scholarly journals Virulence Diversity of Phakopsora pachyrhizi Isolates From East Africa Compared to a Geographically Diverse Collection

Plant Disease ◽  
2017 ◽  
Vol 101 (7) ◽  
pp. 1194-1200 ◽  
Author(s):  
H. M. Murithi ◽  
J. S. Haudenshield ◽  
F. Beed ◽  
G. Mahuku ◽  
M. H. A. J. Joosten ◽  
...  

Soybean rust, caused by the biotrophic pathogen Phakopsora pachyrhizi, is a highly destructive disease causing substantial yield losses in many soybean producing regions throughout the world. Knowledge about P. pachyrhizi virulence is needed to guide development and deployment of soybean germplasm with durable resistance against all pathogen populations. To assess the virulence diversity of P. pachyrhizi, 25 isolates from eight countries, including 17 isolates from Africa, were characterized on 11 soybean genotypes serving as differentials. All the isolates induced tan lesions with abundant sporulation on genotypes without any known resistance genes and on soybean genotypes with resistance genes Rpp4 and Rpp5b. The most durable gene was Rpp2, where 96% of the isolates induced reddish brown lesions with little or no sporulation. Of the African isolates tested, the South African isolate was the most virulent, whereas those from Kenya, Malawi, and some of the isolates from Tanzania had the lowest virulence. An Argentinian isolate was virulent on most host differentials, including two cultivars carrying multiple resistance genes. Ten distinct pathotypes were identified, four of which comprised the African isolates representing considerable P. pachyrhizi virulence. Soybean genotypes carrying Rpp1b, Rpp2, Rpp3, and Rpp5 resistance genes and cultivars Hyuuga and UG5 were observed to be resistant against most of the African isolates and therefore may be useful for soybean-breeding programs in Africa or elsewhere.

Plant Disease ◽  
2012 ◽  
Vol 96 (1) ◽  
pp. 75-81 ◽  
Author(s):  
M. Twizeyimana ◽  
G. L. Hartman

The introduction of Phakopsora pachyrhizi, the cause of soybean rust, into the United States is a classic case of a pathogen introduction that became established in a new geographical region overwintering on a perennial host (kudzu, Pueraria lobata). The objective of our study was to classify the pathogenic variation of P. pachyrhizi isolates collected in the United States, and to determine the spatial and temporal associations. In total, 72 isolates of P. pachyrhizi collected from infected kudzu and soybean leaves in the United States were purified, then established and increased on detached soybean leaves. These isolates were tested for virulence and aggressiveness on a differential set of soybean genotypes that included six genotypes with known resistance genes (Rpp), one resistant genotype without any known characterized resistance gene, and a susceptible genotype. Three pathotypes were identified among the 72 U.S. P. pachyrhizi isolates based on the virulence of these isolates on the genotypes in the differential set. Six aggressiveness groups were established based on sporulating-uredinia production recorded for each isolate on each soybean genotype. All three pathotypes and all six aggressiveness groups were found in isolates collected from the southern region and from both hosts (kudzu or soybean) in 2008. Shannon's index based on the number of pathotypes indicated that isolates from the South region were more diverse (H = 0.83) compared with the isolates collected in other regions. This study establishes a baseline of pathogenic variation of P. pachyrhizi in the United States that can be further compared with variation reported in other regions of the world and in future studies that monitor P. pachyrhizi virulence in association to deployment of rust resistance genes.


Plant Disease ◽  
2013 ◽  
Vol 97 (10) ◽  
pp. 1379-1379 ◽  
Author(s):  
C. Paul ◽  
G. L. Hartman ◽  
J. J. Marois ◽  
D. L. Wright ◽  
D. R. Walker

During the years following the first detection of soybean rust, caused by Phakopsora pachyrhizi Syd., in the continental United States in November, 2004, soybean (Glycine max [L.] Merr.) genotypes with the Rpp1 or Rpp6 resistance genes exhibited high levels of resistance there (1,2,3). When challenged with 72 different American isolates collected between 2006 and 2009, PI 200492 (source of Rpp1) produced no sporulating lesions (2). In 2011 and 2012, however, field populations of P. pachyrhizi from Gadsden County, FL, caused higher rust severity on plants with Rpp1 or Rpp6 than in previous years. To assess aggressiveness, sporulation ratings were made using a 1 to 5 scale (no sporulation to profuse sporulation) on leaflets collected from field plants at or near the R6 (full seed) stage of development. A dissecting microscope was used to examine 3 replications of 5 leaflets each in 2009 or 2 replications of 10 leaflets each in 2012. The sporulation ratings increased on PI 200492 (from 1.1 ± 0.1 in 2009 to 4.1 ± 0.4 in 2012), PI 567102B (Rpp6; from 1.1 ± 0.1 in 2009 to 2.4 ± 0.2 in 2012), and L85-2378, a ‘Williams 82’ isoline carrying the Rpp1 gene (from 1.0 ± 0 in 2009 to 4.0 ± 0.3 in 2012). The mean 2009 and 2012 sporulation ratings for susceptible control Williams 82 were 5.0 ± 0 and 4.2 ± 0.1, respectively. Single-uredinium-derived isolates were purified from bulk isolates collected from field plots in 2009 (FL-Q09-1), 2011 (FL-Q11-1), and 2012 (FL-Q12-1). Greenhouse and detached leaflet assays were then used to test the virulence of these isolates under controlled conditions. Detached leaflets from 3-week-old seedlings of Williams 82, PI 200492, PI 567102B, and L85-2378 were inoculated by pipetting 15-μl drops of a 30 to 40 urediniospore μl–1 suspension onto the abaxial side of 3 to 4 leaflets per genotype, which were then sealed in Petri plates and incubated in a growth chamber at 20 to 22°C. Plates were kept in the dark for 12 h following inoculation. For the greenhouse assay, the first trifoliolate leaves of at least 3 seedlings were each sprayed with 1.5 ml of a 40 urediniospore μl–1 suspension and incubated 24 h at 22 to 24°C in a dark mist chamber. The plants were then maintained at 22 to 24°C and 76 to 86% relative humidity in a greenhouse with 10 h of daylight on average. Two weeks after inoculation with FL-Q11-1 or FL-Q12-1, all of the genotypes had developed TAN lesions with abundant sporulation, indicating susceptibility. On leaves inoculated with FL-Q09-1, however, no visible reaction was observed on PI 200492, and PI 567102B developed reddish-brown (RB) lesions associated with incomplete resistance. Although the lesions on Rpp1 and Rpp6 greenhouse seedlings inoculated with the FL-Q11-1 and FL-Q12-1 isolates were slightly darker than those that developed on Williams 82 plants or on detached leaflets, the profuse sporulation that is characteristic of the TAN infection type was observed. The higher virulence of the 2011 and 2012 Florida isolates on two soybean genotypes with Rpp1 and one with Rpp6 confirmed the presence of a P. pachyrhizi pathotype in north-central Florida that is more virulent against these genes than earlier populations from the southeastern United States. References: (1) S. Li. Crop Sci. 49:887, 2009. (2) Twizeyimana and Hartman. Plant Dis. 96:75, 2012. (3) Walker et al. Crop Sci. 51:678, 2011.


2014 ◽  
Vol 1 (1) ◽  
Author(s):  
Mateus Rodrigues Pereira ◽  
Bianca Castro Gouvêa ◽  
Francismar Corrêa Marcelino-Guimarães ◽  
Humberto Josué de Oliveira Ramos ◽  
Maurilio Alves Moreira ◽  
...  

AbstractAsian soybean rust (ASR), which is incited by the fungus Phakopsora pachyrhizi, is considered one of the most aggressive diseases to the soybean culture. There are no commercial cultivars immune to the pathogen and the control measure currently used is the application of fungicides that harms the environment and increases production costs. For a better understanding of the host’s response to the pathogen at the molecular level, two soybean genotypes were analyzed (PI561356, resistant to ASR and Embrapa 48, susceptible) at 72 hours and 192 hours after inoculation with spores of P. pachyrhizi. Leaf protein profiles of the plants were compared by two-dimensional electrophoresis associated with mass spectrometry (MS). Twenty-two protein spots presented different levels when the two treatments were compared (inoculated vs. non-inoculated). From those, twelve proteins were identified by MS analysis. Some of them are involved in metabolic pathways related to plant defense against pathogens, as in the case of carbonic anhydrase, 1-deoxy-D-xylulose- 5-phosphate reductoisomerase, fructose-bisphosphate aldolase and glutamine synthetase. The possible biochemical-physiological meanings of our findings are discussed.


Plant Disease ◽  
2011 ◽  
Vol 95 (8) ◽  
pp. 1007-1012 ◽  
Author(s):  
C. Paul ◽  
C. B. Hill ◽  
G. L. Hartman

Soybean resistance to Phakopsora pachyrhizi, the cause of soybean rust, has been characterized by the following three infection types: (i) immune response (IM; complete resistance) with no visible lesions, (ii) resistant reaction with reddish brown (RB) lesions (incomplete resistance), and (iii) susceptible reaction with tan-colored (TAN) lesions. Based on visual assessments of these phenotypes, single gene resistance in soybean to P. pachyrhizi has been documented, but colonization within infected tissues based on fungal DNA (FDNA) levels in different soybean genotypes had not been analyzed. The research used a quantitative polymerase chain reaction (Q-PCR) assay to compare visual disease assessment to FDNA in controlled inoculation experiments using two isolates of P. pachyrhizi. The objective of the first experiment was to compare data from digital visual disease assessment to FDNA from Q-PCR assays using digital visual disease assessment using five resistant soybean genotypes (one IM and four RB) and five susceptible genotypes (TAN). The objective of the second experiment was to quantify FDNA using Q-PCR at different time points after inoculation to determine if levels of fungal colonization differed in five soybean genotypes with different levels of resistance (one IM, two RB, and two TAN). For experiment 1, the numbers of uredinia and uredinia per lesion on four of the five resistant soybean genotypes were lower (P < 0.05) than the other six genotypes. Significant differences (P < 0.05) in FDNA concentrations were found among soybean genotypes with TAN lesions and among soybean genotypes with RB lesions. Soybean cultivar UG5 (IM phenotype) had significantly less (P < 0.05) FDNA than all of the other genotypes. Some genotypes that produced TAN lesions had significantly lower (P < 0.05) or non-significantly different FDNA concentrations compared to those genotypes that produced RB lesions. For experiment 2, the regression of FDNA on days after inoculation was significant (P < 0.01) with positive slopes for all genotypes except for UG5, in which FDNA declined over time, indicating a reduction of fungal colonization. The results of this Q-PCR FDNA screening technique demonstrates its use to distinguish different types of resistance, and could be used to facilitate the evaluation of soybean breeding populations, where precise quantification of incomplete and/or partial resistance is needed to identify and map quantitative trait loci.


2008 ◽  
Vol 117 (4) ◽  
pp. 545-553 ◽  
Author(s):  
Alexandre Garcia ◽  
Éberson Sanches Calvo ◽  
Romeu Afonso de Souza Kiihl ◽  
Arlindo Harada ◽  
Dario Minoru Hiromoto ◽  
...  

Plant Disease ◽  
2008 ◽  
Vol 92 (11) ◽  
pp. 1493-1496 ◽  
Author(s):  
H. K. Oloka ◽  
P. Tukamuhabwa ◽  
T. Sengooba ◽  
S. Shanmugasundram

Host plant resistance is the best long-term strategy for managing soybean rust (Phakopsora pachyrhizi) in endemic areas. Resistance breeding efforts are hampered by the presence of several races of the pathogen that often overcome single resistance genes deployed against them. In Uganda, only two soybean cultivars show moderate resistance to Phakopsora pachyrhizi, but this is likely to break down given the aggressive nature of the pathogen. A total of 25 rust tolerant or resistant accessions were imported from the Asian Vegetable Research and Development Centre and screened at Namulonge, in central Uganda. Only 10 accessions, G 33, G 8527, G8586, G 8587, GC 60020-8-7-7-18, GC 87016-11-B-2, GC 87021-26-B-1, SRE-D-14A, SRE-D-14B, and SS 86045-23-2, showed no rust symptoms at growth stage R6 during the three seasons of testing. Soybean rust resistance genes Rpp1, Rpp3, and Rpp4 did not confer resistance at Namulonge; gene Rpp2 was effective.


2009 ◽  
Vol 99 (12) ◽  
pp. 1412-1420 ◽  
Author(s):  
Anatoliy V. Lygin ◽  
Shuxian Li ◽  
Ramya Vittal ◽  
Jack M. Widholm ◽  
Glen L. Hartman ◽  
...  

Understanding the metabolic responses of the plant to a devastating foliar disease, soybean rust, caused by Phakopsora pachyrhizi, will assist in development of cultivars resistant to soybean rust. In this study, differences in phenolic metabolism were analyzed between inoculated and noninoculated plants using two susceptible and three resistant soybean genotypes with known resistance genes. Rust infection resulted in increased accumulation of isoflavonoids and flavonoids in leaves of all soybean genotypes tested. Although the soybean phytoalexin glyceollin was not detected in leaves of uninfected plants, accumulation of this compound at marked levels occurred in rust-infected leaves, being substantially higher in genotypes with a red-brown resistant reaction. In addition, there was inhibition of P. pachyrhizi spore germination by glyceollin, formononetin, quercetin, and kaempferol. However, there was no correlation between concentrations of flavonoids quercetin and kaempferol and rust-induced isoflavonoid formononetin in soybean leaves and rust resistance. Lignin synthesis also increased in all inoculated soybean genotypes whereas there was no significant difference in all noninoculated soybean genotypes. Cell wall lignification was markedly higher in inoculated resistant lines compared with inoculated susceptible lines, indicating a possible protective role of lignin in rust infection development.


2020 ◽  
Author(s):  
Symphorien Awande ◽  
Kossi Kini ◽  
Kassankogno Abalo Itolou ◽  
Harinjaka Raveloson ◽  
Robert Amayo ◽  
...  

Abstract BackgroundThe behavior of rice varieties under natural environments in fields often differs from the expected one. For developing varieties, breeders give then a particular importance to multi-local field screening to confirm the resistance of their germplasm. We assembled 81 accessions e.g. blast differential, traditional and improved varieties and tested them for resistance to blast (Pyricularia grisea) in eight African hot spots under different ecologies. We thus expected to identify accessions and genes or gene pyramids that provide durable resistance locally or across sites.Methods81 accessions (e.g. blast differential, traditional and improved varieties were tested in hot spots in Benin, Burkina Faso, Côte d'Ivoire, Madagascar, Mali, Rwanda, Togo and Uganda for resistance to leaf and neck blast. An Alpha design (randomized incomplete block) with four replications was used. Correlation between leaf blast and neck blast severity and between incidence and severity were analyzed.Results:From 2013 to 2016, multi-local screening tests were conducted at yje selected sites. Among the 81 rice accessions tested, seven accessions were consistently susceptible while 12 were resistant across locations and seasons. Interestingly, effective individual resistance genes (R genes) or gene pyramids efficient across the sites were identified. In addition, we noticed on some sites, changes in the responses of some rice accessions to the disease from one season to the other. Responses of some accessions also showed great variations from one site to another. In addition, several accessions sharing the same resistance genes exhibited different responses to blast. Regarding the neck blast, only fewer accessions could be assessed as very susceptible ones died at early stages. Although differential responses were observed in the four sites considered for the analysis, several accessions consistently resisted. In addition, results showed that leaf and neck blast resistances were correlated.ConclusionsResults obtained provide useful information on the tested germplasm resistance. In addition, it was possible to identify resistant accessions and sometimes the R genes associated which were effective locally or across sites. Results also showed shifts in pathogenicity of the pathogen populations over seasons and sites. Finally, breeders can now use this valuable information for sustainable blast resistance breeding.


Author(s):  
Julio César García-Rodríguez ◽  
Zeferino Vicente-Hernández ◽  
Manuel Grajales-Solís ◽  
Naoki Yamanaka

Asian soybean rust (ASR), caused by the pathogen Phakopsora pachyrhizi, is the main disease of soybean in Mexico and worldwide, threatening its production. Knowledge about the virulence of Mexican rust populations (MRPs) is crucial in order to develop or introduce soybean cultivars with resistance to this disease. This study investigated the geographic variation on the virulence of 19 MRPs collected in two states of Mexico: Tamaulipas and Chiapas, using a set of 12 differential soybean varieties. The inoculation of MRPs showed that there was no large difference in virulence to differentials carrying Rpp4 or Rpp5 between MRPs from the two states. However, a contrasting phenotype was observed on Rpp1, Rpp1-b, Rpp2, and Rpp3. In the comparative analysis of virulence profiles with 157 and 20 P. pachyrhizi samples from South America and Asia, respectively, the MRPs from Chiapas form an isolated cluster, including the Tamaulipas state. The MRPs from Tamaulipas clustered with South American samples because of common characteristics, such as virulence to Rpp1 and avirulence to Rpp1-b. However, opposite reactions on Rpp1 and Rpp1-b that have been reported in major USA pathogen were also observed in Chiapas samples. A common trend between Chiapas and major USA pathogen was also observed in Rpp3. As the main conclusion of the present study, the 1,000 km distance between these two states in Mexico makes a big difference in the virulence of ASR.


2002 ◽  
Vol 38 (SI 1 - 6th Conf EFPP 2002) ◽  
pp. 245-248
Author(s):  
B.A. McDonald ◽  
C. Linde

Plant pathologists have seen many boom-and-bust cycles following the deployment of resistant varieties. These cycles result when pathogen populations adapt to the presence of a major resistance gene by evolving a new population that can overcome this resistance gene. The breakdown of genetic resistance is due to the evolution of the local pathogen population because of selection for mutants, recombinants, or immigrants that are better adapted to the resistant cultivar. To understand the process that leads to breakdown of a resistance gene, we need to understand the processes that govern pathogen evolution. Population geneticists have identified five evolutionary forces that interact to affect the evolution of organisms. We ranked these risks and developed a quantitative framework to predict the risk that a pathogen will evolve to overcome major resistance genes. Our hypothesis is that much of the durability of resistance genes is due to the nature of the pathogen population rather than to the nature of the resistance gene. The framework we developed can be used as a hypothesis to test against a large number of plant pathosystems. The underlying principles of the framework can be tested individually or in combination according to the available knowledge of the population genetics for any pathogen. We propose that this framework can be used to design breeding strategies to break the boom-and-bust cycle and lead to durable resistance.


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