scholarly journals Self-generated persistent random forces drive phase separation in growing tumors

2020 ◽  
Author(s):  
Sumit Sinha ◽  
D. Thirumalai

A single solid tumor, composed of nearly identical cells, exhibits heterogeneous dynamics. Cells dynamics in the core is glass-like whereas those in the periphery undergo diffusive or super-diffusive behavior. Quantification of heterogeneity using the mean square displacement or the self-intermediate scattering function, which involves averaging over the cell population, hides the complexity of the collective movement. Using the t-distributed stochastic neighbor embedding (t-SNE), a popular unsupervised machine learning dimensionality reduction technique, we show that the phase space structure of an evolving colony of cells, driven by cell division and apoptosis, partitions into nearly disjoint sets composed principally of core and periphery cells. The non-equilibrium phase separation is driven by the differences in the persistence of self-generated active forces induced by cell division. Extensive heterogeneity revealed by t-SNE paves way towards understanding the origins of intratumor heterogeneity using experimental imaging data.

2020 ◽  
Vol 501 (1) ◽  
pp. 1511-1519
Author(s):  
Junjie Luo ◽  
Weipeng Lin ◽  
Lili Yang

ABSTRACT Symplectic algorithms are widely used for long-term integration of astrophysical problems. However, this technique can only be easily constructed for separable Hamiltonian, as preserving the phase-space structure. Recently, for inseparable Hamiltonian, the fourth-order extended phase-space explicit symplectic-like methods have been developed by using the Yoshida’s triple product with a mid-point map, where the algorithm is more effective, stable and also more accurate, compared with the sequent permutations of momenta and position coordinates, especially for some chaotic case. However, it has been found that, for the cases such as with chaotic orbits of spinning compact binary or circular restricted three-body system, it may cause secular drift in energy error and even more the computation break down. To solve this problem, we have made further improvement on the mid-point map with a momentum-scaling correction, which turns out to behave more stably in long-term evolution and have smaller energy error than previous methods. In particular, it could obtain a comparable phase-space distance as computing from the eighth-order Runge–Kutta method with the same time-step.


2021 ◽  
Vol 22 (19) ◽  
pp. 10267
Author(s):  
Yiqing Zhang ◽  
Heyang Wei ◽  
Wenyu Wen

Asymmetric cell division (ACD) of neural stem cells and progenitors not only renews the stem cell population but also ensures the normal development of the nervous system, producing various types of neurons with different shapes and functions in the brain. One major mechanism to achieve ACD is the asymmetric localization and uneven segregation of intracellular proteins and organelles into sibling cells. Recent studies have demonstrated that liquid-liquid phase separation (LLPS) provides a potential mechanism for the formation of membrane-less biomolecular condensates that are asymmetrically distributed on limited membrane regions. Moreover, mechanical forces have emerged as pivotal regulators of asymmetric neural stem cell division by generating sibling cell size asymmetry. In this review, we will summarize recent discoveries of ACD mechanisms driven by LLPS and mechanical forces.


2009 ◽  
Vol 324 (1) ◽  
pp. 53-72 ◽  
Author(s):  
A.B. Klimov ◽  
J.L. Romero ◽  
G. Björk ◽  
L.L. Sánchez-Soto

Polymer ◽  
1991 ◽  
Vol 32 (2) ◽  
pp. 272-278 ◽  
Author(s):  
M. Nishimoto ◽  
H. Keskkula ◽  
D.R. Paul

2010 ◽  
Vol 374 (43) ◽  
pp. 4385-4392 ◽  
Author(s):  
Fernando Nicacio ◽  
Raphael N.P. Maia ◽  
Fabricio Toscano ◽  
Raúl O. Vallejos

2020 ◽  
Vol 295 (18) ◽  
pp. 5850-5856 ◽  
Author(s):  
Virender Singh ◽  
Ling Xu ◽  
Solomiia Boyko ◽  
Krystyna Surewicz ◽  
Witold K. Surewicz

Tau is a microtubule-associated protein that plays a major role in Alzheimer's disease (AD) and other tauopathies. Recent reports indicate that, in the presence of crowding agents, tau can undergo liquid–liquid phase separation (LLPS), forming highly dynamic liquid droplets. Here, using recombinantly expressed proteins, turbidimetry, fluorescence microscopy imaging, and fluorescence recovery after photobleaching (FRAP) assays, we show that the divalent transition metal zinc strongly promotes this process, shifting the equilibrium phase boundary to lower protein or crowding agent concentrations. We observed no tau LLPS-promoting effect for any other divalent transition metal ions tested, including Mn2+, Fe2+, Co2+, Ni2+, and Cu2+. We also demonstrate that multiple zinc-binding sites on tau are involved in the LLPS-promoting effect and provide insights into the mechanism of this process. Zinc concentration is highly elevated in AD brains, and this metal ion is believed to be an important player in the pathogenesis of this disease. Thus, the present findings bring a new dimension to understanding the relationship between zinc homeostasis and the pathogenic process in AD and related neurodegenerative disorders.


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