The Spread of Stem Rust Caused by Puccinia graminis f. sp. tritici, with Virulence on Sr31 in Wheat in Eastern Africa

Stem rust resistance in wheat cultivars with Sr31 has been effective and durable worldwide for more than 30 years. Isolates of Puccinia graminis f. sp. tritici with virulence to Sr31 were detected in Uganda in 1999 (1). During 2003 and 2004, a majority of current Kenyan cultivars and a large portion of CIMMYT wheat germplasm with gene Sr31 planted in Kenya were susceptible to stem rust. Six isolates collected during 2004 at different locations in Kenya were tested for virulence on the 16 North American stem rust race differentials with the following Sr genes: Sr5, 6, 7b, 8a, 9a, 9b, 9d, 9e, 9g, 10, 11, 17, 21, 30, 36, and Tmp. An extended set of designated Sr genes (Sr13, 19, 22, 24, 25, 26, 29, 31, 32, 33, 35, 37, 39, 40, 44, and Wld-1) was also tested at the seedling stage. An isolate from Uganda collected in 1999 with virulence on Sr31 was used for comparison. Urediniospores suspended in a lightweight mineral oil were inoculated onto 7-day-old seedlings. Inoculated plants were placed in a dew chamber for 14 h at 18°C in the dark and then for an additional period of 3 to 4 h placed under fluorescent light. Plants were incubated in a greenhouse at 18 ± 2°C with a photoperiod of 16 h. Infection types (IT), described by Stakman et al. (3), were assessed after 14 days postinoculation. All isolates from Kenya exhibited a low infection type (IT 0) on line W2691SrTt-1 (donor of Sr36), a low infection type (IT 2) on cv. Triumph 64 (donor of SrTmp), and high infection types (IT 3 or 4) on all other lines in the differential set (2); thus these isolates were keyed to race TTKS. The virulence pattern of the isolate collected in 1999 from Uganda was identical to that from Kenya on the differential set and on the extended set of designated Sr genes. In this study, these isolates produced a high infection type (IT 3) on Einkorn and CnSSr21Tm (a derivative of Triticum monococcum in Chinese Spring background), two sources of Sr21 used in our study, whereas the isolate with Sr31-virulence from Uganda in 1999 was reported to be avirulent on Sr21 (1). These isolates produced high infection types on single gene lines with Sr31 and winter wheat cvs. Custer, Foster, GA-Dozier, Patton, and Pioneer 26R61, which were known to carry the 1BL.1RS translocation with Sr31. These isolates were also virulent on SrWld-1, a gene used in spring wheat for its resistance to North American stem rust isolates. In addition to Sr36 and SrTmp, other stem rust resistance genes that were effective against TTKS at the seedling stage include Sr13, 22, 24, 25, 26, 27, 29, 32, 33, 35, 37, 39, 40, and 44. Cultivars, breeding germplasm, and single gene lines are currently being evaluated for adult plant reaction in Kenya. Results from this study indicated that stem rust isolates with virulence on Sr31 are now wide spread in the Eastern Africa highlands and pose a threat to wheat production in the region, as well as in other wheat production areas where Sr31 resistance is important. A rapid deployment of effective resistance genes to this race in breeding programs throughout Eastern Africa and Asia is needed to reduce this threat. References: (1) Z. A. Pretorius et al. Plant Dis. 84:203, 2000. (2) A. P. Roelfs and J. W. Martens. Phytopathology 78:526, 1988. (3) E. C. Stakman et al. U.S. Department of Agriculture. ARS E-617, 1962.

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First Report of Races TKTTP and TKKTP of Puccinia graminis f. sp. tritici with Virulence to Wheat Stem Rust Resistance Gene Sr24 in Turkey and Tunisia

Plant Disease ◽

10.1094/pdis-03-21-0450-pdn ◽

2021 ◽

Author(s):

Kumarse Nazari ◽

Ezgi Kurtulus ◽

Handan Kavaz ◽

Omer M. Ozturk ◽

Yesim Egerci ◽

...

Keyword(s):

Resistance Gene ◽

Stem Rust ◽

Rust Resistance ◽

Infection Type ◽

Single Gene ◽

Stem Rust Resistance ◽

Puccinia Graminis ◽

Wheat Cultivars ◽

Wheat Stem Rust ◽

First Report

Severe wheat stem rust caused by Puccinia graminis Pers.:Pers. f. sp. tritici Erikss. (Pgt) can result in complete crop failure. In recent years, the increasing frequency and the early onset of stem rust in Central West Asia and North Africa (CWANA) has become a big concern. The Sr24 resistance gene, one of the most effective stem rust resistance genes effective against most P. graminis f. sp. tritici races worldwide, has been widely deployed. Until the recent establishment of virulence to Sr24 within the Ug99 lineage of the pathogen in Africa (Hei et al. 2020; Jin et al. 2008; Patpour et al. 2015), Iraq (Nazari et al., 2021), occasional detections of races virulent to Sr24 were reported in South Africa (Le Roux and Rijkenberg 1987), India (Bhardwaj et al. 1990), Germany (Olivera Firpo et al. 2017), Georgia (Olivera, et al. 2019), and Western Siberia (Skolotneva et al., 2020). During the rust surveys conducted in Sinops, Samsun, and Kastomonu in the Black Sea region in northern Turkey in 2018, 19 isolates were collected. Single pustule (SP) isolates were developed and used in race analysis in the Biosafety Rust Laboratory, Regional Cereal Rust Research Center (RCRRC), Izmir, Turkey. Sample recovery, experimental procedures for pre-inoculation, inoculation, incubation, and race typing were conducted as previously described (Nazari et al. 2021). Among the tested SP isolates, two isolates showed a high infection type (IT) of 33+ on the Sr24 tester line (Little Club/Agent) and a low infection type of 11+ for the source of Sr31 (Benno/6*LMPG-6). Eight SP isolates were further developed from the high IT 33+ pustules collected from the Sr24 tester line. After spore multiplications, they were used in inoculation of the 20 North American stem rust single-gene lines used to differentiate races of P. graminis f. sp. tritici, plus Trident (Sr38+), Siouxland (Sr24+Sr31), and Sisson (Sr31+Sr36). Five SP-derived isolates with IT 33+ on the Sr24 single-gene line collected from Samsun (Alacam – Etyemez; Location: N 41.61889 E 35.55722) and Sinop (Merkez-Sanlıoglu; Location: N 41.85556 E 35.04889) were identified as race TKKTP and the remaining three SP isolates as race TKTTP. In 2020, we detected two isolates of TKKTP among the stem rust samples from Tunisia submitted to RCRRC. These two isolates were collected from bread wheat cultivars Heydna and Tahmet at a trial site near Bou Salem in Western Tunisia (Location: N 36.5351 E 8.95486). Based on the negative results of the Stage 1 test using a suite of four real-time polymerase chain reaction assays diagnostic for the Ug99 race group developed by Szabo (2012), these two races should not belong to the Ug99 race group when compared to the reference Ug99 race TTKTT from Kenya. These races were virulent to Sr5, Sr21, Sr9e, Sr7b, Sr6, Sr8a, Sr9g, Sr9b, Sr30, Sr17, Sr9a, Sr9d, Sr10, SrTmp, Sr24, Sr38, and SrMcN. In addition to these genes, race TKTTP was virulent to Sr36. Both races were avirulent to Sr11 and Sr31. To our knowledge, this is the first report of P. graminis f. sp. tritici races with the Sr24 virulence in Turkey and Tunisia. The results reflect an increasing trend of virulence to Sr24 in the pathogen populations, and raise a great concern given the deployment of the Sr24 resistance gene in widely grown wheat cultivars worldwide.

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Characterization of Seedling Infection Types and Adult Plant Infection Responses of Monogenic Sr Gene Lines to Race TTKS of Puccinia graminis f. sp. tritici

Plant Disease ◽

10.1094/pdis-91-9-1096 ◽

2007 ◽

Vol 91 (9) ◽

pp. 1096-1099 ◽

Cited By ~ 181

Author(s):

Y. Jin ◽

R. P. Singh ◽

R. W. Ward ◽

R. Wanyera ◽

M. Kinyua ◽

...

Keyword(s):

Resistance Genes ◽

Stem Rust ◽

Rust Resistance ◽

Stem Rust Resistance ◽

Adult Plant ◽

Puccinia Graminis ◽

Plant Infection ◽

Infection Types ◽

Sr Genes ◽

Seedling Infection

Stem rust, caused by Puccinia graminis f. sp. tritici, historically was one of the most destructive diseases of wheat and barley. The disease has been under effective control worldwide through the widespread use of host resistance. A number of stem rust resistance genes in wheat have been characterized for their reactions to specific races of P. graminis f. sp. tritici. Adult plant responses to race TTKS (also known as Ug99) of monogenic lines for Sr genes, a direct measurement of the effectiveness for a given gene, have not been investigated to any extent. This report summarizes adult plant infection responses and seedling infection types for monogenic lines of designated Sr genes challenged with race TTKS. High infection types at the seedling stage and susceptible infection responses in adult plants were observed on monogenic lines carrying Sr5, 6, 7a, 7b, 8a, 8b, 9a, 9b, 9d, 9g, 10, 11, 12, 15, 16, 17, 18, 19, 20, 23, 30, 31, 34, 38, and Wld-1. Monogenic lines of resistance genes Sr13, 22, 24, 25, 26, 27, 28, 32, 33, 35, 36, 37, 39, 40, 44, Tmp, and Tt-3 were effective against TTKS both at the seedling and adult plant stages. The low infection types to race TTKS observed for these resistance genes corresponded to the expected low infections of these genes to other incompatible races of P. graminis f. sp. tritici. The level of resistance conferred by these genes at the adult plant stage varied between highly resistant to moderately susceptible. The results from this study were inconclusive for determining the effectiveness of resistance genes Sr9e, 14, 21, and 29 against race TTKS. The understanding of the effectiveness of individual Sr genes against race TTKS will facilitate the utilization of these genes in breeding for stem rust resistance in wheat.

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Genetic Mapping of Stem Rust Resistance to Puccinia graminis f. sp. tritici Race TRTTF in the Canadian Wheat Cultivar Harvest

Phytopathology ◽

10.1094/phyto-05-16-0186-r ◽

2017 ◽

Vol 107 (2) ◽

pp. 192-197 ◽

Cited By ~ 8

Author(s):

Colin W. Hiebert ◽

Matthew N. Rouse ◽

Jayaveeramuthu Nirmala ◽

Tom Fetch

Keyword(s):

Spring Wheat ◽

Stem Rust ◽

Rust Resistance ◽

Snp Markers ◽

Stem Rust Resistance ◽

Puccinia Graminis ◽

Wheat Cultivars ◽

Dh Population ◽

Sr Gene ◽

Sr Genes

Stem rust, caused by Puccinia graminis f. sp. tritici, is a destructive disease of wheat that can be controlled by deploying effective stem rust resistance (Sr) genes. Highly virulent races of P. graminis f. sp. tritici in Africa have been detected and characterized. These include race TRTTF and the Ug99 group of races such as TTKSK. Several Canadian and U.S. spring wheat cultivars, including the widely grown Canadian cultivar ‘Harvest’, are resistant to TRTTF. However, the genetic basis of resistance to TRTTF in Canadian and U.S. spring wheat cultivars is unknown. The objectives of this study were to determine the number of Sr genes involved in TRTTF resistance in Harvest, genetically map the resistance with DNA markers, and use markers to assess the distribution of that resistance in a panel of Canadian cultivars. A doubled haploid (DH) population was produced from the cross LMPG-6S/Harvest. The DH population was tested with race TRTTF at the seedling stage. Of 92 DH progeny evaluated, 46 were resistant and 46 were susceptible which perfectly fit a 1:1 ratio indicating a single Sr gene was responsible for conferring resistance to TRTTF in Harvest. Mapping with single nucleotide polymorphism (SNP) and simple sequence repeat (SSR) markers placed the resistance gene distally on the chromosome 6AS genetic map, which corresponded to the location reported for Sr8. SSR marker gwm459 and 30 cosegregating SNP markers showed the closest linkage, mapping 2.2 cM proximal to the Sr gene. Gene Sr8a confers resistance to TRTTF and may account for the resistance in Harvest. Testing a panel of Canadian wheat cultivars with four SNP markers closely linked to resistance to TRTTF suggested that the resistance present in Harvest is present in many Canadian cultivars. Two of these SNP markers were also predictive of TRTTF resistance in a panel of 241 spring wheat lines from the United States, Canada, and Mexico.

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Usefulness of Gene Pg10 as a Source of Stem Rust Resistance in Oat Breeding

Phytopathology ◽

10.1094/phyto.1999.89.12.1214 ◽

1999 ◽

Vol 89 (12) ◽

pp. 1214-1217 ◽

Cited By ~ 8

Author(s):

Donald E. Harder

Keyword(s):

Resistance Gene ◽

Stem Rust ◽

Rust Resistance ◽

Single Gene ◽

Stem Rust Resistance ◽

Complementary Effect ◽

Effective Level ◽

Infection Types ◽

Moderate Resistance ◽

Oat Breeding

Infection types produced by Puccinia graminis f. sp. avenae on plants of Avena sativa with the stem rust resistance gene Pg10 are characterized by moderate-sized uredinia surrounded by an area of chlorosis and a larger variable zone of dark brown necrosis. This study was undertaken to assess the effectiveness of gene Pg10 as a source of resistance to stem rust and to determine the interactions of this gene with other common Pg genes. A derived Pg10 line was tested with 58 distinct pathotypes of P. graminis f. sp. avenae and was crossed to substituted single-gene lines carrying the resistance gene Pg1, Pg2, Pg3, Pg4, Pg8, Pg9, Pg13, Pg15, Pg16, or Pga. The Pg10 line showed moderate resistance to all 58 patho-types, and there was no indication of specificity in virulence by any isolate. Gene Pg10 was inherited independently of the other Pg genes and had a complementary effect on the expression of resistance by these genes. An effective level of resistance conferred by Pg10 was demonstrated in a field nursery artificially inoculated with P. graminis f. sp. avenae. It was concluded that Pg10 is a potentially useful source of stem rust resistance in oat breeding, with its main attributes being an apparent broad base of resistance, ease of combining with other Pg genes, and complementary effects on the expression of other Pg genes

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THE INHERITANCE OF PATHOGENICITY IN RACES 111 AND 29 OF WHEAT STEM RUST

Canadian Journal of Genetics and Cytology ◽

10.1139/g69-033 ◽

1969 ◽

Vol 11 (2) ◽

pp. 266-274 ◽

Cited By ~ 4

Author(s):

K. N. Kao ◽

D. R. Knott

Keyword(s):

Stem Rust ◽

Rust Resistance ◽

Single Gene ◽

Stem Rust Resistance ◽

Wheat Stem Rust ◽

Complementary Genes

The inheritance of pathogenicity in wheat stem rust was studied in selfed cultures of races 29 and 111, F1 and F2 cultures of a cross between the two races and cultures from a backcross to race 29. The various cultures were tested on Marquis and Prelude and on a series of lines of these varieties carrying single genes for stem rust resistance. Virulence on Sr 5, Sr 6, Sr 8, Sr 9a, Sr 14 and a gene in Marquis was recessive and in each case there was a single gene for virulence corresponding to each gene for resistance. Virulence on Sr 1 was possibly controlled by two dominant complementary genes. There appeared to be two alleles for virulence on Prelude, one dominant and one recessive.

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Seedling Stage Resistance of Iranian Bread Wheat Germplasm to Race Ug99 of Puccinia graminis f. sp. tritici

Plant Disease ◽

10.1094/pdis-02-12-0138-re ◽

2013 ◽

Vol 97 (3) ◽

pp. 387-392 ◽

Cited By ~ 2

Author(s):

Mohsen Mohammadi ◽

Davoud Torkamaneh ◽

Mehran Patpour

Keyword(s):

Resistance Genes ◽

Stem Rust ◽

Rust Resistance ◽

Stem Rust Resistance ◽

Puccinia Graminis ◽

Wheat Cultivars ◽

Breeding Lines ◽

Wheat Germplasm ◽

Stem Rust Resistance Genes ◽

Rust Resistance Genes

Following emergence of Ug99, the new virulent race of Puccinia graminis f. sp. tritici in Africa, a global effort for identification and utilization of new sources of Ug99-resistant germplasm has been undertaken. In this study, we conducted replicated experiments to evaluate the resistance of Iranian wheat germplasm to the TTKSK lineage of the Ug99 race of P. graminis f. sp. tritici. We also evaluated for presence of stem rust resistance genes (i.e., Sr2, Sr24, Sr26, Sr38, Sr39, Sr31, and Sr1RSAmigo) in wheat cultivars and breeding lines widely cultivated in Iran. Our phenotyping data revealed high levels of susceptibility to Ug99 in Iranian bread wheat germplasm. Our genotyping data revealed that Iranian cultivars do not carry Sr24, Sr26, or Sr1RSAmigo. Only a few salt-tolerant cultivars and breeding lines tested positively for Sr2, Sr31, Sr38, or Sr39 markers. In conclusion, the genetic basis for resistance to Ug99 in Iranian wheat cultivars was found to be vulnerable. Acquiring knowledge about existing resistance genes and haplotypes in wheat cultivars and breeding lines will help breeders, cereal pathologists, and policy makers to select and pyramid effective stem rust resistance genes.

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Linkage and expression of genes for resistance to leaf rust and stem rust in triticale

Genome ◽

10.1139/g90-018 ◽

1990 ◽

Vol 33 (1) ◽

pp. 115-118 ◽

Cited By ~ 5

Author(s):

S. J. Singh ◽

R. A. McIntosh

Keyword(s):

Leaf Rust ◽

Stem Rust ◽

Genetic Linkage ◽

Rust Resistance ◽

Single Gene ◽

Leaf Rust Resistance ◽

Stem Rust Resistance ◽

Stem Rust Resistance Gene ◽

Expression Of Genes ◽

Triticosecale Wittmack

Leaf rust resistance in five triticale cultivars was controlled by a single gene designated LrSatu. This gene was closely linked in coupling with the stem rust resistance gene SrSatu believed to be located on chromosome 3R. Approximately 50% of lines in the 17th International Triticale Screening Nursery possessed SrSatu and LrSatu. Lines carrying SrSatu and LrSatu occurred more frequently among complete than in substituted triticale lines.Key words: × Triticosecale Wittmack, P. graminis f.sp. tritici, P. recondita f.sp. tritici, leaf rust, stem rust, rust resistnace, genetic linkage.

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Stem Rust Resistance in A-Genome Diploid Relatives of Wheat

Plant Disease ◽

10.1094/pdis-04-10-0260 ◽

2011 ◽

Vol 95 (8) ◽

pp. 941-944 ◽

Cited By ~ 39

Author(s):

M. N. Rouse ◽

Y. Jin

Keyword(s):

Resistance Genes ◽

Stem Rust ◽

Rust Resistance ◽

Infection Type ◽

Genetic Resistance ◽

Wheat Breeding ◽

Stem Rust Resistance ◽

Wheat Stem Rust ◽

A Genome ◽

Stem Rust Resistance Genes

Wheat stem rust, caused by Puccinia graminis f. sp. tritici, has been effectively controlled through the use of genetic resistance. P. graminis f. sp. tritici race TTKSK (Ug99) possesses virulence to many resistance genes that have been used in wheat breeding worldwide. One strategy to aid breeders in developing resistant cultivars is to utilize resistance genes transferred from wild relatives to wheat. Stem rust resistance genes have previously been introgressed from Triticum monococcum to wheat. In order to identify additional resistance genes, we screened 1,061 accessions of T. monococcum and 205 accessions of T. urartu against race TTKSK and four additional P. graminis f. sp. tritici races: TTTTF, TRTTF, QFCSC, and MCCFC. A high frequency of the accessions (78.7% of T. monococcum and 93.0% of T. urartu) were resistant to P. graminis f. sp. tritici race TTKSK, with infection types ranging from 0 to 2+. Among these resistant accessions, 55 T. monococcum accessions (6.4% of the total) were also resistant to the other four races. Associations of resistance in T. monococcum germplasm to different races indicated the presence of genes conferring resistance to multiple races. Comparing the observed infection type patterns to the expected patterns of known genes indicated that previously uncharacterized genes for resistance to race TTKSK exist in both T. monococcum and T. urartu.

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The inheritance of stem rust resistance in Thatcher wheat

Canadian Journal of Plant Science ◽

10.4141/p99-016 ◽

2000 ◽

Vol 80 (1) ◽

pp. 53-63 ◽

Cited By ~ 10

Author(s):

D. R. Knott

Keyword(s):

Stem Rust ◽

Rust Resistance ◽

Triticum Aestivum L ◽

Stem Rust Resistance ◽

Puccinia Graminis ◽

Single Seed Descent ◽

Good Resistance ◽

Canadian Prairies ◽

Single Seed ◽

Inheritance Of Rust Resistance

Thatcher was the predominant wheat (Triticum aestivum L.) cultivar on the Canadian prairies in the 1950s. Until race 15B (TMH) of stem rust (Puccinia graminis pers. f. sp. tritici Eriks. & Henn.) became widespread, Thatcher had good resistance to stem rust, but was susceptible to leaf rust (P. recondita f. sp. tritici Rob. ex Desm.). Although genes for stem rust resistance have been identified in Thatcher, the inheritance of its resistance has never been fully understood. The objective of this research was to attempt to elucidate the inheritance of the resistance of Thatcher and to determine why it had a reputation as a poor parent for rust resistance. Over a period of 40 yr, crosses and backcrosses to a susceptible genotype and two sets of single seed descent (SSD) lines were studied. The second set of SSD lines was tested with isolates of six races of stem rust to which Thatcher is resistant. The data showed that Thatcher is a very heterogenous cultivar with individual plants differing widely in the genes for stem rust resistance that they carry. The inheritance of rust resistance varied greatly from race to race and was often quite complex. Either complementary genes or a gene plus a suppressor appeared to condition resistance to one race. Most genes gave resistance to only one race. The presence of Sr5, which Thatcher is known to have obtained from Kanred, was confirmed. Most of its many additional genes probably came from Iumillo durum wheat. Key words: Stem rust, Thatcher wheat, single seed descent

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