Mitochondrial haplotypes reveal a strong genetic structure for three Indian sheep breeds

2007 ◽  
Vol 38 (5) ◽  
pp. 460-466 ◽  
Author(s):  
V. C. Pardeshi ◽  
N. Y. Kadoo ◽  
M. N. Sainani ◽  
J. R. S. Meadows ◽  
J. W. Kijas ◽  
...  
2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Ranganathan Kamalakkannan ◽  
Satish Kumar ◽  
Karippadakam Bhavana ◽  
Vandana R. Prabhu ◽  
Carolina Barros Machado ◽  
...  

AbstractIndia ranks the second in the world in terms of its sheep population with approximately 74.26 million represented by 44 well-described breeds in addition to several non-descript populations. Genetic diversity and phylogeography of Indian sheep breeds remain poorly understood, particularly for south Indian breeds. To have a comprehensive view of the domestication history of Indian sheep, we sequenced the mitochondrial DNA (mtDNA) control region (D-loop) and cytochrome b gene (CYTB) of 16 Indian domestic sheep breeds, most of them (13) from the south India. We analysed these sequences along with published data of domestic and wild sheep from different countries, including India. The haplotype diversity was relatively high in Indian sheep, which were classified into the three known mtDNA lineages, namely A, B and C. Lineage A was predominant among Indian sheep whereas lineages B and C were observed at low frequencies but C was restricted to the breeds of north and east India. The median joining network showed five major expanding haplogroups of lineage A (A1–A5). Out of which, A2, A4 and A5 were more frequent in Indian sheep in contrast to breeds from other parts of the world. Among the 27 Indian sheep breeds analysed, Mandya and Sonadi breeds were significantly different from other Indian breeds in the MDS analyses. This was explained by a very high contribution of lineage B into these two breeds. The Approximate Bayesian Computation (ABC) provided evidence for the domestication of lineage A sheep in the Indian subcontinent. Contrary to the current knowledge, we also found strong support for the introduction of lineage B into Indian subcontinent through sea route rather than from the Mongolian Plateau. The neighbour-joining tree of domestic and wild sheep revealed the close genetic relationship of Indian domestic sheep with Pakistani wild sheep O. vignei blanfordi. Based on our analyses and archaeological evidences, we suggest the Indian subcontinent as one of the domestication centres of the lineage A sheep, while lineage B sheep might have arrived into India from elsewhere via Arabian sea route. To the best of our knowledge, this is the first comprehensive study on Indian sheep where we have analysed more than 740 animals belonging to 27 sheep breeds raised in various regions of India. Our study provides insight into the understanding of the origin and migratory history of Indian sheep.


2016 ◽  
Vol 22 (2) ◽  
pp. 170
Author(s):  
Rajiv Kumar ◽  
Shringarika Gupta ◽  
A.S. Meena ◽  
S.M.K. Naqvi ◽  
S. Kumar

2015 ◽  
Vol 21 (1) ◽  
pp. 13
Author(s):  
M.G. Sahare ◽  
A.D. Sawaimul ◽  
S.Z. Ali ◽  
A.R. Sirothia ◽  
S. Kumar

Heredity ◽  
2007 ◽  
Vol 99 (6) ◽  
pp. 620-631 ◽  
Author(s):  
L-J Lawson Handley ◽  
K Byrne ◽  
F Santucci ◽  
S Townsend ◽  
M Taylor ◽  
...  

2002 ◽  
Vol 53 (5) ◽  
pp. 849 ◽  
Author(s):  
David Gopurenko ◽  
Jane M. Hughes

The population genetic structure of the estuarine crab, Scylla serrata (Forskål, 1775), was examined among shelf-connected locations and across a historical bio-geographic barrier. Over 300 individuals were sampled from multiple locations within coastal regions (western, northern and eastern) of Australia and analysed for mutational differences at a mitochondrial coding gene (COI). Analysis of molecular variance indicated mitochondrial haplotypes to be structured regionally (P < 0.001), which contrasted with evidence of genetic panmixia within regions. Regional genetic structure broadly correlated with hydrological circulation, supporting the contention that release of propagules away from the estuary may allow genetic connectivity among widespread shelf-connected S. serrata populations. That similar patterns of maternal gene flow are absent among trans-oceanic populations may indicate that the spatial scale of effective dispersal for this species is generally limited to areas of coastal shelf. Two distinct clades of haplotypes were geographically separated either side of the Torres Strait, a narrow sea channel connecting the northern and eastern regions of coastal Australia. This pattern of historical genetic separation is concordant with a number of other marine species across northern Australia and may indicate a shared history of vicariance induced by eustasy. Alternatively, we suggest that sundering of S. serrata populations resulting in cladogenesis may have its origins outside of the northern Australian region.


BMC Genetics ◽  
2014 ◽  
Vol 15 (1) ◽  
Author(s):  
Salvatore Mastrangelo ◽  
◽  
Rosalia Di Gerlando ◽  
Marco Tolone ◽  
Lina Tortorici ◽  
...  

Author(s):  
Kush Shrivastava ◽  
Pushpendra Kumar ◽  
Mohd. Faheem Khan ◽  
Shankar Dayal ◽  
Nihar Ranjan Sahoo ◽  
...  

2010 ◽  
Vol 70 (4) ◽  
pp. 646-651 ◽  
Author(s):  
Rodrigo de la Barra ◽  
Héctor Uribe ◽  
Etel Latorre ◽  
Fermín San Primitivo ◽  
Juan Arranz

2016 ◽  
Vol 17 (3) ◽  
pp. 766 ◽  
Author(s):  
J. ARAGAY ◽  
D. VITALES ◽  
A. GÓMEZ GARRETA ◽  
M. A. RIBERA SIGUAN ◽  
F. STEEN ◽  
...  

Dictyota cyanoloma, a distinctive brown algal species characterized by a blue-iridescent margin, was recently reported as an introduced species in the Mediterranean Sea (Steen et al., 2016) but little is known about its distribution dynamics, morphological plasticity and genetic structure. In the present integrative study, we evaluate its past and present occurrence along the Mediterranean Iberian coast, assess the species’ phenology in Palamós (Girona, Spain) and analyze the haplotype diversity by sequencing 49 individuals from nine sampling sites for different chloroplast and mitochondrial DNA regions. Although D. cyanoloma currently occurs along the Mediterranean Iberian coast (in 19 of 36 localities sampled between Algeciras and Llançà, mostly in marinas and harbour environments), we were not able to find any herbarium material of this species (at BCN-Phyc and MA) predating the year 1987. In Palamós, D. cyanoloma is present all through the year, with a maximum development in winter and a minimum in summer. Fertile specimens are absent during summer (July and August). Sporophytes are dominant from January to June and dioecious gametophytes were found only in February, March and June. Information about the antheridia, which has never been described before, is provided. Two chloroplast and three mitochondrial haplotypes were observed, indicating that multiple introductions of D. cyanoloma occurred in the study area. Additionally, the genetic structure suggests that spread did not occur through simple advancing wave fronts but by several long-distance dispersal events. Further studies employing microsatellite markers could potentially offer a better resolution to unravel expansion and colonisation dynamics of D. cyanoloma in the Mediterranean Sea.


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