scholarly journals Combining a multi-analyzer stage with a two-dimensional detector for high-resolution powder X-ray diffraction: correcting the angular scale

2021 ◽  
Vol 54 (4) ◽  
Author(s):  
Andrew Fitch ◽  
Catherine Dejoie

In a test experiment, a two-dimensional pixel detector was mounted on the nine-channel multi-analyzer stage of the high-resolution powder diffraction beamline ID22 at the ESRF. This detector replaces a bank of scintillation counters that detect the diffracted intensity passing via the analyzer crystals as the diffractometer arm is scanned. At each diffractometer detector arm angle 2Θ, a 2D image is recorded that displays nine distinct regions of interest corresponding to the diffraction signals transmitted by each of the analyzer crystals. Summing pixels from within each region of interest allows the diffracted intensity to be extracted for each channel. X-rays are diffracted from the sample at various angles, 2θ, into Debye–Scherrer cones. Depending on the azimuthal angle around the cone, diffracted photons satisfy the analyzer-crystal Bragg condition at different diffractometer 2Θ values and arrive on the detector at different horizontal (axial) positions. The more the azimuthal angle deviates from diffraction in the vertical plane, the lower the 2Θ angle at which it is transmitted by an analyzer crystal, and the greater the distance of the detecting pixel from the centerline of the detector. This paper illustrates how the axial resolution afforded by the pixel detector can be used to correct the apparent diffraction angle, 2Θ, given by the diffractometer arm to its true diffraction angle, 2θ. This allows a reduction in peak asymmetry at low angle, and even with a relatively small axial acceptance, the correction leads to narrower peaks than if no correction is applied. By varying axial acceptance with diffraction angle, it is possible to optimize angular resolution at low diffraction angles and counting statistics at high angles. In addition, there is an intrinsic peak broadening with increasing azimuthal angle, dependent on the axial beam and detector pixel sizes. This effect reduces with 2θ, as the curvature of the Debye–Scherrer cones decreases. This broadening can be estimated and used to help choose the axial range to include as a function of diffraction angle.

2014 ◽  
Vol 20 (S3) ◽  
pp. 652-653 ◽  
Author(s):  
H. Soltau ◽  
R. Hartmann ◽  
P. Holl ◽  
S. Ihle ◽  
H. Ryll ◽  
...  

2018 ◽  
Vol 51 (6) ◽  
pp. 1721-1733 ◽  
Author(s):  
Catherine Dejoie ◽  
Mauro Coduri ◽  
Sébastien Petitdemange ◽  
Carlotta Giacobbe ◽  
Ezio Covacci ◽  
...  

The high-resolution powder diffraction beamline at ESRF (ID22), built with a dual-undulator source on the 6 GeV storage ring, combines a wide continuous range of incident energy (6–80 keV) with high brightness, offering the possibility to carry out high-flux high-resolution powder diffraction measurements. In routine operation, a bank of nine scintillation detectors is scanned vertically to measure the diffracted intensity versus 2θ, each detector being preceded by an Si 111 analyser crystal. Although the current detector system has operated successfully for the past 20 years, recent developments in detector technology could be exploited to improve the overall performance. With this in mind, as a test, a two-dimensional Pilatus3 X CdTe 300 K-W pixel detector has been mounted on the arm of the diffractometer, replacing the nine scintillator detectors. At each nominal 2θ value, a two-dimensional image is recorded showing nine distinct regions corresponding to the diffraction signals passing via each of the analyser crystals. This arrangement offers new flexibility in terms of data handling and processing, with the possibility to optimize both peak shape and statistics, to remove parasitic effects, and to gain spatial resolution information. Combining the high efficiency of a hybrid photon-counting area detector with the high angular resolution given by analyser crystals is an effective approach to improving the overall performance of high-resolution powder diffraction.


2020 ◽  
Vol 27 (1) ◽  
pp. 31-36 ◽  
Author(s):  
Aleksandr Kalinko ◽  
Wolfgang A. Caliebe ◽  
Roland Schoch ◽  
Matthias Bauer

The design and performance of the high-resolution wavelength-dispersive multi-crystal von Hamos-type spectrometer at PETRA III beamline P64 are described. Extended analyzer crystal collection available at the beamline allows coverage of a broad energy range from 5 keV to 20 keV with an energy resolution of 0.35–1 eV. Particular attention was paid to enabling two-color measurements by a combination of two types of analyzer crystals and two two-dimensional detectors. The performance of the spectrometer is demonstrated by elastic-line and emission-line measurements on various compounds.


2006 ◽  
Vol 39 (5) ◽  
pp. 661-670 ◽  
Author(s):  
Yves Méheust ◽  
Kenneth Dahl Knudsen ◽  
Jon Otto Fossum

The wide-angle scattering of X-rays (WAXS) by anisotropic powders of nano-layered crystallites (nano-stacks) is addressed. Assuming that the orientation distribution probability functionfof the nano-stacks only depends on the deviation of the crystallites' orientation from a fixed reference direction, a relation providingffrom the dependence of a given diffraction peak's amplitude on the azimuthal angle is derived. The method is applied to two systems of sodium fluorohectorite (NaFH) clay particles, using synchrotron radiation and a WAXS setup with a two-dimensional detector. In the first system, which consists of dry-pressed NaFH samples, the orientation distribution probability function corresponds to a classical uniaxial nematic order. The second system is observed in bundles of polarized NaFH particles in silicon oil; in this case, the nano-stacks have their directors, on average, in a plane normal to the reference direction, andfis a function of the angle between a nano-stack's director and that of the plane. In both cases, a suitable Maier–Saupe function is obtained for the distributions, and the reference direction is determined with respect to the laboratory frame. The method only requires one scattering image. Consistency can be checked by determining the orientation distribution from several diffraction peaks independently.


Author(s):  
H.A. Cohen ◽  
T.W. Jeng ◽  
W. Chiu

This tutorial will discuss the methodology of low dose electron diffraction and imaging of crystalline biological objects, the problems of data interpretation for two-dimensional projected density maps of glucose embedded protein crystals, the factors to be considered in combining tilt data from three-dimensional crystals, and finally, the prospects of achieving a high resolution three-dimensional density map of a biological crystal. This methodology will be illustrated using two proteins under investigation in our laboratory, the T4 DNA helix destabilizing protein gp32*I and the crotoxin complex crystal.


Author(s):  
K. H. Downing ◽  
S. G. Wolf ◽  
E. Nogales

Microtubules are involved in a host of critical cell activities, many of which involve transport of organelles through the cell. Different sets of microtubules appear to form during the cell cycle for different functions. Knowledge of the structure of tubulin will be necessary in order to understand the various functional mechanisms of microtubule assemble, disassembly, and interaction with other molecules, but tubulin has so far resisted crystallization for x-ray diffraction studies. Fortuitously, in the presence of zinc ions, tubulin also forms two-dimensional, crystalline sheets that are ideally suited for study by electron microscopy. We have refined procedures for forming the sheets and preparing them for EM, and have been able to obtain high-resolution structural data that sheds light on the formation and stabilization of microtubules, and even the interaction with a therapeutic drug.Tubulin sheets had been extensively studied in negative stain, demonstrating that the same protofilament structure was formed in the sheets and microtubules. For high resolution studies, we have found that the sheets embedded in either glucose or tannin diffract to around 3 Å.


Author(s):  
O.L. Krivanek ◽  
M.L. Leber

Three-fold astigmatism resembles regular astigmatism, but it has 3-fold rather than 2-fold symmetry. Its contribution to the aberration function χ(q) can be written as:where A3 is the coefficient of 3-fold astigmatism, λ is the electron wavelength, q is the spatial frequency, ϕ the azimuthal angle (ϕ = tan-1 (qy/qx)), and ϕ3 the direction of the astigmatism.Three-fold astigmatism is responsible for the “star of Mercedes” aberration figure that one obtains from intermediate lenses once their two-fold astigmatism has been corrected. Its effects have been observed when the beam is tilted in a hollow cone over a wide range of angles, and there is evidence for it in high resolution images of a small probe obtained in a field emission gun TEM/STEM instrument. It was also expected to be a major aberration in sextupole-based Cs correctors, and ways were being developed for dealing with it on Cs-corrected STEMs.


2001 ◽  
Vol 120 (5) ◽  
pp. A226-A226 ◽  
Author(s):  
W LAMMERS ◽  
S DHANASEKARAN ◽  
J SLACK ◽  
B STEPHEN

2004 ◽  
Vol 43 (06) ◽  
pp. 185-189 ◽  
Author(s):  
J. T. Kuikka

Summary Aim: Serotonin transporter (SERT) imaging can be used to study the role of regional abnormalities of neurotransmitter release in various mental disorders and to study the mechanism of action of therapeutic drugs or drugs’ abuse. We examine the quantitative accuracy and reproducibility that can be achieved with high-resolution SPECT of serotonergic neurotransmission. Method: Binding potential (BP) of 123I labeled tracer specific for midbrain SERT was assessed in 20 healthy persons. The effects of scatter, attenuation, partial volume, mis-registration and statistical noise were estimated using phantom and human studies. Results: Without any correction, BP was underestimated by 73%. The partial volume error was the major component in this underestimation whereas the most critical error for the reproducibility was misplacement of region of interest (ROI). Conclusion: The proper ROI registration, the use of the multiple head gamma camera with transmission based scatter correction introduce more relevant results. However, due to the small dimensions of the midbrain SERT structures and poor spatial resolution of SPECT, the improvement without the partial volume correction is not great enough to restore the estimate of BP to that of the true one.


1985 ◽  
Vol 54 (03) ◽  
pp. 626-629 ◽  
Author(s):  
M Meyer ◽  
F H Herrmann

SummaryThe platelet proteins of 9 thrombasthenic patients from 7 families were analysed by high resolution two-dimensional gel electrophoresis (HR-2DE) and crossed immunoelectrophoresis (CIE). In 7 patients both glycoproteins (GPs) IIb and Ilia were absent or reduced to roughly the same extent. In two related patients only a trace of GP Ilb-IIIa complex was detected in CIE, but HR-2DE revealed a glycopeptide in the position of GP Ilia in an amount comparable to type II thrombasthenia. This GP Ilia-like component was neither recognized normally by anti-GP Ilb-IIIa antibodies nor labeled by surface iodination. In unreduced-reduced two-dimensional gel electrophoresis two components were observed in the region of GP Ilia. The assumption of a structural variant of GP Ilia in the two related patients is discussed.


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