Phasing methods for powder data

Author(s):  
Carmelo Giacovazzo

Powder diffractometry plays (and will probably continue to play in the near future) a central role in research and technology, because it allows us to investigate materials which are not available as a single crystal of adequate size and quality. Therefore, recently, much effort has been devoted to the development of powder diffraction. Improvements include the design of better instruments (e.g. optimized synchrotron radiation lines, time-of-flight technology at pulsed neutron sources, optics, generators, detectors), as well as more sophisticated methods for data analysis. As a result, in favourable cases, high quality powder patterns of proteins may be collected which contain sufficient information to allow identification of the unit cell and of the space group, a result unthinkable 30 years ago. This has opened the way for qualitative analysis and study of the polymorphism of macromolecules (Margiolaki et al., 2005; Collings et al., 2010). Advances in the experimental and the theoretical aspects of powder crystallography have been able to reduce losses of information from a powder pattern with respect to single crystal data, and have made ab initio crystal structure solution from powder experiments possible. The reader may deduce the increasing popularity of powder techniques from: (i) Table 1.11, where, among the CSD (Cambridge Structural Database), entries on 1 January 2012, 2354 powder diffraction studies were counted; (ii) Figure 12.1, where the cumulative statistics (up to the year 2006) on the number of structures solved via powder diffraction data is shown (SDPD database); (iii) Figure 12.2, where the statistics on the number of studies in the ICDD (Inorganic Crystal Structure Database) (to the year 2005) for different types of data is given. For the powder case, 21 472 cases are counted for which powder data have been used, mostly for refinement purposes. In this chapter, we will neglect experimental aspects, unless unrelated to the phasing problem. We will describe in Sections 12.2 to 12.5, the basic features of powder pattern diagrams, and in Sections 12.6 and 12.7, the procedures for full pattern indexing and space group determination. Ab initio phasing will be treated in Section 12.8 and non-ab initio methods in Section 12.9. The combination of anomalous dispersion techniques with powder methods is postponed to Section 15.9.

2000 ◽  
Vol 56 (6) ◽  
pp. 998-1002 ◽  
Author(s):  
Thierry Bataille ◽  
Daniel Louër

From powder pattern indexing it has been demonstrated that [Y(H2O)]2(C2O4)(CO3)2, yttrium oxalate carbonate, crystallizes with orthorhombic symmetry, space group C2221, a = 7.8177 (7), b = 14.943 (1), c = 9.4845 (7) Å, V = 1108.0 (1) Å3, Z = 4. This unit cell displays a doubling of the c parameter, arising from weak diffraction lines observed in the powder diffraction pattern, with respect to results reported in the literature. The crystal structure has been solved ab initio using direct methods from powder data and has been confirmed by additional single-crystal data collected with a CCD area detector. The overall crystal structure is similar for both unit cells, except that an alternation of the carbonate groups in the direction parallel to the screw axis is displayed in the larger cell, while with the suggested half unit cell (space group C2mm) the carbonate groups would show only one orientation. The unit-cell determination strategy from single-crystal diffraction, collected with Nonius CAD-4 and Nonius Kappa CCD diffractometers, is discussed with respect to the results extracted from the powder diffraction pattern. The study demonstrates the power and usefulness of the full trace of a powder pattern for the detection of subtle structure details.


2011 ◽  
Vol 26 (1) ◽  
pp. 16-21 ◽  
Author(s):  
A. Le Bail ◽  
S. Ouhenia ◽  
D. Chateigner

An orthorhombic fully ordered structural model is proposed for vaterite [space group Ama2, a=8.4721(5) Å, b=7.1575(7) Å, c=4.1265(4) Å, Z=4, and V=250.23(4) Å3]. It is based on a microtwinning hypothesis, with three domains rotated by 120° along the orthorhombic a axis, regenerating a pseudohexagonal habit. The solution came from direct space ab initio calculations applied to the powder diffraction data. However, five weak superstructure reflections seen in single-crystal and powder diffraction experiments, leading to a six times larger unit cell, are still unexplained.


1982 ◽  
Vol 37 (5) ◽  
pp. 557-559 ◽  
Author(s):  
M. Pušelj ◽  
Z. Ban ◽  
A. Drašner

The crystal structure of the intermetallic phase HgZn3 was determined using X-ray single crystal and powder diffraction methods. The phase belongs to the orthorhombic system, most probable space group being Cmc21, and appears to be isostructural with β'-Cu3Ti. Under standard preparative conditions a statistical distribution of both atomic species was observed


1992 ◽  
Vol 45 (9) ◽  
pp. 1415 ◽  
Author(s):  
HJ Rossell ◽  
M Leblanc ◽  
G Ferey ◽  
DJM Bevan ◽  
DJ Simpson ◽  
...  

Bi2Te4O11 is monoclinic, space group P21/n; the lattice parameters derived from a Guinier powder pattern ( Si standard) are: a = 6.9909(3), b = 7.9593(3), c = 18.8963(8) � , β = 95.176(3)�, Z = 4, V = 1047.15 �. The structure was solved independently from both single-crystal X-ray data and a combination of X-ray and neutron powder data. It is an anion-deficient superstructure of fluorite in which can be recognized the ordered intergrowth of fluorite-type Bi2Te2O7 and rutile-type Te2O4. Lone-pair electrons are stereochemically active.


2017 ◽  
Vol 32 (3) ◽  
pp. 179-186 ◽  
Author(s):  
S. Mohamud ◽  
S. Pagola

The crystal structure of the purpureo salt, [Co(NH3)5Cl]Cl2, first reported in 1963 and later revised in 1968 (in both cases from single-crystal diffraction) in the space group Pnma (No. 62), has been recently re-examined from synchrotron X-ray powder diffraction using direct methods and the software EXPO2013. The comparison of the Rietveld analysis results using the two published models and the atomic coordinates obtained from powders leads to an improved crystal structure description in the lower symmetry space group Pn21a (No. 33). As a result, the overall atom connectivity and crystal packing remain similar; however, the symmetry and internal geometry of the coordination complex are changed. The distortions from an idealized geometry in Pnma (No. 62) are likely because of energetically favorable hydrogen-bonding motifs in the crystal. The three models are compared, and their validity and limitations are discussed.


2015 ◽  
Vol 70 (6) ◽  
pp. 365-372 ◽  
Author(s):  
Olaf Reckeweg ◽  
Ryo H. Wakabayashi ◽  
Francis J. DiSalvo ◽  
Armin Schulz ◽  
Christof Schneck ◽  
...  

AbstractTransparent colorless crystals of KCs[N(CN)2]2 and NaRb2[N(CN)2]3 · H2O were obtained by blending aqueous solutions of Na[N(CN)2] and RbF or KF, respectively. After evaporation of the water, the remaining solid was extracted with absolute ethanol and the solvent was allowed to evaporate at r. t.. KCs[N(CN)2]2 crystallizes in the space group C2/c (no. 15) with the cell parameters a = 1382.7(2), b = 998.1(1) and c = 1455.4(2) pm, and β = 118.085(4) °. The structure of NaRb2[N(CN)2]3 · H2O is exhibiting the space group P63/m (no. 176) with the cell parameters a = 705.98(7) and c = 1462.89(12) pm. Single-crystalline α-K[N(CN)2] was obtained while attempting to synthesize ‘NaK2[N(CN)2]3’, corroborating the results of previous X-ray powder diffraction experiments. Vibrational spectra and DSC/TGA analyses complete our results.


1993 ◽  
Vol 8 (3) ◽  
pp. 173-174 ◽  
Author(s):  
M. Venkateshwarlu ◽  
K. A. Hussain ◽  
T. Bhaskar Rao

The lattice parameters of triammonium citrate, (NH4)3C6H5O7, were determined by X-ray single crystal and powder diffraction methods. The crystal structure is orthorhombic with a = 6.187 ± 0.001 Å, b = 14.803 ± 0.004 Å, and c = 10.826 ± 0.003 Å, and from the systematic absences, the space group is Pcc2 ().


Author(s):  
Süheyla Özbey ◽  
F. B. Kaynak ◽  
M. Toğrul ◽  
N. Demirel ◽  
H. Hoşgören

AbstractA new type of inclusion complex, S(–)-1 phenyl ethyl ammonium percholorate complex of R-(–)-2-ethyl - N - benzyl - 4, 7, 10, 13 - tetraoxa -1- azacyclopentadecane, has been prepared and studied by NMR, IR and single crystal X-ray diffraction techniques. The compound crystallizes in space group


2020 ◽  
Vol 75 (8) ◽  
pp. 765-768
Author(s):  
Bohdana Belan ◽  
Dorota Kowalska ◽  
Mariya Dzevenko ◽  
Mykola Manyako ◽  
Roman Gladyshevskii

AbstractThe crystal structure of the phase Ce5AgxGe4−x (x = 0.1−1.08) has been determined using single-crystal X-ray diffraction data for Ce5Ag0.1Ge3.9. This phase is isotypic with Sm5Ge4: space group Pnma (No. 62), Pearson code oP36, Z = 4, a = 7.9632(2), b = 15.2693(5), c = 8.0803(2) Å; R1 = 0.0261, wR2 = 0.0460, 1428 F2 values and 48 variables. The two crystallographic positions 8d and 4c show Ge/Ag mixing, leading to a slight increase in the lattice parameters as compared to those of the pure binary compound Ce5Ge4.


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