scholarly journals Tutorial in Biostatistics: Evaluating the impact of ‘critical periods’ in longitudinal studies of growth using piecewise mixed effects models

2001 ◽  
Vol 30 (6) ◽  
pp. 1332-1341 ◽  
Author(s):  
Elena N Naumova ◽  
Aviva Must ◽  
Nan M Laird
2021 ◽  
pp. 1-4
Author(s):  
Michaela Kranepuhl ◽  
Detlef May ◽  
Edna Hillmann ◽  
Lorenz Gygax

Abstract This research communication describes the relationship between the occurrence of lameness and body condition score (BCS) in a sample of 288 cows from a single farm that were repeatedly scored in the course of 9 months while controlling for confounding variables. The relationship between BCS and lameness was evaluated using generalised linear mixed-effects models. It was found that the proportion of lame cows was higher with decreasing but also with increasing BCS, increased with lactation number and decreased with time since the last claw trimming. This is likely to reflect the importance of sufficient body condition in the prevention of lameness but also raises the question of the impact of overcondition on lameness and the influence of claw trimming events on the assessment of lameness. A stronger focus on BCS might allow improved management of lameness that is still one of the major problems in housed cows.


2020 ◽  
Author(s):  
Lior Rennert ◽  
Moonseong Heo ◽  
Alain H Litwin ◽  
Victor de Grutolla

Background: Stepped-wedge designs (SWDs) are currently being used to investigate interventions to reduce opioid overdose deaths in communities located in several states. However, these interventions are competing with external factors such as newly initiated public policies limiting opioid prescriptions, media awareness campaigns, and social distancing orders due to the COVID-19 pandemic. Furthermore, control communities may prematurely adopt components of the proposed intervention as they become widely available. These types of events induce confounding of the intervention effect by time. Such confounding is a well-known limitation of SWDs; a common approach to adjusting for it makes use of a mixed effects modeling framework that includes both fixed and random effects for time. However, these models have several shortcomings when multiple confounding factors are present. Methods: We discuss the limitations of existing methods based on mixed effects models in the context of proposed SWDs to investigate interventions intended to reduce mortality associated with the opioid epidemic, and propose solutions to accommodate deviations from assumptions that underlie these models. We conduct an extensive simulation study of anticipated data from SWD trials targeting the current opioid epidemic in order to examine the performance of these models under different sources of confounding. We specifically examine the impact of factors external to the study and premature adoption of intervention components. Results: When only external factors are present, our simulation studies show that commonly used mixed effects models can result in unbiased estimates of the intervention effect, but have inflated Type 1 error and result in under coverage of confidence intervals. These models are severely biased when confounding factors differentially impact intervention and control clusters; premature adoption of intervention components is an example of this scenario. In these scenarios, models that incorporate fixed intervention-by-time interaction terms and an unstructured covariance for the intervention-by-cluster-by-time random effects result in unbiased estimates of the intervention effect, reach nominal confidence interval coverage, and preserve Type 1 error, but may reduce power. Conclusions: The incorporation of fixed and random time effects in mixed effects models require certain assumptions about the impact of confounding by time in SWD. Violations of these assumptions can result in severe bias of the intervention effect estimate, under coverage of confidence intervals, and inflated Type 1 error. Since model choice has considerable impact on study power as well as validity of results, careful consideration needs to be given to choosing an appropriate model that takes into account potential confounding factors.


2016 ◽  
Vol 53 (2) ◽  
pp. 165-173
Author(s):  
Alicja Szabelska-Beręsewicz ◽  
Agnieszka Bilska ◽  
Katarzyna Waszkowiak ◽  
Idzi Siatkowski

AbstractThis paper concerns methods of choosing appropriate models for longitudinal studies. Attention is paid to three criteria: the marginal Akaike Information Criterion (mAIC), the conditional Akaike Information Criterion (cAIC), and the corrected conditional Akaike Information Criterion (ccAIC). We consider these criteria based on an example concerning the effect of storage time and addition of flaxseed (Linum usitatissimum L.) preparations (i.e. ground flaxseeds, defatted flaxseed meal and flaxseed ethanolic extract) on changes in lipid oxidation and fatty acid composition during the storage of liver pâté with partial substitution of fat with flax oil.


2018 ◽  
Vol 2018 ◽  
pp. 1-7 ◽  
Author(s):  
Lang Wu ◽  
Hongbin Zhang

Mixed effects models are widely used for modelling clustered data when there are large variations between clusters, since mixed effects models allow for cluster-specific inference. In some longitudinal studies such as HIV/AIDS studies, it is common that some time-varying covariates may be left or right censored due to detection limits, may be missing at times of interest, or may be measured with errors. To address these “incomplete data“ problems, a common approach is to model the time-varying covariates based on observed covariate data and then use the fitted model to “predict” the censored or missing or mismeasured covariates. In this article, we provide a review of the common approaches for censored covariates in longitudinal and survival response models and advocate nonlinear mechanistic covariate models if such models are available.


Author(s):  
Sara Y Tartof ◽  
Lie Hong Chen ◽  
Yun Tian ◽  
Rong Wei ◽  
Theresa Im ◽  
...  

Abstract Background Antibiotic stewardship programs (ASPs) have demonstrated success at reducing costs, yet there is limited quality evidence of their effectiveness to reduce infections of high-profile drug-resistant organisms. Methods This retrospective cohort study included all Kaiser Permanente Southern California (KPSC) members hospitalized in 9 KPSC hospitals aged ≥18 years from January 1, 2008 to December 31, 2016. We measured the impact of staggered ASP implementation on consumption of 18 ASP-targeted antibiotics using generalized linear mixed effects models. We used multivariable generalized linear mixed effects models to estimate the adjusted effect of ASP on rates of infection with drug-resistant organisms. Analyses were adjusted for confounding by time, cluster effects, and patient-level and hospital-level characteristics. Results We included 765,111 hospitalizations (288,257 pre-ASP, 476,854 post-ASP). By defined daily dose, we found a 6.1% (-7.5% - -4.7%) overall decrease in use of antibiotics post-ASP, and by days of therapy, we detected a 4.3% (-5.4% - -3.1%) decrease in overall use of antibiotics. The number of prescriptions increased post-ASP (1.04 [1.03–1.05]). In adjusted analyses, we detected an overall increase of VRE infection following ASP (1.37 [1.10-1.69]). We did not detect a change in the rates of ESBL, CRE and MDR Pseudomonas aeruginosa following ASP. Conclusions ASPs with successful reductions in consumption of targeted antibiotics may not see changes in infection rates with antibiotic-resistant organisms in the 2 to 6 years post-implementation. There are likely differing timescales for reversion to susceptibility across organisms and antibiotics, and unintended consequences from compensatory prescribing may occur.


2019 ◽  
Vol 17 (6) ◽  
pp. 845-876 ◽  
Author(s):  
Jorge Rodríguez-Menés ◽  
José M. López-Riba

We explore how the worldwide economic downturn of the early 2000s affected imprisonment rates across Europe. We test three hypotheses: (i) the recession caused an increase in incarceration rates directly, regulating the excess in labour supply; (ii) it did it indirectly, by affecting crime; (iii) its effects varied according to the institutional context – countries’ welfare states and criminal justice traditions. We use cross-national panel data to fit fixed, random and mixed-effects models and to explain variations in incarceration rates within and across countries during 12 years. The results show that the economic crisis had multiple effects on imprisonment and that these were moderated by the institutional context, increasing it in countries with less comprehensive welfare states and more punitive penal traditions and decreasing it in countries with penal-welfarist policies.


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