RNA-seq analysis of Rhizoctonia solani AG-4HGI strain BJ-1H infected by a new viral strain of Rhizoctonia solani partitivirus 2 reveals a potential mechanism for hypovirulence

2021 ◽  
Author(s):  
Yuting Li ◽  
Siwei Li ◽  
Zhijian Liang ◽  
Qingnian Cai ◽  
Tao Zhou ◽  
...  
Keyword(s):  
Cell Wall ◽  
Rhizoctonia Solani ◽  
Causal Agent ◽  
Sequencing Analysis ◽  
Rice Sheath Blight ◽  
Potential Mechanism ◽  
Rna Seq ◽  
Cell Wall Degrading Enzymes ◽  
Host Fungus ◽  
Free Strain

Rhizoctonia solani partitivirus 2 (RsPV2), in the genus Alphapartitivirus, confers hypovirulence on Rhizoctonia solani AG-1-IA, the causal agent of rice sheath blight. In this study, a new strain of RsPV2 obtained from R. solani AG-4HGI strain BJ-1H, the causal agent of black scurf on potato, was identified and designated as Rhizoctonia solani partitivirus 2 strain BJ-1H (RsPV2-BJ). An RNA sequencing analysis of strain BJ-1H and the virus RsPV2-BJ-free strain BJ-1H-VF derived from strain BJ-1H was conducted to investigate the potential molecular mechanism of hypovirulence induced by RsPV2-BJ. In total, 14319 unigenes were obtained, and 1341 unigenes were identified as differentially expressed genes (DEGs), with 570 DEGs being down-regulated and 771 being up-regulated. Notably, several up-regulated DEGs were annotated to cell-wall-degrading enzymes, including β-1,3-glucanases. Strain BJ-1H exhibited increased expression of β-1,3-glucanase following RsPV2-BJ infection, suggesting that cell wall autolysis activity in R. solani AG-4HGI strain BJ-1H might be promoted by RsPV2-BJ, inducing hypovirulence in its host fungus R. solani AG-4HGI. To the best of our knowledge, this is the first report on the potential mechanism of hypovirulence induced by a mycovirus in R. solani.

scholarly journals MAPK cascades mediating Trichoderma brevicrassum strain TC967 against phytopathogen Rhizoctonia solani

2021 ◽  
Author(s):  
Yi Zhang ◽  
Wen-Ying Zhuang
Keyword(s):  
Cell Wall ◽  
Rhizoctonia Solani ◽  
Biological Control Agent ◽  
Hyphal Growth ◽  
Control Agent ◽  
Mitogen Activated Protein Kinase ◽  
Cell Wall Degrading Enzymes ◽  
Gene Expressions ◽  
Fungal Cell ◽  
Mapk Cascades

Trichoderma brevicrassum strain TC967 is a novel biological control agent (BCA) against the plant pathogen Rhizoctonia solani and promotes plant growth. MAPK (mitogen-activated protein kinase) cascades were involved in biocontrol by Trichoderma, but functions of each MAPK in regulating biocontrol have not been characterized in one Trichoderma. In this study, we assembled and annotated the genome of strain TC967, and identified its three MAPK gene sequences. Functions of Fus3-, Slt2- and Hog1-MAPK in strain TC967 were dissected. The three MAPKs were all involved in hyphal growth. The Hog1-MAPK was essential for conidiation and tolerance to hyperosmotic stress. The Fus3- and Slt2-MAPK both mediated cell-wall integrity (CWI) and activities of chitinase and protease. The Fus3- and Hog1-MAPK mediated response to oxidative stress. Our biocontrol assays demonstrated that the Fus3- and Slt2-MAPK mutants were considerably more effective in disease control than the wild-type strain. RNA-seq analysis revealed that MAPK collectively played a major role in regulating biocontrol-related gene expressions, including of the genes in charge of secondary metabolism, fungal cell wall-degrading enzymes (FCWDEs) and small secreted cysteine-rich proteins (SSCPs).

Characterization of Cell Wall Degrading Enzymes of Rhizoctonia solani AG-3 from Tobacco Target Spot

2014 ◽  
Vol 1010-1012 ◽  
pp. 1161-1164
Author(s):  
Yan Qin Zhao ◽  
Yuan Hua Wu ◽  
Xiu Xiang Zhao ◽  
Meng Nan An ◽  
Jian Guang Chen ◽  
...  
Keyword(s):  
Cell Wall ◽  
Rhizoctonia Solani ◽  
Cell Wall Degrading Enzymes ◽  
Degrading Enzymes ◽  
Yield And Quality ◽  
Target Spot ◽  
Causal Pathogen

Rhizoctonia solaniKühn is a causal pathogen responsible for many types of plant disease worldwide and a major soilborne fungal pathogen that severely impairs yield and quality of tobacco worldwide. Activities, pathogenicity of the cell wall-degrading enzymes produced by theRhizoctoniasolanifrom tobacco target spot disease both in liquid medium and in tobacco tissue were studied. The result showed thatR.solanifrom tobacco can produce pectinase and cellulase both in vitro and vivo, and the activity of PG and PMG was the highest in vitro. The activity of Cx and β-glucosidase was the highest in vivo, and enzyme production ability of strong pathogenicity strains is stronger than the weak pathogenicity strains in vitro.

Effect of the herbicide Pyradur on host cell wall degradation by the sugarbeet pathogens Rhizoctonia solani and Sclerotium rolfsii

1996 ◽  
Vol 74 (9) ◽  
pp. 1407-1415 ◽  
Author(s):  
Mohamed S. El-Abyad ◽  
Amira M. Abu-Taleb ◽  
Tarek Abdel-Mawgood
Keyword(s):  
Cell Wall ◽  
Rhizoctonia Solani ◽  
Sclerotium Rolfsii ◽  
Pectate Lyase ◽  
Inoculum Potential ◽  
Cell Wall Degrading Enzymes ◽  
Degrading Enzymes ◽  
Alkaline Conditions

Pyradur applied to soil at 0.6–2.4 µg∙g−1 active ingredients suppressed infection of three sugarbeet cultivars by Rhizoctonia solani and Sclerotium rolfsii. In the absence of Pyradur, R. solani was more virulent than S. rolfsii against 'Raspoly' and 'TOP', whereas S. rolfsii was more virulent than R. solani against ‘Tribel’. Virulence was directly correlated with the activities of cell wall degrading enzymes produced by mese pathogens in vivo and on cell walls in vitro. Reduced virulence of R. solani and S. rolfsii under Pyradur stress was due to decreased inoculum potential of the two pathogens at the utilized concentrations of herbicide in situ and to reduced production of cell wall degrading enzymes in vitro and in host tissues. In addition, shifts in the pH of cell wall amended media, because of changes in the nature of metabolic products of the pathogens under Pyradur stress, suggest possible repression or stimulation of the activity of the enzymes involved in degradation in vivo, of which cellulase and polygalacturonase are favoured by acid conditions, and galactanase, mannase, and pectate lyase are favoured by alkaline conditions. Keywords: sugarbeet, Rhizoctonia solani, Sclerotium rolfsii, Pyradur, metolachlor, chloridazon, growth activities, pathogenicity, virulence, cell wall enzymes.

scholarly journals Expression of the pathogenesis related proteins, NH-1, PAL, and lipoxygenase in the iranian Tarom and Khazar rice cultivars, in reaction to Rhizoctonia solani – the causal agent of rice sheath blight

2014 ◽  
Vol 54 (1) ◽  
pp. 36-43 ◽  
Author(s):  
Mohammad Sayari ◽  
Valiollah Babaeizad ◽  
Mohammad Ali Tajick Ghanbari ◽  
Heshmat Rahimian
Keyword(s):  
Rhizoctonia Solani ◽  
Defense Responses ◽  
Sheath Blight ◽  
Causal Agent ◽  
Post Inoculation ◽  
Rice Sheath Blight ◽  
Defense Genes ◽  
Pr Genes ◽  
Pathogenesis Related ◽  
Expression Rate

Abstract Pathogenesis related (PR) genes of rice are among the most important defense genes in the interaction of rice with pathogens. In this study, the role of NH-1, several PR genes, phenylalanine ammonia-lyase (PAL), and lipoxygenase in the defense responses of rice against Rhizoctonia solani, the causal agent of rice sheath blight disease, was evaluated. The Tarom and Khazar cultivars (cvs), as resistant and susceptible genotypes, respectively, were used. The expression rate of defense genes in two-week-old seedlings inoculated with a virulent isolate of R. solani AG-I-1 A was investigated. The lesions in the Tarom cv were less than half the size of those on the Khazar cv. The expression scripts of the genes were calculated by quantative Real-Time PCR (RT-PCR). Results showed that the expression rate of all genes in the resistant cultivar was higher than that of the susceptible genotype, post inoculation. Analysis of data by the t-Student test also indicated significant differences in the expression level of the genes between Khazar and Tarom. The results of this study suggest that the investigated genes are involved in the resistance responses of rice against the sheath blight agent. For the first time, the induction of PR-5, PR-9, PR-10, PR-12, PR-13, and NH-1 was observed in this study in the resistant and susceptible Iranian cultivars of rice following attacks by R. solani.

scholarly journals IPA-1 a Putative Chromatin Remodeler/Helicase-Related Protein of Trichoderma virens Plays Important Roles in Antibiosis Against Rhizoctonia solani and Induction of Arabidopsis Systemic Disease Resistance

2020 ◽  
Vol 33 (6) ◽  
pp. 808-824 ◽  
Author(s):  
Magnolia Estrada-Rivera ◽  
Miguel Ángel Hernández-Oñate ◽  
Mitzuko Dautt-Castro ◽  
José de Jesús Gallardo-Negrete ◽  
Oscar Guillermo Rebolledo-Prudencio ◽  
...  
Keyword(s):  
Cell Wall ◽  
Rhizoctonia Solani ◽  
Pseudomonas Syringae ◽  
Systemic Disease ◽  
Copper Ion ◽  
Trichoderma Virens ◽  
Cell Wall Degrading Enzymes ◽  
Trichoderma Spp ◽  
Transcriptomic Response ◽  
Degrading Enzymes

Trichoderma spp. are filamentous fungi that colonize plant roots conferring beneficial effects to plants, either indirectly through the induction of their defense systems or directly through the suppression of phytopathogens in the rhizosphere. Transcriptomic analyses of Trichoderma spp. emerged as a powerful method for identifying the molecular events underlying the establishment of this beneficial relationship. Here, we focus on the transcriptomic response of Trichoderma virens during its interaction with Arabidopsis seedlings. The main response of T. virens to cocultivation with Arabidopsis was the repression of gene expression. The biological processes of transport and metabolism of carbohydrates were downregulated, including a set of cell wall–degrading enzymes putatively relevant for root colonization. Repression of such genes reached their basal levels at later times in the interaction, when genes belonging to the biological process of copper ion transport were induced, a necessary process providing copper as a cofactor for cell wall–degrading enzymes with the auxiliary activities class. RNA-Seq analyses showed the induction of a member of the SNF2 family of chromatin remodelers/helicase-related proteins, which was named IPA-1 (increased protection of Arabidopsis-1). Sequence analyses of IPA-1 showed its closest relatives to be members of the Rad5/Rad16 and SNF2 subfamilies; however, it grouped into a different clade. Although deletion of IPA-1 in T. virens did not affect its growth, the antibiotic activity of Δipa-1 culture filtrates against Rhizoctonia solani diminished but it remained unaltered against Botrytis cinerea. Triggering of the plant defense genes in plants treated with Δipa-1 was higher, showing enhanced resistance against Pseudomonas syringae but not against B. cinerea as compared with the wild type.

Isolation and characterization of a melanin from Rhizoctonia solani, the causal agent of rice sheath blight

2015 ◽  
Vol 142 (2) ◽  
pp. 281-290 ◽  
Author(s):  
Jianyi Chen ◽  
Chenjiaozi Wang ◽  
Canwei Shu ◽  
Minghai Zhu ◽  
Erxun Zhou
Keyword(s):  
Rhizoctonia Solani ◽  
Sheath Blight ◽  
Causal Agent ◽  
Rice Sheath Blight ◽  
Isolation And Characterization

scholarly journals Deciphering the differential physiological and molecular requirements for conidial anastomosis tube fusion and germ tube formation in Colletotrichum gloeosporioides

2021 ◽  
Author(s):  
Nikita Mehta ◽  
Ravindra Patil ◽  
Abhishek Baghela
Keyword(s):  
Cell Wall ◽  
Germ Tube ◽  
Colletotrichum Gloeosporioides ◽  
Hyphal Growth ◽  
Tube Formation ◽  
Cell Wall Degrading Enzymes ◽  
Asexual Fungi ◽  
Host Fungus ◽  
Whole Transcriptome Analysis ◽  
Exclusive Processes

AbstractThe conidia of a hemibiotrophic fungus Colletotrichum gloeosporioides can conventionally form germ tube (GT) and develop in to a fungal colony, while under certain conditions, they tend to get connected with each other through conidial anastomosis tube (CAT) so as to share the nutrients. CAT fusion is believed to be responsible for generation of genetic variations in few asexual fungi, which appears problematic for effective fungal disease management. The physiological and molecular mechanism underlying the GT versus CAT formation remained unexplored. In the present study, we have deciphered the decision switch responsible for GT formation versus CAT fusion in C. gloeosporioides. GT formation occurred at high frequency in the presence of nutrients, while CAT fusion was found to be higher in absence of nutrients. Younger conidia were found to form GT efficiently, whilst older conidia preferentially formed CAT. Whole transcriptome analysis of GT and CAT fusion revealed differential molecular requirements for these two processes. We identified 11050 and 9786 differentially expressed genes (DEGs) in GT and CAT, respectively. A total 1567 effector candidates were identified, of them 103 and 101 were uniquely secreted during GT and CAT formation respectively. Genes coding for cell wall degrading enzymes, germination, hyphal growth, host-fungus interaction and virulence were up-regulated during GT formation. Whilst, genes involved in stress response, cell wall remodelling, membrane transport, cytoskeleton, cell cycle, and cell rescue were highly up-regulated during CAT fusion. To conclude, the GT and CAT fusion were found to be mutually exclusive processes, requiring differential physiological conditions and sets of DEGs in C. gloeosporioides. This will help to understand the basic CAT biology in the genus Colletotrichum.

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