scholarly journals Facultative social exploitation among Myxoccocus bacteria due to non-responsive local competition

2019 ◽  
Author(s):  
jeff smith ◽  
Gregory J. Velicer

AbstractMicrobes cooperate in many ways, but it is unclear to what extent they also have adaptations to detect and exploit unrelated social partners. Experimental data often cannot discriminate between social exploitation caused by complex adaptive traits and exploitation caused by simple deleterious mutations. Here we demonstrate facultative social exploitation among Myxococcus bacteria due to simple non-responsive local competition. We show that the time dynamics of developmental exploitation by a tan phase variant are consistent with a model where cells do not respond to the presence of other genotypes but simply compete for some shared resource necessary to produce spores. The model also predicts the frequency-dependent responses of strains to genetic chimerism in multicellular fruiting bodies. Interactions between naturally occuring soil isolates, on the other hand, are consistent with strong interference competition where the winner almost completely prevents the loser from producing any spores. These results show how facultative social exploitation does not require elaborate mechanisms to detect and respond to foreign genotypes but can instead be caused by simple competition acting on a local scale. Myxococcus cells, like social insects, cooperate in some ways while simultaneously competing in others.

2005 ◽  
Vol 56 ◽  
pp. 125-153
Author(s):  
Elliott Sober

‘There are known knowns; there are things we know we know. We also know there are known unknowns; that is to say we know there are some things we do not know. But there are also unknown unknowns—the ones we don't know we don't know.’


2010 ◽  
Vol 61 (8) ◽  
pp. 2185-2202 ◽  
Author(s):  
Graeme L. Hammer ◽  
Erik van Oosterom ◽  
Greg McLean ◽  
Scott C. Chapman ◽  
Ian Broad ◽  
...  

OENO One ◽  
2017 ◽  
Vol 51 (2) ◽  
pp. 181
Author(s):  
Philippe Vivin ◽  
Éric Lebon ◽  
ZhanWu Dai ◽  
Eric Duchêne ◽  
Elisa Marguerit ◽  
...  

<p class="Abstract" style="text-align: justify;">Designing genotypes with acceptable performance under warmer or drier environments is essential for sustainable crop production in view of climate change. However, this objective is not trivial for grapevine since traits targeted for genetic improvement are complex and result from many interactions and trade-off between various physiological and molecular processes that are controlled by many environmental conditions. Integrative tools can help to understand and unravel these Genotype × Environment interactions. Indeed, models integrating physiological processes and their genetic control have been shown to provide a relevant framework for analyzing genetic diversity of complex traits and enhancing progress in plant breeding for various environments. Here we provide an overview of the work conducted by the French LACCAVE research consortium on this topic. Modeling abiotic stress tolerance and fruit quality in grapevine is a challenging issue, but it will provide the first step to design and test <em>in silico</em> plants better adapted to future issues of viticulture.</p>


OENO One ◽  
2017 ◽  
Vol 51 (2) ◽  
pp. 181-189 ◽  
Author(s):  
Philippe Vivin ◽  
Éric Lebon ◽  
ZhanWu Dai ◽  
Eric Duchêne ◽  
Elisa Marguerit ◽  
...  

Designing genotypes with acceptable performance under warmer or drier environments is essential for sustainable crop production in view of climate change. However, this objective is not trivial for grapevine since traits targeted for genetic improvement are complex and result from many interactions and trade-off between various physiological and molecular processes that are controlled by many environmental conditions. Integrative tools can help to understand and unravel these Genotype × Environment interactions. Indeed, models integrating physiological processes and their genetic control have been shown to provide a relevant framework for analyzing genetic diversity of complex traits and enhancing progress in plant breeding for various environments. Here we provide an overview of the work conducted by the French LACCAVE research consortium on this topic. Modeling abiotic stress tolerance and fruit quality in grapevine is a challenging issue, but it will provide the first step to design and test in silico plants better adapted to future issues of viticulture.


2021 ◽  
Author(s):  
Emma Berdan ◽  
Claire Merot ◽  
Henrik Pavia ◽  
Kerstin Johannesson ◽  
Maren Wellenreuther ◽  
...  

Inversions often underlie complex adaptive traits, but the genic targets inside them are largely unknown. Gene expression profiling provides a powerful way to link inversions with their phenotypic consequences. We examined the effects of the Cf-Inv(1) inversion in the seaweed fly Coelopa frigida on gene expression variation across sexes and life stages. Our analyses revealed that Cf-Inv(1) shapes global expression patterns but the extent of this effect is variable with much stronger effects in adults than larvae. Furthermore, within adults, both common as well as sex specific patterns were found. The vast majority of these differentially expressed genes mapped to Cf-Inv(1). However, genes that were differentially expressed in a single context (i.e. in males, females or larvae) were more likely to be located outside of Cf-Inv(1). By combining our findings with genomic scans for environmentally associated SNPs, we were able to pinpoint candidate variants in the inversion that may underlie mechanistic pathways that determine phenotypes. Together the results in this study, combined with previous findings, support the notion that the polymorphic Cf-Inv(1) inversion in this species is a major factor shaping both coding and regulatory variation resulting in highly complex adaptive effects.


2005 ◽  
Vol 56 ◽  
pp. 10-11 ◽  
Author(s):  
Elliott Sober

‘There are known knowns; there are things we know we know. We also know there are known unknowns; that is to say we know there are some things we do not know. But there are also unknown unknowns—the ones we don’t know we don’t know.’ —Donald Rumsfeld, 2003, President George W. Bush’s Secretary of Defense, on the subject of the U.S. government’s failure to discover weapons of mass destruction in Iraq


2016 ◽  
pp. 147-162 ◽  
Author(s):  
Graeme Hammer ◽  
Charlie Messina ◽  
Erik van Oosterom ◽  
Scott Chapman ◽  
Vijaya Singh ◽  
...  

Sign in / Sign up

Export Citation Format

Share Document