Performance of classification based on PCA, linear SVM, and Multi-kernel SVM

Author(s):  
Saruar Alam ◽  
Moonsoo Kang ◽  
Jae-Young Pyun ◽  
Goo-Rak Kwon
Keyword(s):  
2016 ◽  
Vol 41 (6) ◽  
Author(s):  
Çağın Kandemir Çavaş ◽  
Selen Yildirim

AbstractIntroduction:Intrinsically disordered proteins occur when the deformations happen in the tertiary structure of a protein. Disordered proteins play an important role in DNA/RNA/protein recognition, modulation of specificity/affinity of protein binding, molecular threading, activation by cleavage. The aim of the study is the identification of ordered-disordered protein which is a very challenging problem in bioinformatics.Methods:In this paper, this kind of proteins is classified by using linear and kernel (nonlinear) support vector machines (SVM).Results:Overall accuracy rate of linear SVM and kernel SVM in identifying the ordered-disordered proteins are 86.54% and 94.23%, respectively.Discussion and conclusion:Since kernel SVM gives the best discriminating scheme, it can be referred that it is a very satisfying method to identify ordered-disordered structures of proteins.


2020 ◽  
pp. 1-1
Author(s):  
Wei Qiu ◽  
Qiu Tang ◽  
Kunzhi Zhu ◽  
Wenxuan Yao ◽  
Jun Ma ◽  
...  

Author(s):  
Jun Yang ◽  
Laijun Sun ◽  
Wang Xing ◽  
Guojun Feng ◽  
Hongyi Bai ◽  
...  

Author(s):  
Nawaf Abu-Khalaf ◽  
Mazen Salman

Early detection of plant disease requires usually elaborating methods techniques and especially when symptoms are not visible. Olive Leaf Spot (OLS) infecting upper surface of olive leaves has a long latent infection period. In this work, VIS/NIR spectroscopy was used to determine the latent infection and severity of the pathogens. Two different classification methods were used, Partial Least Squared-Discrimination Analysis (PLS-DA) (linear method) and Support Vector Machine (SVM) (non-linear). SVM-classification was able to classify severity levels 0, 1, 2, 3, 4, and 5 with classification rates of 94, 90, 73, 79, 83 and 100%, respectively The overall classification rate was about 86%. PLS-DA was able to classify two different severity groups (first group with severity 0, 1, 2, 3, and second group with severity 4, 5), with a classification rate greater than 95%. The results promote further researches, and the possibility of evaluation OLS in-situ using portable VIS/NIR devices.


Author(s):  
Nawaf Abu-Khalaf ◽  
Mazen Salman

Early detection of plant disease requires usually elaborating methods techniques and especially when symptoms are not visible. Olive Leaf Spot (OLS) infecting upper surface of olive leaves has a long latent infection period. In this work, VIS/NIR spectroscopy was used to determine the latent infection and severity of the pathogens. Two different classification methods were used, Partial Least Squared-Discrimination Analysis (PLS-DA) (linear method) and Support Vector Machine (SVM) (non-linear). SVM-classification was able to classify severity levels 0, 1, 2, 3, 4, and 5 with classification rates of 94, 90, 73, 79, 83 and 100%, respectively The overall classification rate was about 86%. PLS-DA was able to classify two different severity groups (first group with severity 0, 1, 2, 3, and second group with severity 4, 5), with a classification rate greater than 95%. The results promote further researches, and the possibility of evaluation OLS in-situ using portable VIS/NIR devices.


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