scholarly journals SEREEGA: Simulating Event-Related EEG Activity

2018 ◽  
Author(s):  
Laurens R. Krol ◽  
Juliane Pawlitzki ◽  
Fabien Lotte ◽  
Klaus Gramann ◽  
Thorsten O. Zander
Keyword(s):  
Open Source ◽  
Brain Activity ◽  
Simulated Data ◽  
Ground Truth ◽  
List Type ◽  
Eeg Activity ◽  
Eeg Data ◽  
Different Types ◽  
Related Potentials ◽  
Eeg Recordings

AbstractElectroencephalography (EEG) is a popular method to monitor brain activity, but it can be difficult to evaluate EEG-based analysis methods because no ground-truth brain activity is available for comparison. Therefore, in order to test and evaluate such methods, researchers often use simulated EEG data instead of actual EEG recordings, ensuring that it is known beforehand which e ects are present in the data. As such, simulated data can be used, among other things, to assess or compare signal processing and machine learn-ing algorithms, to model EEG variabilities, and to design source reconstruction methods. In this paper, we present SEREEGA, short for Simulating Event-Related EEG Activity. SEREEGA is a MATLAB-based open-source toolbox dedicated to the generation of sim-ulated epochs of EEG data. It is modular and extensible, at initial release supporting ve different publicly available head models and capable of simulating multiple different types of signals mimicking brain activity. This paper presents the architecture and general work ow of this toolbox, as well as a simulated data set demonstrating some of its functions.HighlightsSimulated EEG data has a known ground truth, which can be used to validate methods.We present a general-purpose open-source toolbox to simulate EEG data.It provides a single framework to simulate many different types of EEG recordings.It is modular, extensible, and already includes a number of head models and signals.It supports noise, oscillations, event-related potentials, connectivity, and more.

scholarly journals SEED-G: Simulated EEG Data Generator for Testing Connectivity Algorithms

Sensors ◽  
2021 ◽  
Vol 21 (11) ◽  
pp. 3632
Author(s):  
Alessandra Anzolin ◽  
Jlenia Toppi ◽  
Manuela Petti ◽  
Febo Cincotti ◽  
Laura Astolfi
Keyword(s):  
Time Series ◽  
Brain Activity ◽  
Simulated Data ◽  
Ground Truth ◽  
Real Data ◽  
Connectivity Pattern ◽  
Data Simulation ◽  
Eeg Data ◽  
Data Generator ◽  
Wide Range

EEG signals are widely used to estimate brain circuits associated with specific tasks and cognitive processes. The testing of connectivity estimators is still an open issue because of the lack of a ground-truth in real data. Existing solutions such as the generation of simulated data based on a manually imposed connectivity pattern or mass oscillators can model only a few real cases with limited number of signals and spectral properties that do not reflect those of real brain activity. Furthermore, the generation of time series reproducing non-ideal and non-stationary ground-truth models is still missing. In this work, we present the SEED-G toolbox for the generation of pseudo-EEG data with imposed connectivity patterns, overcoming the existing limitations and enabling control of several parameters for data simulation according to the user’s needs. We first described the toolbox including guidelines for its correct use and then we tested its performances showing how, in a wide range of conditions, datasets composed by up to 60 time series were successfully generated in less than 5 s and with spectral features similar to real data. Then, SEED-G is employed for studying the effect of inter-trial variability Partial Directed Coherence (PDC) estimates, confirming its robustness.

scholarly journals Signal-space projection suppresses the tACS artifact in EEG recordings

2019 ◽  
Author(s):  
Johannes Vosskuhl ◽  
Tuomas P. Mutanen ◽  
Toralf Neuling ◽  
Risto J. Ilmoniemi ◽  
Christoph S. Herrmann
Keyword(s):  
Brain Activity ◽  
Current Source ◽  
Oscillatory Activity ◽  
Signal Space ◽  
Artifact Correction ◽  
Eeg Data ◽  
Before And After ◽  
Transcranial Alternating Current Stimulation ◽  
Space Projection ◽  
Eeg Recordings

1.AbstractBackgroundTo probe the functional role of brain oscillations, transcranial alternating current stimulation (tACS) has proven to be a useful neuroscientific tool. Because of the huge tACS-caused artifact in electroencephalography (EEG) signals, tACS–EEG studies have been mostly limited to compare brain activity between recordings before and after concurrent tACS. Critically, attempts to suppress the artifact in the data cannot assure that the entire artifact is removed while brain activity is preserved. The current study aims to evaluate the feasibility of specific artifact correction techniques to clean tACS-contaminated EEG data.New MethodIn the first experiment, we used a phantom head to have full control over the signal to be analyzed. Driving pre-recorded human brain-oscillation signals through a dipolar current source within the phantom, we simultaneously applied tACS and compared the performance of different artifact-correction techniques: sine subtraction, template subtraction, and signal-space projection (SSP). In the second experiment, we combined tACS and EEG on a human subject to validate the best-performing data-correction approach.ResultsThe tACS artifact was highly attenuated by SSP in the phantom and the human EEG; thus, we were able to recover the amplitude and phase of the oscillatory activity. In the human experiment, event-related desynchronization could be restored after correcting the artifact.Comparison with existing methodsThe best results were achieved with SSP, which outperformed sine subtraction and template subtraction.ConclusionsOur results demonstrate the feasibility of SSP by applying it to human tACS–EEG data.

Electroencephalography: Adult, Normal, and Benign Variants

2009 ◽  
pp. 119-136 ◽  
Author(s):  
Barbara F. Westmoreland
Keyword(s):  
Visual Analysis ◽  
Eeg Activity ◽  
Eeg Data ◽  
Different Types ◽  
Different Ages ◽  
Clinical Eeg ◽  
Normal Variability

In conclusion, this chapter provides an overview of the different types of normal EEG activity and benign variants that are seen in the EEG. One needs to be aware of the normal variability at different ages and different states of wakefulness, drowsiness, and sleep. Dr. Klass has stated that the “detection and interpretation of the EEG data derived from visual analysis involve matters of judgment and experience, which render clinical EEG an art as much as a science.”5

scholarly journals Delta/theta band EEG differentially tracks low and high frequency speech-derived envelopes

2020 ◽  
Author(s):  
Felix Bröhl ◽  
Christoph Kayser
Keyword(s):  
High Frequency ◽  
Brain Activity ◽  
Low Frequency ◽  
List Type ◽  
Theta Band ◽  
Acoustic Fluctuations ◽  
Eeg Recordings ◽  
Band Limited ◽  
Speech Envelope ◽  
Speech Tracking

AbstractThe representation of speech in the brain is often examined by measuring the alignment of rhythmic brain activity to the speech envelope. To conveniently quantify this alignment (termed ‘speech tracking’) many studies consider the overall speech envelope, which combines acoustic fluctuations across the spectral range. Using EEG recordings, we show that using this overall envelope can provide a distorted picture on speech encoding. We systematically investigated the encoding of spectrally-limited speech-derived envelopes presented by individual and multiple noise carriers in the human brain. Tracking in the 1 to 6 Hz EEG bands differentially reflected low (0.2 – 0.83 kHz) and high (2.66 – 8 kHz) frequency speech-derived envelopes. This was independent of the specific carrier frequency but sensitive to attentional manipulations, and reflects the context-dependent emphasis of information from distinct spectral ranges of the speech envelope in low frequency brain activity. As low and high frequency speech envelopes relate to distinct phonemic features, our results suggest that functionally distinct processes contribute to speech tracking in the same EEG bands, and are easily confounded when considering the overall speech envelope.HighlightsDelta/theta band EEG tracks band-limited speech-derived envelopes similar to real speechLow and high frequency speech-derived envelopes are represented differentiallyHigh-frequency derived envelopes are more susceptible to attentional and contextual manipulationsDelta band tracking shifts towards low frequency derived envelopes with more acoustic detail

scholarly journals Electroencephalogram (EEG) Recording Protocol for Cognitive and Affective Human Neuroscience Research

2019 ◽  
Author(s):  
Jaclyn L. Farrens ◽  
Aaron M. Simmons ◽  
Steven J. Luck ◽  
Emily S. Kappenman
Keyword(s):  
Human Brain ◽  
Brain Activity ◽  
High Temporal Resolution ◽  
Neuroscience Research ◽  
Eeg Data ◽  
Eeg Recordings ◽  
Brain Processing ◽  
Resolution Measure ◽  
Electroencephalogram Eeg

Abstract Electroencephalography (EEG) is one of the most widely used techniques to measure human brain activity. EEG recordings provide a direct, high temporal resolution measure of cortical activity from noninvasive scalp electrodes. However, the signals are small relative to the noise, and optimizing the quality of the recorded EEG data can significantly improve the ability to identify signatures of brain processing. This protocol provides a step-by-step guide to recording the EEG from human research participants using strategies optimized for producing the best quality EEG.

scholarly journals Electroencephalogram (EEG) Recording Protocol for Cognitive and Affective Human Neuroscience Research

2020 ◽  
Author(s):  
Jaclyn L. Farrens ◽  
Aaron M. Simmons ◽  
Steven J. Luck ◽  
Emily S. Kappenman
Keyword(s):  
Human Brain ◽  
Brain Activity ◽  
High Temporal Resolution ◽  
Neuroscience Research ◽  
Eeg Data ◽  
Eeg Recordings ◽  
Brain Processing ◽  
Resolution Measure ◽  
Electroencephalogram Eeg

Abstract Electroencephalography (EEG) is one of the most widely used techniques to measure human brain activity. EEG recordings provide a direct, high temporal resolution measure of cortical activity from noninvasive scalp electrodes. However, the signals are small relative to the noise, and optimizing the quality of the recorded EEG data can significantly improve the ability to identify signatures of brain processing. This protocol provides a step-by-step guide to recording the EEG from human research participants using strategies optimized for producing the best quality EEG.

scholarly journals Decode Brain System: A Dynamic Adaptive Convolutional Quorum Voting Approach for Variable-Length EEG Data

Complexity ◽  
2020 ◽  
Vol 2020 ◽  
pp. 1-9
Author(s):  
Tao Xu ◽  
Yun Zhou ◽  
Zekai Hou ◽  
Wenlan Zhang
Keyword(s):  
Time Window ◽  
Brain Activity ◽  
Sliding Window ◽  
Variable Length ◽  
Cognitive State ◽  
Human Beings ◽  
Processing Variable ◽  
Cognitive States ◽  
Eeg Data ◽  
Eeg Recordings

The brain is a complex and dynamic system, consisting of interacting sets and the temporal evolution of these sets. Electroencephalogram (EEG) recordings of brain activity play a vital role to decode the cognitive process of human beings in learning research and application areas. In the real world, people react to stimuli differently, and the duration of brain activities varies between individuals. Therefore, the length of EEG recordings in trials gathered in the experiment is variable. However, current approaches either fix the length of EEG recordings in each trial which would lose information hidden in the data or use the sliding window which would consume large computation on overlapped parts of slices. In this paper, we propose TOO (Traverse Only Once), a new approach for processing variable-length EEG trial data. TOO is a convolutional quorum voting approach that breaks the fixed structure of the model through convolutional implementation of sliding windows and the replacement of the fully connected layer by the 1 × 1 convolutional layer. Each output cell generated from 1 × 1 convolutional layer corresponds to each slice created by a sliding time window, which reflects changes in cognitive states. Then, TOO employs quorum voting on output cells and determines the cognitive state representing the entire single trial. Our approach provides an adaptive model for trials of different lengths with traversing EEG data of each trial only once to recognize cognitive states. We design and implement a cognitive experiment and obtain EEG data. Using the data collecting from this experiment, we conducted an evaluation to compare TOO with a state-of-art sliding window end-to-end approach. The results show that TOO yields a good accuracy (83.58%) at the trial level with a much lower computation (11.16%). It also has the potential to be used in variable signal processing in other application areas.

scholarly journals Signal-Space Projection Suppresses the tACS Artifact in EEG Recordings

2020 ◽  
Vol 14 ◽  
Author(s):  
Johannes Vosskuhl ◽  
Tuomas P. Mutanen ◽  
Toralf Neuling ◽  
Risto J. Ilmoniemi ◽  
Christoph S. Herrmann
Keyword(s):  
Brain Activity ◽  
Current Source ◽  
Oscillatory Activity ◽  
Signal Space ◽  
Artifact Correction ◽  
Eeg Data ◽  
Before And After ◽  
Transcranial Alternating Current Stimulation ◽  
Space Projection ◽  
Eeg Recordings

BackgroundTo probe the functional role of brain oscillations, transcranial alternating current stimulation (tACS) has proven to be a useful neuroscientific tool. Because of the excessive tACS-caused artifact at the stimulation frequency in electroencephalography (EEG) signals, tACS + EEG studies have been mostly limited to compare brain activity between recordings before and after concurrent tACS. Critically, attempts to suppress the artifact in the data cannot assure that the entire artifact is removed while brain activity is preserved. The current study aims to evaluate the feasibility of specific artifact correction techniques to clean tACS-contaminated EEG data.New MethodIn the first experiment, we used a phantom head to have full control over the signal to be analyzed. Driving pre-recorded human brain-oscillation signals through a dipolar current source within the phantom, we simultaneously applied tACS and compared the performance of different artifact-correction techniques: sine subtraction, template subtraction, and signal-space projection (SSP). In the second experiment, we combined tACS and EEG on one human subject to demonstrate the best-performing data-correction approach in a proof of principle.ResultsThe tACS artifact was highly attenuated by SSP in the phantom and the human EEG; thus, we were able to recover the amplitude and phase of the oscillatory activity. In the human experiment, event-related desynchronization could be restored after correcting the artifact.Comparison With Existing MethodsThe best results were achieved with SSP, which outperformed sine subtraction and template subtraction.ConclusionOur results demonstrate the feasibility of SSP by applying it to a phantom measurement with pre-recorded signal and one human tACS + EEG dataset. For a full validation of SSP, more data are needed.

scholarly journals Time-frequency analysis methods and their application in developmental EEG data

2021 ◽  
Author(s):  
Santiago Morales ◽  
Maureen Bowers
Keyword(s):  
Brain Activity ◽  
Event Related Potentials ◽  
Phase Lag ◽  
Phase Synchrony ◽  
Time Frequency ◽  
Use Of Time ◽  
Eeg Data ◽  
Related Potentials ◽  
Neurophysiological Mechanisms ◽  
The Fourier Transform

EEG provides a rich measure of brain activity that can be characterized as neuronal oscillations. However, most developmental EEG work to date has focused on analyzing EEG data as Event-Related Potentials (ERPs) or power based on the Fourier transform. While these measures have been productive, they do not leverage all the information contained within the EEG signal. Namely, ERP analyses ignore non-phase-locked signals and Fourier-based power analyses ignore temporal information. Time-frequency analyses can better characterize the oscillations contained in the EEG data. By separating power and phase information across different frequencies, time-frequency measures provide a closer interpretation of the neurophysiological mechanisms, facilitate translation across neurophysiology disciplines, and capture processes not observed by ERP or Fourier-based analyses (e.g., connectivity). Despite their unique contributions, a literature review of this journal reveals that time-frequency analyses of EEG are yet to be embraced by the developmental cognitive neuroscience field. This manuscript presents a conceptual introduction to time-frequency analyses for developmental researchers. To facilitate the use of time-frequency analyses, we include a tutorial of accessible scripts, based on Cohen (2014), to calculate time-frequency power (signal strength), inter-trial phase synchrony (signal consistency), and two types of phase-based connectivity (inter-channel phase synchrony and weighted phase lag index).

Spontaneous EEG Oscillations in Children, Adolescents, and Adults

2009 ◽  
Vol 23 (4) ◽  
pp. 157-173 ◽  
Author(s):  
Robert J. Barry ◽  
Adam R. Clarke
Keyword(s):  
Brain Activity ◽  
Event Related Potentials ◽  
Conduct Disorders ◽  
Eeg Activity ◽  
Hyperactivity Disorder ◽  
Eyes Closed ◽  
Adolescents And Adults ◽  
Eyes Open ◽  
Related Potentials ◽  
Oscillatory Brain Activity

Data are presented on EEG activity in typically developing controls, focusing on the traditional delta, theta, alpha, and beta bands through childhood, with some extensions into adolescence and adults. Both eyes-closed and eyes-open resting state data are discussed. These reflections of typical development provide a framework for illustrating EEG differences in people with attention deficit/hyperactivity disorder (AD/HD), and its main diagnostic types, from children to adults. Comorbidity effects in the EEG of children with AD/HD, particularly comorbid reading disabilities and conduct disorders, are also described. Some recent explorations of the links between arousal/activation and EEG activity may contribute to our understanding of the functional nature of brain oscillations in this context. Other aspects of oscillatory brain activity, coherence and event-related potentials, are also briefly discussed within this framework.

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