scholarly journals Automated Electrodes Detection during simultaneous EEG/fMRI

2018 ◽  
Author(s):  
Mathis Fleury ◽  
Christian Barillot ◽  
Marsel Mano ◽  
Elise Bannier ◽  
Pierre Maurel
Keyword(s):  
Magnetic Resonance ◽  
Brain Activity ◽  
Detection Accuracy ◽  
Source Reconstruction ◽  
Mr Images ◽  
Automated Method ◽  
Accurate Knowledge ◽  
Fully Automatic ◽  
Short Echo Time ◽  
Average Position

1AbstractThe coupling of Electroencephalography (EEG) and functional magnetic resonance imaging (fMRI) enables the measure of brain activity at high spatial and temporal resolution. The localisation of EEG sources depends on several parameters including the knowledge of the position of the electrodes on the scalp. An accurate knowledge about this information is important for source reconstruction. Currently, when acquiring EEG and fMRI together, the position of the electrodes is generally estimated according to fiducial points by using a template. In the context of simultaneous EEG/fMRI acquisition, a natural idea is to use magnetic resonance (MR) images to localise EEG electrodes. However, most MR compatible electrodes are built to be almost invisible on MR Images. Taking advantage of a recently proposed Ultra short Echo Time (UTE) sequence, we introduce a fully automatic method to detect and label those electrodes in MR images. Our method was tested on 8 subjects wearing a 64-channel EEG cap. This automated method showed an average detection accuracy of 94% and the average position error was 3.1 mm. These results suggest that the proposed method has potential for determining the position of the electrodes during simultaneous EEG/fMRI acquisition with a very light cost procedure.

scholarly journals Automated Head Tissue Modelling Based on Structural Magnetic Resonance Images for Electroencephalographic Source Reconstruction

2021 ◽  
Author(s):  
Gaia Amaranta Taberna ◽  
Jessica Samogin ◽  
Dante Mantini
Keyword(s):  
Magnetic Resonance ◽  
Brain Structures ◽  
Magnetic Resonance Images ◽  
Head Model ◽  
Source Reconstruction ◽  
Mr Images ◽  
Tissue Segmentation ◽  
Mr Image ◽  
Eeg Recordings ◽  
Tissue Modelling

AbstractIn the last years, technological advancements for the analysis of electroencephalography (EEG) recordings have permitted to investigate neural activity and connectivity in the human brain with unprecedented precision and reliability. A crucial element for accurate EEG source reconstruction is the construction of a realistic head model, incorporating information on electrode positions and head tissue distribution. In this paper, we introduce MR-TIM, a toolbox for head tissue modelling from structural magnetic resonance (MR) images. The toolbox consists of three modules: 1) image pre-processing – the raw MR image is denoised and prepared for further analyses; 2) tissue probability mapping – template tissue probability maps (TPMs) in individual space are generated from the MR image; 3) tissue segmentation – information from all the TPMs is integrated such that each voxel in the MR image is assigned to a specific tissue. MR-TIM generates highly realistic 3D masks, five of which are associated with brain structures (brain and cerebellar grey matter, brain and cerebellar white matter, and brainstem) and the remaining seven with other head tissues (cerebrospinal fluid, spongy and compact bones, eyes, muscle, fat and skin). Our validation, conducted on MR images collected in healthy volunteers and patients as well as an MR template image from an open-source repository, demonstrates that MR-TIM is more accurate than alternative approaches for whole-head tissue segmentation. We hope that MR-TIM, by yielding an increased precision in head modelling, will contribute to a more widespread use of EEG as a brain imaging technique.

scholarly journals Deep Learning-Based Localization of EEG Electrodes Within MRI Acquisitions

2021 ◽  
Vol 12 ◽  
Author(s):  
Caroline Pinte ◽  
Mathis Fleury ◽  
Pierre Maurel
Keyword(s):  
Neural Network ◽  
Spatial Information ◽  
Brain Activity ◽  
Relevant Information ◽  
Magnetic Resonance Images ◽  
Detection Accuracy ◽  
Simultaneous Acquisition ◽  
The Neural Network ◽  
Mri Sequences ◽  
Short Echo Time

The simultaneous acquisition of electroencephalographic (EEG) signals and functional magnetic resonance images (fMRI) aims to measure brain activity with good spatial and temporal resolution. This bimodal neuroimaging can bring complementary and very relevant information in many cases and in particular for epilepsy. Indeed, it has been shown that it can facilitate the localization of epileptic networks. Regarding the EEG, source localization requires the resolution of a complex inverse problem that depends on several parameters, one of the most important of which is the position of the EEG electrodes on the scalp. These positions are often roughly estimated using fiducial points. In simultaneous EEG-fMRI acquisitions, specific MRI sequences can provide valuable spatial information. In this work, we propose a new fully automatic method based on neural networks to segment an ultra-short echo-time MR volume in order to retrieve the coordinates and labels of the EEG electrodes. It consists of two steps: a segmentation of the images by a neural network, followed by the registration of an EEG template on the obtained detections. We trained the neural network using 37 MR volumes and then we tested our method on 23 new volumes. The results show an average detection accuracy of 99.7% with an average position error of 2.24 mm, as well as 100% accuracy in the labeling.

scholarly journals Enhanced Magnetic Resonance Image Synthesis with Contrast-Aware Generative Adversarial Networks

2021 ◽  
Vol 7 (8) ◽  
pp. 133
Author(s):  
Jonas Denck ◽  
Jens Guehring ◽  
Andreas Maier ◽  
Eva Rothgang
Keyword(s):  
Magnetic Resonance ◽  
Image Synthesis ◽  
Generative Adversarial Networks ◽  
Data Generation ◽  
Mr Images ◽  
Generative Adversarial Network ◽  
Radiology Training ◽  
Repetition Time ◽  
Echo Time ◽  
Image Orientation

A magnetic resonance imaging (MRI) exam typically consists of the acquisition of multiple MR pulse sequences, which are required for a reliable diagnosis. With the rise of generative deep learning models, approaches for the synthesis of MR images are developed to either synthesize additional MR contrasts, generate synthetic data, or augment existing data for AI training. While current generative approaches allow only the synthesis of specific sets of MR contrasts, we developed a method to generate synthetic MR images with adjustable image contrast. Therefore, we trained a generative adversarial network (GAN) with a separate auxiliary classifier (AC) network to generate synthetic MR knee images conditioned on various acquisition parameters (repetition time, echo time, and image orientation). The AC determined the repetition time with a mean absolute error (MAE) of 239.6 ms, the echo time with an MAE of 1.6 ms, and the image orientation with an accuracy of 100%. Therefore, it can properly condition the generator network during training. Moreover, in a visual Turing test, two experts mislabeled 40.5% of real and synthetic MR images, demonstrating that the image quality of the generated synthetic and real MR images is comparable. This work can support radiologists and technologists during the parameterization of MR sequences by previewing the yielded MR contrast, can serve as a valuable tool for radiology training, and can be used for customized data generation to support AI training.

Internal quality evaluation of chestnut using nuclear magnetic resonance

2020 ◽  
Vol 0 (0) ◽  
Author(s):  
Soo Hyun Park ◽  
Sang Ha Noh ◽  
Michael J. McCarthy ◽  
Seong Min Kim
Keyword(s):  
Image Processing ◽  
Nuclear Magnetic Resonance ◽  
Magnetic Resonance ◽  
Processing Algorithm ◽  
Internal Quality ◽  
Soluble Solid Content ◽  
Mr Images ◽  
Image Processing Algorithm ◽  
Internal Defects ◽  
Nuclear Magnetic

AbstractThis study was carried out to develop a prediction model for soluble solid content (SSC) of intact chestnut and to detect internal defects using nuclear magnetic resonance (NMR) relaxometry and magnetic resonance imaging (MRI). Inversion recovery and Carr–Purcell–Meiboom–Gill (CPMG) pulse sequences used to determine the longitudinal (T1) and transverse (T2) relaxation times, respectively. Partial least squares regression (PLSR) was adopted to predict SSCs of chestnuts with NMR data and histograms from MR images. The coefficient of determination (R2), root mean square error of prediction (RMSEP), ratio of prediction to deviation (RPD), and the ratio of error range (RER) of the optimized model to predict SSC were 0.77, 1.41 °Brix, 1.86, and 11.31 with a validation set. Furthermore, an image-processing algorithm has been developed to detect internal defects such as decay, mold, and cavity using MR images. The classification applied with the developed image processing algorithm was over 94% accurate to classify. Based on the results obtained, it was determined that the NMR signal could be applied for grading several levels by SSC, and MRI could be used to evaluate the internal qualities of chestnuts.

scholarly journals Multigrid Nonlocal Gaussian Mixture Model for Segmentation of Brain Tissues in Magnetic Resonance Images

2016 ◽  
Vol 2016 ◽  
pp. 1-10
Author(s):  
Yunjie Chen ◽  
Tianming Zhan ◽  
Ji Zhang ◽  
Hongyuan Wang
Keyword(s):  
Magnetic Resonance ◽  
Gaussian Mixture Model ◽  
Mixture Model ◽  
Gaussian Mixture ◽  
Magnetic Resonance Images ◽  
Intensity Inhomogeneity ◽  
Mr Images ◽  
Proposed Model ◽  
Brain Mr Images ◽  
The Impact

We propose a novel segmentation method based on regional and nonlocal information to overcome the impact of image intensity inhomogeneities and noise in human brain magnetic resonance images. With the consideration of the spatial distribution of different tissues in brain images, our method does not need preestimation or precorrection procedures for intensity inhomogeneities and noise. A nonlocal information based Gaussian mixture model (NGMM) is proposed to reduce the effect of noise. To reduce the effect of intensity inhomogeneity, the multigrid nonlocal Gaussian mixture model (MNGMM) is proposed to segment brain MR images in each nonoverlapping multigrid generated by using a new multigrid generation method. Therefore the proposed model can simultaneously overcome the impact of noise and intensity inhomogeneity and automatically classify 2D and 3D MR data into tissues of white matter, gray matter, and cerebral spinal fluid. To maintain the statistical reliability and spatial continuity of the segmentation, a fusion strategy is adopted to integrate the clustering results from different grid. The experiments on synthetic and clinical brain MR images demonstrate the superior performance of the proposed model comparing with several state-of-the-art algorithms.

Magnetic resonance imaging of primary cerebral gliosarcoma: a report of 15 cases

2008 ◽  
Vol 49 (9) ◽  
pp. 1058-1067 ◽  
Author(s):  
L. Han ◽  
X. Zhang ◽  
S. Qiu ◽  
X. Li ◽  
W. Xiong ◽  
...  
Keyword(s):  
Magnetic Resonance ◽  
Clinical Information ◽  
Cerebellar Hemisphere ◽  
Imaging Features ◽  
Resonance Imaging ◽  
Mr Images ◽  
Peripheral Location ◽  
Pathology Reports ◽  
The Right ◽  
Radiologic Features

Background: Gliosarcomas are rare tumors with mixed glial and mesenchymal components. Many of their radiologic features resemble those of other primary brain malignancies. Purpose: To investigate the magnetic resonance (MR) imaging features of gliosarcomas. Material and Methods: We retrospectively reviewed the MR images, pathology reports, and clinical information of 11 male and four female patients aged 15–71 years to evaluate the location, morphology, enhancement, and other features of their pathologically confirmed gliosarcomas. Results: Apart from one tumor in the right cerebellar hemisphere, all were supratentorial. Two tumors were intraventricular, and four involved the corpus callosum. The tumors were well demarcated, with an inhomogeneous or cystic appearance and moderate-to-extensive surrounding edema. Thick walls with strong rim and ring-like enhancement were observed in 13 (87%). Seven (47%) showed intratumoral paliform enhancement. Conclusion: Gliosarcoma demonstrates certain characteristic MR features, such as supratentorial and peripheral location, well-demarcated, abutting a dural surface, uneven and thick-walled rim-like or ring enhancement, as well as intratumoral strip enhancement. These findings, combined with patient age, can aid the differential diagnosis of gliosarcomas from more common primary brain tumors.

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