scholarly journals A genome-annotated bacterial collection of the barley rhizosphere microbiota

2021 ◽  
Author(s):  
Senga Robertson-Albertyn ◽  
Federico Concas ◽  
Lynn H Brown ◽  
Jamie N Orr ◽  
James C Abbott ◽  
...  
Keyword(s):  
Plant Growth ◽  
Genomic Analysis ◽  
Comparative Genomic Analysis ◽  
Comparative Genomic ◽  
Strain Specificity ◽  
Bacterial Microbiota ◽  
A Genome ◽  
Plant Growth Promoting ◽  
Plant Microbiota ◽  
Growth Promoting

ABSTRACTWe generated a bacterial collection from the rhizosphere of cultivated barley (Hordeum vulgare L. ssp. vulgare) to assess taxonomic distribution of culturable members of the barley microbiota and their plant growth-promoting potential. From this we retrieved strains belonging to the dominant phyla of the plant microbiota— Actinobacteria, Bacteroidetes, Firmicutes and Proteobacteria—and gathered evidence they code for functional genes implicated in nitrogen fixation, hydrogen cyanide channels and phosphate solubilisation. Here we present an initial comparative genomic analysis of the collection revealing that plant growth-promoting potential of the culturable barley bacterial microbiota appears to have a relatively broad phylogenetic base while retaining some strain-specificity.

Genomic analysis of a Pseudomonas strain with multiple plant growth promoting properties

Rhizosphere ◽  
2021 ◽  
pp. 100342
Author(s):  
Olubukola Oluranti Babalola ◽  
Oluwaseun Adeyinka Fasusi ◽  
Adenike Eunice Amoo ◽  
Ayansina Segun Ayangbenro
Keyword(s):  
Plant Growth ◽  
Genomic Analysis ◽  
Plant Growth Promoting ◽  
Growth Promoting

scholarly journals Genomic characterization and computational phenotyping of nitrogen-fixing bacteria isolated from Colombian sugarcane fields

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Luz K. Medina-Cordoba ◽  
Aroon T. Chande ◽  
Lavanya Rishishwar ◽  
Leonard W. Mayer ◽  
Lina C. Valderrama-Aguirre ◽  
...  
Keyword(s):  
Antibiotic Resistance ◽  
Nitrogen Fixation ◽  
Plant Growth ◽  
Phosphate Solubilization ◽  
Nitrogen Fixing ◽  
Nitrogen Fixing Bacteria ◽  
Promising Tool ◽  
A Genome ◽  
Plant Growth Promoting ◽  
Growth Promoting

AbstractPrevious studies have shown the sugarcane microbiome harbors diverse plant growth promoting microorganisms, including nitrogen-fixing bacteria (diazotrophs), which can serve as biofertilizers. The genomes of 22 diazotrophs from Colombian sugarcane fields were sequenced to investigate potential biofertilizers. A genome-enabled computational phenotyping approach was developed to prioritize sugarcane associated diazotrophs according to their potential as biofertilizers. This method selects isolates that have potential for nitrogen fixation and other plant growth promoting (PGP) phenotypes while showing low risk for virulence and antibiotic resistance. Intact nitrogenase (nif) genes and operons were found in 18 of the isolates. Isolates also encode phosphate solubilization and siderophore production operons, and other PGP genes. The majority of sugarcane isolates showed uniformly low predicted virulence and antibiotic resistance compared to clinical isolates. Six strains with the highest overall genotype scores were experimentally evaluated for nitrogen fixation, phosphate solubilization, and the production of siderophores, gibberellic acid, and indole acetic acid. Results from the biochemical assays were consistent and validated computational phenotype predictions. A genotypic and phenotypic threshold was observed that separated strains by their potential for PGP versus predicted pathogenicity. Our results indicate that computational phenotyping is a promising tool for the assessment of bacteria detected in agricultural ecosystems.

scholarly journals Characterization of a Versatile Plant Growth-Promoting Rhizobacterium Pseudomonas mediterranea Strain S58

2020 ◽  
Vol 8 (3) ◽  
pp. 334
Author(s):  
Yilin Gu ◽  
Jing Wang ◽  
Zhenyuan Xia ◽  
Hai-Lei Wei
Keyword(s):  
Cell Death ◽  
Plant Growth ◽  
Bacterial Genome ◽  
Gene Clusters ◽  
Marker Genes ◽  
Circular Chromosome ◽  
A Genome ◽  
Sharp Eyespot ◽  
Plant Growth Promoting ◽  
Growth Promoting

Plant growth-promoting rhizobacterial strain S58 was isolated from the tobacco rhizosphere. It showed strong antagonism against a battery of plant pathogenic fungi and bacteria, and controlled wheat sharp eyespot and tobacco wildfire diseases efficiently. Further tests showed that strain S58 solubilized organic phosphate and produced siderophore, protease, ammonia, and indole-3-acetic acid. In Arabidopsis thaliana, it promoted plant growth and changed root system architecture by restricting the growth of primary roots and increasing lateral root numbers. We relied on morphological, biochemical, physiological characteristics, and molecular phylogenic analysis to identify strain S58 as Pseudomonas mediterranea. The complete genome of strain S58 has a single circular chromosome of 6,150,838 bp with a 61.06% G+C content. The bacterial genome contained 5,312 predicted genes with an average length of 992.90 bp. A genome analysis suggested that P. mediterranea S58 was a rich cyclic lipopeptide (CLP)-producing strain that possessed seven non-ribosomal peptide gene clusters for CLP synthesis. Leaf inoculation of the bacterial culture and supernatants triggered cell death-like immunity in tobacco. Quantitative real-time PCR assays showed that the strain S58 induced the expression of pattern-triggered immunity and cell death marker genes, but not jasmonic acid marker genes. The results suggested that P. mediterranea S58 is a novel, versatile plant growth-promoting agent with multiple beneficial traits for plants.

scholarly journals Comprehensive genomic analysis of a plant growth-promoting rhizobacterium Pantoea agglomerans strain P5

2017 ◽  
Vol 7 (1) ◽  
Author(s):  
Vahid Shariati J. ◽  
Mohammad Ali Malboobi ◽  
Zeinab Tabrizi ◽  
Elahe Tavakol ◽  
Parviz Owlia ◽  
...  
Keyword(s):  
Plant Growth ◽  
Genomic Analysis ◽  
Pantoea Agglomerans ◽  
Plant Growth Promoting ◽  
Growth Promoting

scholarly journals Mycorrhizal-Bacterial Amelioration of Plant Abiotic and Biotic Stress

2021 ◽  
Vol 5 ◽  
Author(s):  
Gustavo Santoyo ◽  
Elisa Gamalero ◽  
Bernard R. Glick
Keyword(s):  
Plant Growth ◽  
Mycorrhizal Fungi ◽  
Synergistic Effects ◽  
Plant Stress ◽  
Plant Growth Promoting Bacteria ◽  
Abiotic And Biotic Stress ◽  
Different Types ◽  
Plant Growth Promoting ◽  
Plant Microbiota ◽  
Growth Promoting

Soil microbiota plays an important role in the sustainable production of the different types of agrosystems. Among the members of the plant microbiota, mycorrhizal fungi (MF) and plant growth-promoting bacteria (PGPB) interact in rhizospheric environments leading to additive and/or synergistic effects on plant growth and heath. In this manuscript, the main mechanisms used by MF and PGPB to facilitate plant growth are reviewed, including the improvement of nutrient uptake, and the reduction of ethylene levels or biocontrol of potential pathogens, under both normal and stressful conditions due to abiotic or biotic factors. Finally, it is necessary to expand both research and field use of bioinoculants based on these components and take advantage of their beneficial interactions with plants to alleviate plant stress and improve plant growth and production to satisfy the demand for food for an ever-increasing human population.

scholarly journals Root-specific camalexin biosynthesis controls the plant growth-promoting effects of multiple bacterial strains

2019 ◽  
Vol 116 (31) ◽  
pp. 15735-15744 ◽  
Author(s):  
Anna Koprivova ◽  
Stefan Schuck ◽  
Richard P. Jacoby ◽  
Irene Klinkhammer ◽  
Bastian Welter ◽  
...  
Keyword(s):  
Plant Growth ◽  
Growth Promotion ◽  
Bacterial Strains ◽  
Natural Ecosystems ◽  
Promoting Effect ◽  
Gene Encoding ◽  
A Genome ◽  
Sulfatase Activity ◽  
Plant Growth Promoting ◽  
Growth Promoting

Plants in their natural ecosystems interact with numerous microorganisms, but how they influence their microbiota is still elusive. We observed that sulfatase activity in soil, which can be used as a measure of rhizosphere microbial activity, is differently affected by Arabidopsis accessions. Following a genome-wide association analysis of the variation in sulfatase activity we identified a candidate gene encoding an uncharacterized cytochrome P450, CYP71A27. Loss of this gene resulted in 2 different and independent microbiota-specific phenotypes: A lower sulfatase activity in the rhizosphere and a loss of plant growth-promoting effect by Pseudomonas sp. CH267. On the other hand, tolerance to leaf pathogens was not affected, which agreed with prevalent expression of CYP71A27 in the root vasculature. The phenotypes of cyp71A27 mutant were similar to those of cyp71A12 and cyp71A13, known mutants in synthesis of camalexin, a sulfur-containing indolic defense compound. Indeed, the cyp71A27 mutant accumulated less camalexin in the roots upon elicitation with silver nitrate or flagellin. Importantly, addition of camalexin complemented both the sulfatase activity and the loss of plant growth promotion by Pseudomonas sp. CH267. Two alleles of CYP71A27 were identified among Arabidopsis accessions, differing by a substitution of Glu373 by Gln, which correlated with the ability to induce camalexin synthesis and to gain fresh weight in response to Pseudomonas sp. CH267. Thus, CYP71A27 is an additional component in the camalexin synthesis pathway, contributing specifically to the control of plant microbe interactions in the root.

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