Detection of Human Immunodeficiency Virus Type 1 in AIDS Patients Using Amplification-Mediated Hybridization Analyses: Reproducibility and Quantitative Limitations

1990 ◽  
Vol 162 (1) ◽  
pp. 13-20 ◽  
Author(s):  
G. R. Davis ◽  
K. Blumeyer ◽  
L. J. DiMichele ◽  
K. M. Whitfield ◽  
H. Chappelle ◽  
...  
2002 ◽  
Vol 76 (12) ◽  
pp. 6277-6292 ◽  
Author(s):  
Paul R. Gorry ◽  
Joann Taylor ◽  
Geoffrey H. Holm ◽  
Andrew Mehle ◽  
Tom Morgan ◽  
...  

ABSTRACT Most human immunodeficiency virus type 1 (HIV-1) viruses in the brain use CCR5 as the principal coreceptor for entry into a cell. However, additional phenotypic characteristics are necessary for HIV-1 neurotropism. Furthermore, neurotropic strains are not necessarily neurovirulent. To better understand the determinants of HIV-1 neurovirulence, we isolated viruses from brain tissue samples from three AIDS patients with dementia and HIV-1 encephalitis and analyzed their ability to induce syncytia in monocyte-derived macrophages (MDM) and neuronal apoptosis in primary brain cultures. Two R5X4 viruses (MACS1-br and MACS1-spln) were highly fusogenic in MDM and induced neuronal apoptosis. The R5 viruses UK1-br and MACS2-br are both neurotropic. However, only UK1-br induced high levels of fusion in MDM and neuronal apoptosis. Full-length Env clones from UK1-br required lower CCR5 and CD4 levels than Env clones from MACS2-br to function efficiently in cell-to-cell fusion and single-round infection assays. UK1-br Envs also had a greater affinity for CCR5 than MACS2-br Envs in binding assays. Relatively high levels of UK1-br and MACS2-br Envs bound to CCR5 in the absence of soluble CD4. However, these Envs could not mediate CD4-independent infection, and MACS2-br Envs were unable to mediate fusion or infection in cells expressing low levels of CD4. The UK1-br virus was more resistant than MACS2-br to inhibition by the CCR5-targeted inhibitors TAK-779 and Sch-C. UK1-br was more sensitive than MACS2-br to neutralization by monoclonal antibodies (2F5 and immunoglobulin G1b12 [IgG1b12]) and CD4-IgG2. These results predict the presence of HIV-1 variants with increased CCR5 affinity and reduced dependence on CCR5 and CD4 in the brains of some AIDS patients with central nervous system disease and suggest that R5 variants with increased CCR5 affinity may represent a pathogenic viral phenotype contributing to the neurodegenerative manifestations of AIDS.


2006 ◽  
Vol 87 (6) ◽  
pp. 1557-1566 ◽  
Author(s):  
Timothy Gorrill ◽  
Mariha Feliciano ◽  
Ruma Mukerjee ◽  
Bassel E. Sawaya ◽  
Kamel Khalili ◽  
...  

Polyomavirus BK (BKV) is a serious problem for immunocompromised patients, where latent virus can enter into the lytic cycle causing cytolytic destruction of host cells. BKV infects >80 % of the population worldwide during childhood and then remains in a latent state in the kidney. In the context of immunosuppression in kidney transplant patients, reactivation of the viral early promoter (BKVE) results in production of T antigen, enabling virus replication and transition from latency to the lytic phase, causing polyomavirus-associated nephropathy. Reactivation of BKV can also cause complications such as nephritis, atypical retinitis and haemorrhagic cystitis in AIDS patients. Here, the effects of human immunodeficiency virus type 1 (HIV-1) proteins Tat and Vpr on BKV transcription were investigated and it was demonstrated that Tat dramatically stimulated BKVE. Site-directed mutagenesis analysis of potential Tat-responsive transcriptional motifs complemented by an electrophoretic mobility shift assay (EMSA) showed that Tat activated BKVE by inducing binding of the NF-κB p65 subunit to a κB motif near the 3′ end of BKVE. In addition, a sequence within the 5′ UTR of BKVE transcripts (BKVE-TAR) was identified that is identical to the HIV-1 transactivation response (TAR) element. The BKVE-TAR sequence bound TAT in RNA EMSA assays and deletion of the BKVE-TAR sequence eliminated Tat transactivation of BKVE transcription. Thus, Tat positively affected BKVE transcription by a dual mechanism and this may be important in diseases involving BKV reactivation in AIDS patients.


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