scholarly journals Partitioning the temporal changes in abundance-based beta diversity into loss and gain components

2021 ◽  
Author(s):  
Shinichi Tatsumi ◽  
Ryosuke Iritani ◽  
Marc W Cadotte

Spatial variation in species composition, or beta diversity, plays a central role in gauging the structure of ecological communities. Here, we develop a new numerical method to partition the impacts of abundance losses and gains on the temporal changes in spatial beta diversity. We show that the temporal changes in pairwise dissimilarity measures (Ruzka and Bray-Curtis indices) and a multiple-site measure (normalized Whittaker's beta) can be partitioned into six terms that reflect the losses and gains in species abundance. Our new method provides a unified approach to disentangle the temporal dynamics of spatial community structure by means of either incidence- or abundance-based data.

Mathematics ◽  
2018 ◽  
Vol 6 (11) ◽  
pp. 250 ◽  
Author(s):  
János Podani ◽  
Sandrine Pavoine ◽  
Carlo Ricotta

Community structure as summarized by presence–absence data is often evaluated via diversity measures by incorporating taxonomic, phylogenetic and functional information on the constituting species. Most commonly, various dissimilarity coefficients are used to express these aspects simultaneously such that the results are not comparable due to the lack of common conceptual basis behind index definitions. A new framework is needed which allows such comparisons, thus facilitating evaluation of the importance of the three sources of extra information in relation to conventional species-based representations. We define taxonomic, phylogenetic and functional beta diversity of species assemblages based on the generalized Jaccard dissimilarity index. This coefficient does not give equal weight to species, because traditional site dissimilarities are lowered by taking into account the taxonomic, phylogenetic or functional similarity of differential species in one site to the species in the other. These, together with the traditional, taxon- (species-) based beta diversity are decomposed into two additive fractions, one due to taxonomic, phylogenetic or functional excess and the other to replacement. In addition to numerical results, taxonomic, phylogenetic and functional community structure is visualized by 2D simplex or ternary plots. Redundancy with respect to taxon-based structure is expressed in terms of centroid distances between point clouds in these diagrams. The approach is illustrated by examples coming from vegetation surveys representing different ecological conditions. We found that beta diversity decreases in the following order: taxon-based, taxonomic (Linnaean), phylogenetic and functional. Therefore, we put forward the beta-redundancy hypothesis suggesting that this ordering may be most often the case in ecological communities, and discuss potential reasons and possible exceptions to this supposed rule. Whereas the pattern of change in diversity may be indicative of fundamental features of the particular community being studied, the effect of the choice of functional traits—a more or less subjective element of the framework—remains to be investigated.


2021 ◽  
Vol 0 (0) ◽  
Author(s):  
Ricardo A. Scrosati ◽  
Alexis M. Catalán ◽  
Nelson Valdivia

Abstract Species diversity in a habitat is often termed alpha diversity. As it influences various community properties, many studies have investigated its drivers. For instance, intertidal macroalgal canopies limit understory thermal stress during low tides and thus often increase alpha diversity. More recently, beta diversity has also become of interest. Beta diversity measures the change in species composition across space and is another important attribute of communities because it influences their multifunctionality, productivity, and resilience. Using data from a field experiment done in Atlantic Canada, we tested the hypothesis that fucoid macroalgal canopies limit beta diversity in intertidal communities. This prediction stems from previous evidence that such canopies limit thermal variation across the substrate during low tides, an important consideration because spatial thermal changes influence spatial variability in species composition. To test our hypothesis, we compared two treatments (full canopy cover and canopy removal) created the year before on intertidal areas that were originally all fully covered by canopies. Separately for each treatment, we calculated beta diversity as the Bray-Curtis dissimilarity between nearby quadrats using species abundance data. Overall, fucoid macroalgal canopies significantly reduced beta diversity, showing that these foundation species can have opposing effects on alpha and beta diversity.


Author(s):  
Leilane T. Fatoreto Schwind ◽  
Rodrigo L. Arrieira ◽  
Juliana Déo Dias ◽  
Nadson Ressyé Simões ◽  
Claudia Costa Bonecker ◽  
...  

<p>Ecological communities are constantly restructuring in the short and long term in response to population dynamics and environmental variables. This study evaluated the structure of arcellinid and euglyphid testate amoebae planktonic communities in three environments of the Upper Paraná River basin, Brazil. We hypothesised that the community structure of testate amoebae is differentially influenced by environmental conditions, mainly in isolated lentic ecosystems, due the effect of the low-water period. In addition, we predicted that the response of testate amoeba communities to environmental changes is also affected by the distinct hydrodynamic characteristics of the environment. Plankton were sampled in the low- and high-water periods, and physical and chemical variables were calculated for each site. In order to evaluate the influence of environmental conditions on the variation in testate amoebae community structure over time, a time-lag analytical approach was used and significance was estimated using a Mantel test. A Kendall test coefficient was used to estimate the maintenance of species abundance on each day when sampling was carried out and for each water body. A redundancy analysis was also performed to assess the responses of testate amoeba communities to environmental change in the three studied environments. Bray–Curtis dissimilarity indices were calculated for the testate amoeba communities and the significance of the differences between communities was estimated using a Mantel test. Seventy-five taxa belonging to six families were identified. Environmental conditions influenced the richness, abundance, and dominance pattern of the testate amoebae communities, and distinct hydrodynamic characteristics of the environments affected the establishment of community structure.</p>


2020 ◽  
Author(s):  
Stanislas Rigal ◽  
Vincent Devictor ◽  
Pierre Gaüzère ◽  
Sonia Kéfi ◽  
Jukka T. Forsman ◽  
...  

AbstractAimThe impact of global change on biodiversity is commonly assessed in terms of changes in species distributions, species richness and species composition across communities. Whether and how much interactions between species are also changing is much less documented and mostly limited to local studies of ecological networks. Moreover, we largely ignore how biotic homogenisation (i.e. the replacement of a set of diverse and mainly specialist species by a few generalists) is affecting or being affected by changes in the structure of species interactions. Here, we approximate species interactions with species associations based on the correlation in species spatial co-occurrence to understand the spatio-temporal changes of species interactions and their relationship to biotic homogenisation.LocationFrance.Time period2001-2017.Major taxa studiedCommon breeding birds.MethodsWe use network approaches to build three community-aggregated indices to characterise species associations and we compare them to changes in species composition in communities. We evaluate the spatial distribution and temporal dynamics of these indices in a dataset of bird co-abundances of more than 100 species monitored for 17 years (2001-2017) from 1,969 sites across France. We finally test whether spatial and temporal changes of species associations are related to species homogenisation estimated as the spatio-temporal dynamics of β-diversity.ResultsWe document a non-random spatial distribution of both structure and temporal changes in species association networks. We also report a directional change in species associations linked to β-diversity modifications in space and time, suggesting that biotic homogenisation affects not only species composition but also species associations.Main ConclusionsOur study highlights the importance of evaluating changes of species association networks, in addition to species turnover when studying biodiversity responses to global change.


2014 ◽  
Vol 25 (3-4) ◽  
pp. 53-68
Author(s):  
I. V. Goncharenko ◽  
H. M. Holyk

Cenotic diversity and leading ecological factors of its floristic differentiation were studied on an example of two areas – Kyiv parks "Nivki" and "Teremki". It is shown that in megalopolis the Galeobdoloni-Carpinetum impatientosum parviflorae subassociation is formed under anthropogenic pressure on the typical ecotope of near-Dnieper hornbeam oak forests on fresh gray-forest soils. The degree of anthropogenic transformation of cenofloras can be estimated by the number of species of Robinietea and Galio-Urticetea classes, as well as neophytes and cultivars. Phytoindication for hemeroby index may be also used in calculation. We propose the modified index of biotic dispersion (normalized by alpha-diversity) for the estimation of ecophytocenotic range (beta-diversity) of releves series. We found that alpha-diversity initially increases (due to the invasion of antropophytes) at low level of antropogenic pressure, then it decreases (due to the loss of aboriginal species) secondarily with increasing of human impact. Also we found that beta-diversity (differential diversity) decreases, increasing homogeneity of plant cover, under the influence of anthropogenic factor. Vegetation classification was completed by a new original method of cluster analysis, designated as DRSA («distance-ranked sorting assembling»). The classification quality is suggested to be validated on the "seriation" diagram, which is а distance matrix between objects with gradient filling. Dark diagonal blocks confirm clusters’ density (intracluster compactness), uncolored off-diagonal blocks are evidence in favor of clusters’ isolation (intercluster distinctness). In addition, distinction of clusters (syntaxa) in ordination area suggests their independence. For phytoindication we propose to include only species with more than 10% constancy. Furthermore, for the description of syntaxonomic amplitude we suggest to use 25%-75% interquartile scope instead of mean and standard deviation. It is shown that comparative analysis of syntaxa for each ecofactor is convenient to carry out by using violin (bulb) plots. A new approach to the phytoindication of syntaxa, designated as R-phytoindication, was proposed for our study. In this case, the ecofactor values, calculated for individual releves, are not taken into account, however, the composition of cenoflora with species constancies is used that helps us to minimize for phytoindication the influence of non-typical species. We suggested a syntaxon’s amplitude to be described by more robust statistics: for the optimum of amplitude (central tendency) – by a median (instead of arithmetic mean), and for the range of tolerance – by an interquartile scope (instead of standard deviation). We assesses amplitudes of syntaxa by phytoindication method for moisture (Hd), acidity (Rc), soil nitrogen content (Nt), wetting variability (vHd), light regime (Lc), salt regime (Sl). We revealed no significant differences on these ecofactors among ecotopes of our syntaxa, that proved the variant syntaxonomic rank for all syntaxa. We found that the core of species composition of our phytocenoses consists of plants with moderate requirements for moisture, soil nitrogen, light and salt regime. We prove that the leading factor of syntaxonomic differentiation is hidden anthropogenic, which is not subject to direct measurement. But we detect that hidden factor of "human pressure" was correlated with phytoindication parameters (variables) that can be measured "directly" by species composition of plant communities. The most correlated factors were ecofactors of soil nitrogen, wetting variability, light regime and hemeroby. The last one is the most indicative empirically for the assessment of "human impact". We establish that there is a concept of «hemeroby of phytocenosis» (tolerance to human impact), which can be calculated approximately as the mean or the median of hemeroby scores of individual species which are present in it.


2008 ◽  
Vol 159 (4) ◽  
pp. 80-90 ◽  
Author(s):  
Bogdan Brzeziecki ◽  
Feliks Eugeniusz Bernadzki

The results of a long-term study on the natural forest dynamics of two forest communities on one sample plot within the Białowieża National Park in Poland are presented. The two investigated forest communities consist of the Pino-Quercetum and the Tilio-Carpinetum type with the major tree species Pinus sylvestris, Picea abies, Betula sp., Quercus robur, Tilia cordata and Carpinus betulus. The results reveal strong temporal dynamics of both forest communities since 1936 in terms of tree species composition and of general stand structure. The four major tree species Scots pine, birch, English oak and Norway spruce, which were dominant until 1936, have gradually been replaced by lime and hornbeam. At the same time, the analysis of structural parameters indicates a strong trend towards a homogenization of the vertical stand structure. Possible causes for these dynamics may be changes in sylviculture, climate change and atmospheric deposition. Based on the altered tree species composition it can be concluded that a simple ≪copying≫ (mimicking) of the processes taking place in natural forests may not guarantee the conservation of the multifunctional character of the respective forests.


2020 ◽  
Vol 10 (17) ◽  
pp. 5850
Author(s):  
Jiaojiao Ma ◽  
Ting Zhou ◽  
Chunyu Xu ◽  
Dawen Shen ◽  
Songjun Xu ◽  
...  

Field and laboratory investigations were conducted to characterize bacterial diversity and community structure in a badly contaminated mangrove wetland adjacent to the metropolitan area of a megacity in subtropical China. Next-generation sequencing technique was used for sequencing the V4–V5 region of the 16s rRNA gene on the Illumina system. Collectively, Proteobacteria, Chloroflexi, Planctomycetes, Actinobacteria and Bacteroidetes were the predominant phyla identified in the investigated soils. A significant spatial variation in bacterial diversity and community structure was observed for the investigated mangrove soils. Heavy metal pollution played a key role in reducing the bacterial diversity. The spatial variation in soil-borne heavy metals shaped the spatial variation in bacterial diversity and community structure in the study area. Other environmental factors such as total carbon and total nitrogen in the soils that are affected by seasonal change in temperature could also influence the bacterial abundance, diversity and community structure though the temporal variation was relatively weaker, as compared to spatial variation. The bacterial diversity index was lower in the investigated site than in the comparable reference site with less contaminated status. The community structure in mangrove soils at the current study site was, to a remarkable extent, different from those in the tropical mangrove wetlands around the world.


2018 ◽  
Vol 30 (0) ◽  
Author(s):  
Josiane Souza Santos ◽  
Nadson Ressyé Simões ◽  
Sérgio Luiz Sonoda

Abstract Aim: The objective of this study was to investigate the spatial and temporal variation of microcrustacean assemblages of a reservoir in the Brazilian semiarid region. Methods Physical and chemical water variables and samples of microcrustaceans were collected at eight sites of the reservoir between July 2013 and November 2014, in a total of seven campaigns. For this study, the reservoir was categorized in two compartments: lateral and central. Results Limnological variables showed significant temporal variation (PERMANOVA, Pseudo-F = 19.51, p = 0.001). Higher turbidity values and suspended solids were observed in the rainiest months, while during the dry months, we measured higher values of transparency, dissolved oxygen, and chlorophyll-a. It was not found significant spatial variation of limnological variables (PERMANOVA, Pseudo-F = 0.96; p = 0.394). During the study period, ten species were recorded: four Cladocera (Ceriodaphnia cornuta, Daphnia gessneri, Diaphanosoma birgei and Diaphanosoma spinulosum ) three Copepoda Calanoida (Argyrodiaptomus azevedoi, Notodiaptomus cearensis and Notodiaptomus iheringi) and three Copepoda Cyclopoida (Macrocyclops albidus, Thermocyclops minutus and Thermocyclops decipiens). The microcrustacean assemblages showed significant temporal variation (PERMANOVA, Pseudo-F = 4.34; p = 0.001) as well as significant spatial variation (PERMANOVA, Pseudo-F = 9.46; p = 0.001). The highest values of abundance and richness were observed in the lateral compartment, this result is mainly related to the presence of aquatic macrophytes in this region, because the analysis of partial RDA indicated that limnological variables explained only 11% of this variation (Pseudo-F = 2.08, p = 0.001). Conclusions The results suggest that the seasonality of the semiarid is an important factor in the temporal dynamics of the limnological variables, while the aquatic macrophytes play an important role in the spatial distribution of the microcrustacean assembly.


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