Development of polymorphic expressed sequence tag-derived microsatellites for the extension of the genetic linkage map of the black tiger shrimp (Penaeus monodon)

2006 ◽  
Vol 37 (4) ◽  
pp. 363-368 ◽  
Author(s):  
C. Maneeruttanarungroj ◽  
S. Pongsomboon ◽  
S. Wuthisuthimethavee ◽  
S. Klinbunga ◽  
K. J. Wilson ◽  
...  
Keyword(s):  
Linkage Map ◽  
Genetic Linkage ◽  
Genetic Linkage Map ◽  
Expressed Sequence Tag ◽  
Penaeus Monodon ◽  
Black Tiger Shrimp ◽  
Tiger Shrimp ◽  
Expressed Sequence

scholarly journals A High-Density Genetic Linkage Map and QTL Mapping for Sex in Black Tiger Shrimp (Penaeus monodon)

2019 ◽  
Vol 10 ◽  
Author(s):  
Liang Guo ◽  
Yu-Hui Xu ◽  
Nan Zhang ◽  
Fa-Lin Zhou ◽  
Jian-Hua Huang ◽  
...  
Keyword(s):  
Qtl Mapping ◽  
Linkage Map ◽  
Genetic Linkage ◽  
Genetic Linkage Map ◽  
Penaeus Monodon ◽  
High Density ◽  
Black Tiger Shrimp ◽  
Tiger Shrimp

Developing microsatellite markers from cDNA: a tool for adding expressed sequence tags to the genetic linkage map of the chicken

1998 ◽  
Vol 29 (2) ◽  
pp. 85-90 ◽  
Author(s):  
C. P. Ruyter-Spira ◽  
D. J. De Koning ◽  
J. J. Van Der Poel ◽  
R. P. M. A. Crooijmans ◽  
R. J. M. Dijkhof ◽  
...  
Keyword(s):  
Microsatellite Markers ◽  
Linkage Map ◽  
Expressed Sequence Tags ◽  
Genetic Linkage ◽  
Genetic Linkage Map ◽  
Expressed Sequence

scholarly journals The Development of a High Density Linkage Map for Black Tiger Shrimp (Penaeus monodon) Based on cSNPs

PLoS ONE ◽  
2014 ◽  
Vol 9 (1) ◽  
pp. e85413 ◽  
Author(s):  
Matthew Baranski ◽  
Gopalapillay Gopikrishna ◽  
Nicholas A. Robinson ◽  
Vinaya Kumar Katneni ◽  
Mudagandur S. Shekhar ◽  
...  
Keyword(s):  
Linkage Map ◽  
Penaeus Monodon ◽  
High Density ◽  
Black Tiger Shrimp ◽  
Tiger Shrimp ◽  
High Density Linkage Map

An SSR-based genetic linkage map of the model grass Brachypodium distachyon

Genome ◽  
2010 ◽  
Vol 53 (1) ◽  
pp. 1-13 ◽  
Author(s):  
David F. Garvin ◽  
Neil McKenzie ◽  
John P. Vogel ◽  
Todd C. Mockler ◽  
Zachary J. Blankenheim ◽  
...  
Keyword(s):  
Linkage Map ◽  
Genetic Linkage ◽  
Genetic Linkage Map ◽  
Expressed Sequence Tag ◽  
Brachypodium Distachyon ◽  
Molecular Genetic ◽  
Rice Genome ◽  
Artificial Chromosome ◽  
Grass Species ◽  
Linkage Groups

The grass species Brachypodium distachyon (hereafter, Brachypodium) has been adopted as a model system for grasses. Here, we describe the development of a genetic linkage map of Brachypodium. The genetic linkage map was developed with an F2 population from a cross between the diploid Brachypodium lines Bd3-1 and Bd21. The map was populated with polymorphic simple sequence repeat (SSR) markers from Brachypodium expressed sequence tag (EST) and bacterial artificial chromosome (BAC) end sequences and conserved orthologous sequence (COS) markers from other grass species. The map is 1386 cM in length and consists of 139 marker loci distributed across 20 linkage groups. Five of the linkage groups exceed 100 cM in length, with the largest being 231 cM long. Assessment of colinearity between the Brachypodium linkage map and the rice genome sequence revealed significant regions of macrosynteny between the two genomes, as well as rearrangements similar to those reported in other grass comparative structural genomics studies. The Brachypodium genetic linkage map described here will serve as a new tool to pursue a range of molecular genetic analyses and other applications in this new model plant system.

scholarly journals Expressed Sequence Tag Analysis for Identification and Characterization of Sex-Related Genes in the Giant Tiger Shrimp Penaeus monodon

BMB Reports ◽  
2007 ◽  
Vol 40 (4) ◽  
pp. 501-510 ◽  
Author(s):  
Rachanimuk Preechaphol ◽  
Rungnapa Leelatanawit ◽  
Kanchana Sittikankeaw ◽  
Sirawut Klinbunga ◽  
Bavornlak Khamnamtong ◽  
...  
Keyword(s):  
Expressed Sequence Tag ◽  
Penaeus Monodon ◽  
Tiger Shrimp ◽  
Expressed Sequence Tag Analysis ◽  
Identification And Characterization ◽  
Expressed Sequence

scholarly journals Genetic linkage map of the guppy, Poecilia reticulata , and quantitative trait loci analysis of male size and colour variation

2009 ◽  
Vol 276 (1665) ◽  
pp. 2195-2208 ◽  
Author(s):  
Namita Tripathi ◽  
Margarete Hoffmann ◽  
Eva-Maria Willing ◽  
Christa Lanz ◽  
Detlef Weigel ◽  
...  
Keyword(s):  
Quantitative Trait Loci ◽  
Linkage Map ◽  
Quantitative Trait ◽  
Genetic Linkage ◽  
Poecilia Reticulata ◽  
Genetic Linkage Map ◽  
Expressed Sequence Tag ◽  
Colour Pattern ◽  
Linkage Data ◽  
Trait Loci

We report construction of a genetic linkage map of the guppy genome using 790 single nucleotide polymorphism markers, integrated from six mapping crosses. The markers define 23 linkage groups (LGs), corresponding to the known haploid number of guppy chromosomes. The map, which spans a genetic length of 899 cM, includes 276 markers linked to expressed genes (expressed sequence tag), which have been used to derive broad syntenic relationships of guppy LGs with medaka chromosomes. This combined linkage map should facilitate the advancement of genetic studies for a wide variety of complex adaptive phenotypes relevant to natural and sexual selection in this species. We have used the linkage data to predict quantitative trait loci for a set of variable male traits including size and colour pattern. Contributing loci map to the sex LG for many of these traits.

Tissue-Specific Expressed Sequence Tags from the Black Tiger Shrimp Penaeus monodon

1999 ◽  
Vol 1 (5) ◽  
pp. 465-476 ◽  
Author(s):  
Sigrid A. Lehnert ◽  
Kate J. Wilson ◽  
Keren Byrne ◽  
Stephen S. Moore
Keyword(s):  
Expressed Sequence Tags ◽  
Penaeus Monodon ◽  
Tissue Specific ◽  
Black Tiger Shrimp ◽  
Tiger Shrimp ◽  
Expressed Sequence

Constructing a genetic linkage map and mapping quantitative trait loci for skeletal traits in Japanese flounder

Biologia ◽  
2013 ◽  
Vol 68 (6) ◽  
Author(s):  
Yi Liu ◽  
Yongxin Liu ◽  
Yingjie Liu ◽  
Xiaoyan Zhang ◽  
Fei Si ◽  
...  
Keyword(s):  
Linkage Map ◽  
Quantitative Trait ◽  
Genetic Linkage ◽  
Genetic Linkage Map ◽  
Expressed Sequence Tag ◽  
Average Distance ◽  
Doubled Haploids ◽  
Japanese Flounder ◽  
Type Ii ◽  
Linkage Groups

AbstractA genetic linkage map of Japanese flounder was constructed using 165 doubled haploids (DHs) derived from a single female. A total of 574 genomic microsatellites (type II SSRs) and expressed sequence tag (EST)-derived markers (EST-SSRs) were mapped to 24 linkage groups. The length of linkage map was estimated as 1270.9 centiMorgans (cM), with an average distance between markers of 2.2 cM. The EST-SSRs were used together with type II SSR markers to construct the Japanese flounder genetic linkage map which will facilitate identify quantitative trait locus (QTL) controlling important economic traits in Japanese flounder. Thus, twelve skeletal traits at 2 years of age were measured for all DHs. Forty-one QTLs were detected on 14 linkage groups and totally account for a small proportion of phenotypic variation (4.5 to 17.3%). Most of QTLs detected distribute on linkage groups 5 (9 QTLs), 8 (9 QTLs), 9 (5 QTLs) and 20 (4 QTLs), in which, some QTLs perform the pleiotropy.

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