scholarly journals Genome Assembly and Transcriptome of Colletotrichum sublineola CsGL1, a New Resource to Study Anthracnose Disease in Sorghum

2021 ◽  
Author(s):  
Patricia Baldrich ◽  
Timothy Chaya ◽  
Jeffrey L. Caplan ◽  
Blake C. Meyers
Keyword(s):  
Open Access ◽  
Genome Assembly ◽  
Causal Agent ◽  
Rna Seq ◽  
Pacbio Sequencing ◽  
Anthracnose Disease ◽  
Colletotrichum Species ◽  
Globally Distributed ◽  
Open Access Article ◽  
Chromosome Level

Colletotrichum species are globally distributed and well known as members of a destructive phytopathogenic genus, causing the anthracnose disease in a wide variety of crops and fruits. Colletotrichum sublineola is the causal agent of the anthracnose disease in sorghum, causing losses of up to 50% in yield. Here, we used PacBio sequencing combined with RNA-seq to generate a chromosome-level assembly and annotation of the Colletotrichum sublineola strain CsGL1. [Formula: see text] Copyright © 2021 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license .

scholarly journals Genome Sequence Resource for Colletotrichum scovillei, the Cause of Anthracnose Disease of Chili

2020 ◽  
pp. MPMI-03-20-0055
Author(s):  
Jianfei Huo ◽  
Yafei Wang ◽  
Yongjuan Hao ◽  
Yurong Yao ◽  
Yong Wang ◽  
...  
Keyword(s):  
Open Access ◽  
Genome Sequence ◽  
Species Complex ◽  
Reference Genome ◽  
Draft Genome ◽  
Pathogenic Mechanism ◽  
Anthracnose Disease ◽  
Colletotrichum Species ◽  
Colletotrichum Scovillei ◽  
Open Access Article

Colletotrichum species cause anthracnose disease on the economically important spice crop chili. A total of 24 Colletotrichum species are known to infect chili and cause anthracnose. C. scovillei belongs to the C. acutatum species complex, and it shows greater aggressiveness than other species, particularly in the case of inoculation onto the nonwounded fruits of chili plants. The current work introduces an initial Illumina-Nanopore hybrid draft genome for C. scovillei TJNH1 together with the related annotations. Knowledge of this genome sequence provides an important reference genome of C. scovillei and will help further understand the pathogenic mechanism of C. scovillei to plant. [Formula: see text] Copyright © 2020 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license .

Chromosome‐level genome assembly of the East Asian common octopus ( Octopus sinensis ) using PacBio sequencing and Hi‐C technology

2020 ◽  
Vol 20 (6) ◽  
pp. 1572-1582 ◽  
Author(s):  
Fenghui Li ◽  
Li Bian ◽  
Jianlong Ge ◽  
Fengming Han ◽  
Zhihong Liu ◽  
...  
Keyword(s):  
Genome Assembly ◽  
East Asian ◽  
Pacbio Sequencing ◽  
Common Octopus ◽  
Chromosome Level

A Chromosome-Level Genome Assembly Identifies the Origin of Neo-Y Chromosome to the Unique X 1X 2Y System

2019 ◽  
Author(s):  
Yongshuang Xiao ◽  
Zhizhong Xiao ◽  
Daoyuan Ma ◽  
Chenxi Zhao ◽  
Lin Liu ◽  
...  
Keyword(s):  
Y Chromosome ◽  
Genome Assembly ◽  
Chromosome Level

Environment Approach on Optimizing Tourism Facilities at Tourism Village in Indonesia

2019 ◽  
Vol 4 (10) ◽  
pp. 109 ◽  
Author(s):  
Nurlisa Ginting ◽  
Satria Halim
Keyword(s):  
Open Access ◽  
Peer Review ◽  
Qualitative Method ◽  
Local Community ◽  
Publishing House ◽  
Tourist Attraction ◽  
Dynamic Movement ◽  
International Publishing ◽  
Tourist Village ◽  
Open Access Article

Tourism is a sector that always has a dynamic movement which will benefit the local community. Lumban Suhi-suhi is a tourist village famous for its ulos on Samosir Island that has become one of the tourist attraction. Due to the limitations of facilities arrangement make it becomes less of the attraction itself. Therefore, the environment-based mechanism becomes one of the concepts that will be applied to improve the tourist facilities in which could increase tourists in that area. The researcher uses a qualitative method in the form of direct observation and interview and analyzing data with related theory.Keywords: Tourism Village; Facilities; Sustainable Tourism; EnvironmenteISSN: 2398-4287© 2019. The Authors. Published for AMER ABRA cE-Bs by e-International Publishing House, Ltd., UK. This is an open access article under the CC BYNC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). Peer–review under responsibility of AMER (Association of Malaysian Environment-Behaviour Researchers), ABRA (Association of Behavioural Researchers on Asians) and cE-Bs (Centre for Environment-Behaviour Studies), Faculty of Architecture, Planning & Surveying, Universiti Teknologi MARA, Malaysia.DOI: https://doi.org/10.21834/e-bpj.v4i10.1617

Determinants of Recycling Behaviour in Tioman Island

2017 ◽  
Vol 2 (4) ◽  
pp. 49
Author(s):  
Saripah Abdul Latif ◽  
Mohd Shukri Omar
Keyword(s):  
Open Access ◽  
Solid Waste ◽  
Significant Relationship ◽  
Environmental Problem ◽  
Publishing House ◽  
Negative Relationship ◽  
Broad Agreement ◽  
International Publishing ◽  
Open Access Article ◽  
Structured Questionnaire

The rapid increase in solid waste is a major environmental problem and recycling is argued to be a better solution to the problem. However, there is a broad agreement that there is a gap between the increasing awareness for recycling and the recycling behaviour among the consumers. The aim of this study is to investigate the recycling behaviour among 62 residents of Tioman Island. A structured questionnaire that included 33 items is used to obtain the data. The findings show a significant relationship between recycling behaviour and collectivism; a positive, weak relationship with recycling attitudes; and a negative relationship with materialism. Keywords: recycling behaviour; recycling attitudes; materialism and collectivism. eISSN 2514-7528 © 2017 The Authors. Published for AMER ABRA by e-International Publishing House, Ltd., UK . This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). Peer–review under responsibility of AMER (Association of Malaysian Environment-Behaviour Researchers), ABRA (Association of Behavioural Researchers on Asians) and cE-Bs (Centre for Environment-Behaviour Studies), Faculty of Architecture, Planning & Surveying, Universiti Teknologi MARA, Malaysia.

The Importance of Ergonomics on Urban Squares: Case from Istanbul

2019 ◽  
Vol 4 (11) ◽  
pp. 219
Author(s):  
Cigdem Canbay Turkyilmaz
Keyword(s):  
Open Access ◽  
Peer Review ◽  
Publishing House ◽  
Urban Spaces ◽  
Close Relationship ◽  
Weak Points ◽  
International Publishing ◽  
The Creation ◽  
The Individual ◽  
Open Access Article

There is a close relationship between the creation of urban spaces and ergonomics. To make new stimulating and satisfying urban spaces, ergonomics criteria should consider. In this study, two main urban squares from Istanbul examined. Selected urban squares evaluated by site observation according to the classified ergonomics criteria. Strong and weak points of chosen squares discussed and some suggestions proposed. The results demonstrated the fact that urban equipment meets the individual ergonomic criteria are not sufficient in the use of both squares, and they need to be re-planned.Keywords: Ergomomics; urban squares, IstanbuleISSN: 2398-4287 © 2019. The Authors. Published for AMER ABRA cE-Bs by e-International Publishing House, Ltd., UK. This is an open access article under the CC BYNC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). Peer–review under responsibility of AMER (Association of Malaysian Environment-Behaviour Researchers), ABRA (Association of Behavioural Researchers on Asians) and cE-Bs (Centre for Environment-Behaviour Studies), Faculty of Architecture, Planning & Surveying, Universiti Teknologi MARA, Malaysia.DOI: https://doi.org/10.21834/e-bpj.v4i11.1695 .

scholarly journals Chromosome-level genome assembly of a regenerable maize inbred line A188

2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Guifang Lin ◽  
Cheng He ◽  
Jun Zheng ◽  
Dal-Hoe Koo ◽  
Ha Le ◽  
...  
Keyword(s):  
Inbred Line ◽  
Genome Assembly ◽  
Gene Function ◽  
Maize Inbred Line ◽  
Carotenoid Cleavage Dioxygenase ◽  
Structural Variations ◽  
Embryonic Callus ◽  
Network Analyses ◽  
A Genome ◽  
Chromosome Level

Abstract Background The maize inbred line A188 is an attractive model for elucidation of gene function and improvement due to its high embryogenic capacity and many contrasting traits to the first maize reference genome, B73, and other elite lines. The lack of a genome assembly of A188 limits its use as a model for functional studies. Results Here, we present a chromosome-level genome assembly of A188 using long reads and optical maps. Comparison of A188 with B73 using both whole-genome alignments and read depths from sequencing reads identify approximately 1.1 Gb of syntenic sequences as well as extensive structural variation, including a 1.8-Mb duplication containing the Gametophyte factor1 locus for unilateral cross-incompatibility, and six inversions of 0.7 Mb or greater. Increased copy number of carotenoid cleavage dioxygenase 1 (ccd1) in A188 is associated with elevated expression during seed development. High ccd1 expression in seeds together with low expression of yellow endosperm 1 (y1) reduces carotenoid accumulation, accounting for the white seed phenotype of A188. Furthermore, transcriptome and epigenome analyses reveal enhanced expression of defense pathways and altered DNA methylation patterns of the embryonic callus. Conclusions The A188 genome assembly provides a high-resolution sequence for a complex genome species and a foundational resource for analyses of genome variation and gene function in maize. The genome, in comparison to B73, contains extensive intra-species structural variations and other genetic differences. Expression and network analyses identify discrete profiles for embryonic callus and other tissues.

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