Employee performance indicates the result of work from employee in conducting the job based on competence, manner, and motivation. In evaluating employee performance, there are many factors, including loyalty, responsibility, discipline, integrity, team work, and leadership factors. Employee roles in advancing the organization is needed because without a good performance, the organization cannot achieve its objectives well. In AMIK PakartiLuhurTangerang, employee performance evaluationis done subjectively from the result of meeting, hence, the result of evaluation is not accurate. The samples is done by purposive sampling technique, which is the questionnaire is given to respondents. Employee Performance Evaluation Model is made with Adaptive Neuro Fuzzy Inference System (ANFIS) Sugeno method and Toolbox Matlab 8.2 R2013b.To ensure that the system meet the minimum standard quality, thus, the system use Software Quality Assurance (SQA) in evaluating software quality.The conclusion from employee performance evaluation model has a good level of accuracy.