scholarly journals Inferring Gene Regulatory Mechanisms from Microarray Data Using Latent Semantic Indexing of MEDLINE Abstracts: The role of Rel in type‐I interferon signaling

2006 ◽  
Vol 20 (5) ◽  
Author(s):  
Lai Wei ◽  
Lijing Xu ◽  
Kevin Heinrich ◽  
Michael Berry ◽  
Ramin Homayouni
2019 ◽  
Vol 33 (S1) ◽  
Author(s):  
Jourdan Brune ◽  
Mary Chang ◽  
Jessica Felgenhauer ◽  
Brian Johnson ◽  
Megan Larmore ◽  
...  

Author(s):  
Benjamin Goldman-Israelow ◽  
Eric Song ◽  
Tianyang Mao ◽  
Peiwen Lu ◽  
Amit Meir ◽  
...  

2000 ◽  
Vol 275 (31) ◽  
pp. 23981-23985 ◽  
Author(s):  
Dean Russell-Harde ◽  
T. Charis Wagner ◽  
M. R. Sandhya Rani ◽  
David Vogel ◽  
Oscar Colamonici ◽  
...  

2020 ◽  
Vol 11 (1) ◽  
Author(s):  
Hale Tunbak ◽  
Rocio Enriquez-Gasca ◽  
Christopher H. C. Tie ◽  
Poppy A. Gould ◽  
Petra Mlcochova ◽  
...  

Abstract The Human Silencing Hub (HUSH) complex is necessary for epigenetic repression of LINE-1 elements. We show that HUSH-depletion in human cell lines and primary fibroblasts leads to induction of interferon-stimulated genes (ISGs) through JAK/STAT signaling. This effect is mainly attributed to MDA5 and RIG-I sensing of double-stranded RNAs (dsRNAs). This coincides with upregulation of primate-conserved LINE-1s, as well as increased expression of full-length hominid-specific LINE-1s that produce bidirectional RNAs, which may form dsRNA. Notably, LTRs nearby ISGs are derepressed likely rendering these genes more responsive to interferon. LINE-1 shRNAs can abrogate the HUSH-dependent response, while overexpression of an engineered LINE-1 construct activates interferon signaling. Finally, we show that the HUSH component, MPP8 is frequently downregulated in diverse cancers and that its depletion leads to DNA damage. These results suggest that LINE-1s may drive physiological or autoinflammatory responses through dsRNA sensing and gene-regulatory roles and are controlled by the HUSH complex.


2003 ◽  
Vol 279 (2) ◽  
pp. 970-979 ◽  
Author(s):  
Yongzhong Li ◽  
Antonella Sassano ◽  
Beata Majchrzak ◽  
Dilip K. Deb ◽  
David E. Levy ◽  
...  

2021 ◽  
Vol 22 (3) ◽  
pp. 1301
Author(s):  
Ioannis Kienes ◽  
Tanja Weidl ◽  
Nora Mirza ◽  
Mathias Chamaillard ◽  
Thomas A. Kufer

Type I interferon signaling contributes to the development of innate and adaptive immune responses to either viruses, fungi, or bacteria. However, amplitude and timing of the interferon response is of utmost importance for preventing an underwhelming outcome, or tissue damage. While several pathogens evolved strategies for disturbing the quality of interferon signaling, there is growing evidence that this pathway can be regulated by several members of the Nod-like receptor (NLR) family, although the precise mechanism for most of these remains elusive. NLRs consist of a family of about 20 proteins in mammals, which are capable of sensing microbial products as well as endogenous signals related to tissue injury. Here we provide an overview of our current understanding of the function of those NLRs in type I interferon responses with a focus on viral infections. We discuss how NLR-mediated type I interferon regulation can influence the development of auto-immunity and the immune response to infection.


2021 ◽  
Author(s):  
Manuel F López-Aranda ◽  
Gayle M Boxx ◽  
Miranda Phan ◽  
Karen Bach ◽  
Rochelle Mandanas ◽  
...  

Tuberous Sclerosis Complex (TSC) is a genetic disorder associated with high rates of intellectual disability and autism. Although previous studies focused on the role of neuronal deficits in the memory phenotypes of rodent models of TSC, the results presented here demonstrate a role for microglia in these deficits. Mice with a heterozygous null mutation of the Tsc2 gene (Tsc2+/-), show deficits in hippocampal dependent tasks, as well as abnormal long-term potentiation (LTP) in the hippocampal CA1 region. Here, we show that microglia and type I interferon signaling (IFN1) have a key role in the object place recognition (OPR; a hippocampal dependent task) deficits and abnormal LTP of Tsc2+/- male mice. Unexpectedly, we demonstrate that male, but not female, Tsc2+/- mice showed OPR deficits. Importantly, these deficits can be rescued by depletion of microglia, as well as by a genetic manipulation of a signaling pathway known to modulate microglia function (interferon-alpha/beta receptor alpha chain null mutation). In addition to rescuing the OPR deficits, depletion of microglia also reversed the abnormal LTP of the Tsc2+/- mice. Altogether, our results suggest that altered IFN1 signaling in microglia cause the abnormal LTP and OPR deficits of male Tsc2+/- mice.


Cell Reports ◽  
2015 ◽  
Vol 11 (4) ◽  
pp. 605-617 ◽  
Author(s):  
Diana Saleiro ◽  
Swarna Mehrotra ◽  
Barbara Kroczynska ◽  
Elspeth M. Beauchamp ◽  
Pawel Lisowski ◽  
...  

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