan probes can be applied successfully to fish eggs fixed in 4% buffered formalin for up to 3 weeks.

Discarding practices for commercial gadoids in the North Sea

1998 ◽  
Vol 55 (7) ◽  
pp. 1632-1644 ◽  
Author(s):  
Yorgos Stratoudakis ◽  
Robert J Fryer ◽  
Robin M Cook
Keyword(s):  
North Sea ◽  
Gadus Morhua ◽  
Atlantic Cod ◽  
Melanogrammus Aeglefinus ◽  
The North ◽  
The North Sea ◽  
Merlangius Merlangus ◽  
Using Data ◽  
Species Specific ◽  
Catch Composition

Understanding fishers' discarding behaviour, and anticipating their reactions to changes in the biological or regulatory characteristics of a fishery, are important for dealing with the problem of discarding. In this paper, we investigate the discarding of haddock (Melanogrammus aeglefinus), whiting (Merlangius merlangus), and Atlantic cod (Gadus morhua) in the North Sea, using data collected by scientific observers onboard Scottish demersal vessels. We describe discarding on each trip by species-specific discard curves and explore how these curves depend on biological and regulatory variables. There are large differences in the size of discarded fish between inshore and offshore areas, with offshore-operating vessels discarding larger fish (high-grading). Increases in legal landing size correspond to immediate increases in the size of discarded fish, particularly for haddock and cod in inshore areas. In general, discarding practices for haddock and cod are similar over time and consistent across gears, whereas decisions for the lesser valued whiting are more variable and can be affected by the catch composition.

Estimating the biomass of a mixed species complex using hydroacoustics and catch data from the Bay of Fundy and Scotian Shelf summer ecosystem survey

2020 ◽  
Vol 77 (7) ◽  
pp. 1101-1116
Author(s):  
Allan J. Debertin
Keyword(s):  
Species Composition ◽  
Gadus Morhua ◽  
Atlantic Cod ◽  
Clupea Harengus ◽  
Bottom Trawl ◽  
Melanogrammus Aeglefinus ◽  
Acoustic Data ◽  
Catch Data ◽  
Scatter Coefficient ◽  
Management Advice

An acoustic-based index of biomass was developed due to concerns that the existing bottom-trawl index for western component pollock (Pollachius virens) was inaccurate and imprecise. Acoustic data were recorded during annual summer ecosystem surveys. Pollock and other common groundfish could not be readily identified from echo-traces within echograms. Survey catch data were analyzed concurrently with acoustic data to estimate biomass from echo-integrals contributed by the six most commonly caught fish species: pollock, Atlantic cod (Gadus morhua), haddock (Melanogrammus aeglefinus), redfish (Sebastes fasciatus), Atlantic herring (Clupea harengus), and spiny dogfish (Squalus acanthias). A cluster analyses that used a Bayesian conditional probability classified homogeneous regions based on species composition. Species composition, nautical area scatter coefficient, and backscattering cross-section of fishes for regions were used to calculate the biomass of fishes. Acoustic indices were considered as appropriate as bottom-trawl indices for fisheries management advice because the bias and variance were similar between the indices when analyzed using repeated K-fold cross-validation.

Production Responses for Multi-species Fisheries

1981 ◽  
Vol 38 (11) ◽  
pp. 1393-1404 ◽  
Author(s):  
R. J. Agnello ◽  
L. G. Anderson
Keyword(s):  
New England ◽  
Gadus Morhua ◽  
Atlantic Cod ◽  
Clupea Harengus ◽  
Categorical Variables ◽  
Melanogrammus Aeglefinus ◽  
Target Species ◽  
Northwest Atlantic ◽  
Fisheries Economics ◽  
Log Linear

Production equations are estimated for five major species of fish harvested in the Northwest Atlantic including Atlantic cod (Gadus morhua), haddock (Melanogrammus aeglefinus), flounder (Pleuronectiformes), redfish (Sebastes marinus), and herring (Clupea harengus) using data collected by the International Commission for the Northeast Atlantic Fisheries from 1960 to 1974. A log-linear regression specification is used in which the relationship between catch of a vessel and several factors including days fished and vessel characteristics is estimated simultaneously. Vessel characteristics are represented as (0, 1) categorical variables, and include a variable indicating the target species designated by the caption. Various settings for the target species variables allow the estimated equation to represent either a by-catch or target catch equation. The production parameters estimated by the regressions are used to analyze the effects of current quotas set by the New England Fisheries Management Council. For some fleets we find a likelihood of idle capacity given the current quotas.Key words: fisheries economics, multi-species harvesting, Northwest Atlantic fisheries

Predicting Recruitment Variation from Year Class Specific Vertebral Counts: An Analysis of the Potential and a Plan for Verification

1991 ◽  
Vol 48 (8) ◽  
pp. 1350-1357 ◽  
Author(s):  
Kenneth T. Frank
Keyword(s):  
Environmental Factors ◽  
North Sea ◽  
Gadus Morhua ◽  
Atlantic Cod ◽  
Negative Relationship ◽  
Early Life History ◽  
Clupea Harengus ◽  
Melanogrammus Aeglefinus ◽  
Southern Limit ◽  
Stock Discrimination

Recruitment prediction has been an elusive and seemingly unobtainable goal with no entirely satisfactory general approach yet available. I propose the use of meristic variation, traditionally applied to problems associated with stock discrimination studies, as a new method to predict recruitment variation. The approach is evaluated using literature data on year class strength (YCS) and year class specific average vertebral counts (VS), two apparently interrelated variables that are affected by environmental factors operating during the early life history. Three marine stocks at the southern limit of their species geographic range (Georges Bank haddock (Melanogrammus aeglefinus), North Sea Atlantic cod (Gadus morhua), and North Sea Atlantic herring (Clupea harengus hargenus)) and one stock at its northern limit (Pacific herring (Clupea harengus pallasi)) generally conformed to the prediction of a positive relationship between YCS and VS for southern stocks and a negative relationship for northern stocks. Exceptions to these patterns were found among stocks showing low temporal variability in recruitment or for stocks whose year class formation is not linked to environmental factors that establish the vertebral count of a year class. The approach adopted is consistent with the growing initiative of focusing on characteristics of the survivors of a population to provide insight into recruitment mechanisms.

Effect of Changes in Recruitment Levels on Multispecies Long-term Predictions

1993 ◽  
Vol 50 (11) ◽  
pp. 2315-2322 ◽  
Author(s):  
Henrik Gislason
Keyword(s):  
Gadus Morhua ◽  
Atlantic Cod ◽  
Relative Increase ◽  
Clupea Harengus ◽  
Melanogrammus Aeglefinus ◽  
Fish Stocks ◽  
The North ◽  
Predation Mortality ◽  
Spawning Stock ◽  
Relative Change

A multispecies model (MSFOR) is used to predict the relative change in equilibrium yield and spawning stock biomass (SSB) of commercially important fish stocks in the North Sea resulting from a reduction in the fishing mortality generated by the roundfish fishery. Because predation mortality is a function of the abundance of prey and predators the results will depend on recruitment. Assuming recruitment to be independent of stock sizes the effect of changes in recruitment is studied by repeating the predictions at all possible combinations of ±50% changes in predator and prey recruitment levels. All of the predictions result in a relative increase in the SSB of Atlantic cod (Gadus morhua) and saithe (Pollachius virens) and in a relative decrease in the SSB of Atlantic herring (Clupea harengus) and Norway pout (Trisopterus esmarkii). In these cases the sign of the relative change is robust to recruitment changes. However, for haddock (Melanogrammus aeglefinus), sprat (Sprattus sprattus), and sandeel (Ammodytes marinus) the relative change in SSB is found to be either positive or negative depending on the level of recruitment. The predictions for haddock are highly sensitive to changes in the level of saithe recruitment.

Predation risk on larval gadids by pelagic fish in the Georges Bank ecosystem. I. Spatial overlap associated with hydrographic features

2000 ◽  
Vol 57 (12) ◽  
pp. 2455-2469 ◽  
Author(s):  
Lance P Garrison ◽  
William Michaels ◽  
Jason S Link ◽  
Michael J Fogarty
Keyword(s):  
Gadus Morhua ◽  
Atlantic Cod ◽  
Clupea Harengus ◽  
Planktivorous Fish ◽  
Melanogrammus Aeglefinus ◽  
Spatial Distributions ◽  
Georges Bank ◽  
Spatial Overlap ◽  
Atlantic Mackerel ◽  
Fish Predators

We investigated the relationship between hydrographic variables on Georges Bank and the spatial distribution of larval Atlantic cod (Gadus morhua), larval haddock (Melanogrammus aeglefinus), and two planktivorous fish, Atlantic herring (Clupea harengus) and Atlantic mackerel (Scomber scombrus). We conducted cruises during April-May of 1990, 1994, and 1995 to document spatial distributions and employed logistic regression and a spatial-overlap index to assess relationships between hydrographic variables, spatial distributions and spatial overlap between gadid larvae and planktivorous fish. Cod larvae were more abundant in shallow well-mixed areas, while both haddock larvae and herring were more abundant in stratified areas. Atlantic mackerel occurred in deeper water and had little spatial overlap with the other species. In 1995, the presence of Scotian Shelf water and an intrusion of continental slope water altered temperature and salinity distributions and increased spatial overlap between cod larvae and herring. The stratified areas offer a higher concentration of prey for larval haddock, however there is increased exposure to planktivorous fish predators, creating a potential trade-off between predation and starvation. Due to the high abundance of planktivorous fish and high spatial and temporal overlap, predation is likely an important factor influencing survival of gadid larvae on Georges Bank.

Consideration of the Stable Age Distribution Assumption in "Analytical" Yield Models

1983 ◽  
Vol 40 (1) ◽  
pp. 95-101 ◽  
Author(s):  
M. Sinclair ◽  
R. O'Boyle ◽  
T. D. Iles
Keyword(s):  
Analytical Model ◽  
Growth Rates ◽  
Gadus Morhua ◽  
Atlantic Cod ◽  
Age Distribution ◽  
Clupea Harengus ◽  
Melanogrammus Aeglefinus ◽  
Yield Model ◽  
Stable Age Distribution ◽  
Recruitment Variability

The implications on the "analytical" yield model of deviations from the stable age distribution were investigated for stocks of five species with a range of life history characteristics, these being Atlantic cod (Gadus morhua), haddock (Melanogrammus aeglefinus), pollock (Pollachius virens), Atlantic herring (Clupea harengus harengus), and Atlantic mackerel (Scomber scrombus). Recruitment variability for the stocks considered ranged from 21% for pollock to 104% for haddock. The comparison of the growth rates at age for the five species showed the expected continuum in relative growth rates from cod to mackerel. With the population in a stable age distribution without fishing there is also a continuum from cod to mackerel in the manner in which age-specific production decreases through the life span. It is thus to be expected that deviations from the stable age distributions for mackerel would have a much greater impact on population production than would a similar deviation for cod. Also, species whose growth rates decrease more rapidly with age tend to have a higher recruitment variability. To demonstrate the implications of deviations from the stable age distribution on the accuracy of model output, MSY yields (that would have been generated given historical estimates of population numbers-at-age) were compared to estimates of annual population production. Cod and pollock production deviate relatively little from the "analytical" model predictions. In contrast, annual production for haddock, herring, and mackerel deviate markedly from MSY yields as the age composition deviates in each direction from the stable age distribution. The analysis suggests that for some species the "analytical" model may contribute to growth overfishing.Key words: "analytical" yield models, stable age distribution, growth overfishing

Parasites as biological tags in marine fisheries research: European Atlantic waters

Parasitology ◽  
2014 ◽  
Vol 142 (1) ◽  
pp. 54-67 ◽  
Author(s):  
K. MACKENZIE ◽  
W. HEMMINGSEN
Keyword(s):  
Marine Mammals ◽  
Gadus Morhua ◽  
Clupea Harengus ◽  
Melanogrammus Aeglefinus ◽  
Ecological Group ◽  
The North ◽  
Recent Developments ◽  
Host Parasite ◽  
Mediterranean And Black Seas ◽  
Biological Tags

SUMMARYStudies of the use of parasites as biological tags for stock identification and to follow migrations of marine fish, mammals and invertebrates in European Atlantic waters are critically reviewed and evaluated. The region covered includes the North, Baltic, Barents and White Seas plus Icelandic waters, but excludes the Mediterranean and Black Seas. Each fish species or ecological group of species is treated separately. More parasite tag studies have been carried out on Atlantic herring Clupea harengus than on any other species, while cod Gadus morhua have also been the subject of many studies. Other species that have been the subjects of more than one study are: blue whiting Micromesistius poutassou, whiting Merlangius merlangus, haddock Melanogrammus aeglefinus, Norway pout Trisopterus esmarkii, horse mackerel Trachurus trachurus and mackerel Scomber scombrus. Other species are dealt with under the general headings redfishes, flatfish, tunas, anadromous fish, elasmobranchs, marine mammals and invertebrates. A final section highlights how parasites can be, and have been, misused as biological tags, and how this can be avoided. It also reviews recent developments in methodology and parasite genetics, considers the potential effects of climate change on the distributions of both hosts and parasites, and suggests host-parasite systems that should reward further research.

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