Improving Rare-Class Recognition of Marine Plankton with Hard Negative Mining

Author(s):  
Joseph L. Walker ◽  
Eric C. Orenstein
Keyword(s):  
Mathematics ◽  
2021 ◽  
Vol 9 (9) ◽  
pp. 936
Author(s):  
Jianli Shao ◽  
Xin Liu ◽  
Wenqing He

Imbalanced data exist in many classification problems. The classification of imbalanced data has remarkable challenges in machine learning. The support vector machine (SVM) and its variants are popularly used in machine learning among different classifiers thanks to their flexibility and interpretability. However, the performance of SVMs is impacted when the data are imbalanced, which is a typical data structure in the multi-category classification problem. In this paper, we employ the data-adaptive SVM with scaled kernel functions to classify instances for a multi-class population. We propose a multi-class data-dependent kernel function for the SVM by considering class imbalance and the spatial association among instances so that the classification accuracy is enhanced. Simulation studies demonstrate the superb performance of the proposed method, and a real multi-class prostate cancer image dataset is employed as an illustration. Not only does the proposed method outperform the competitor methods in terms of the commonly used accuracy measures such as the F-score and G-means, but also successfully detects more than 60% of instances from the rare class in the real data, while the competitors can only detect less than 20% of the rare class instances. The proposed method will benefit other scientific research fields, such as multiple region boundary detection.


Science ◽  
1937 ◽  
Vol 86 (2235) ◽  
pp. 398-399
Author(s):  
G. E. MacGinitie

2014 ◽  
Vol 10 ◽  
pp. 1228-1232 ◽  
Author(s):  
Jens Schmidt ◽  
Zeinab Khalil ◽  
Robert J Capon ◽  
Christian B W Stark

The heronapyrroles A–C have first been isolated from a marine-derived Streptomyces sp. (CMB-0423) in 2010. Structurally, these natural products feature an unusual nitropyrrole system to which a partially oxidized farnesyl chain is attached. The varying degree of oxidation of the sesquiterpenyl subunit in heronapyrroles A–C provoked the hypothesis that there might exist other hitherto unidentified metabolites. On biosynthetic grounds a mono-tetrahydrofuran-diol named heronapyrrole D appeared a possible candidate. We here describe a short asymmetric synthesis of heronapyrrole D, its detection in cultivations of CMB-0423 and finally the evaluation of its antibacterial activity. We thus demonstrate that biosynthetic considerations and the joint effort of synthetic and natural product chemists can result in the identification of new members of a rare class of natural products.


2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Fabio Benedetti ◽  
Meike Vogt ◽  
Urs Hofmann Elizondo ◽  
Damiano Righetti ◽  
Niklaus E. Zimmermann ◽  
...  

2021 ◽  
Vol 8 ◽  
Author(s):  
Jacquelyn N. Cresswell ◽  
Peter J. van Hengstum

Karst subterranean estuaries (KSEs) are created from the two- and three-way mixing of saline groundwater, rain, and oceanic water in the subsurface on carbonate landscapes, and this hydrographic framework promotes unique physical processes, biogeochemical cycling, and biological communities. Here we provide evidence that the source and quantity of particulate organic matter (POM) that is delivered to the benthos strongly correlates to benthic habitat partitioning in the oxygenated marine sectors of KSEs. A dataset of benthic foraminifera at 128 different locations from several large flooded cave systems in Bermuda were compiled and evaluated against common environmental characteristics (e.g., tidal exposure, substrate particle size, bulk organic matter, C:N, total organic carbon, and δ13Corg). Benthic areas receiving more carbon isotopically depleted organic matter sources (mean δ13Corg values < −23.2‰, C:N ratios >11), most likely from the terrestrial surface and some marine plankton, were dominated by Trochammina inflata, Bolivina spp., and Helenina anderseni. In contrast, benthic areas receiving more carbon isotopically enriched organic matter sources (mean δ13Corg values > −21.6‰, C:N ratios <10), most likely from marine plankton transported through marine cave openings cave from adjacent coastal waters, were dominated by Spirophthalmidium emaciatum, Spirillina vivipara, Patellina corrugata, and Rotaliella arctica. The benthic foraminifera most distal from any cave entrances were dominated by taxa also known from the deep-sea (e.g., Rotaliella, Spirophthalmidium) in sediment with the lowest bulk organic matter content (mean: 6%), or taxa that prefer hard substrates and are potentially living attached to cave walls (Patellina, Spirillina). While physical groundwater characteristics (e.g., salinity, dissolved oxygen) are expected drivers of benthic ecosystems in KSEs, these results suggest that POM source, quantity, and delivery mechanisms (e.g., groundwater-seawater circulation mechanisms, terrestrial flux) play an important role in benthic habitat partitioning and the spatial variability of biogeochemical cycles in the oxygenated marine sector of KSEs.


2009 ◽  
Vol 26 (6) ◽  
pp. 729 ◽  
Author(s):  
Kelsey L. Poulson ◽  
R. Drew Sieg ◽  
Julia Kubanek

2000 ◽  
Vol 45 (5) ◽  
pp. 1097-1111 ◽  
Author(s):  
Morten Søndergaard ◽  
Peter J. le B. Williams ◽  
Gustave Cauwet ◽  
Bo Riemann ◽  
Carol Robinson ◽  
...  

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