scholarly journals Soluble and particulate methane monooxygenase gene clusters of the type I methanotroph Methylovulum miyakonense  HT12

2010 ◽  
Vol 312 (1) ◽  
pp. 71-76 ◽  
Author(s):  
Hiroyuki Iguchi ◽  
Hiroya Yurimoto ◽  
Yasuyoshi Sakai
2007 ◽  
Vol 277 (2) ◽  
pp. 157-164 ◽  
Author(s):  
Takamichi Nakamura ◽  
Toshihiro Hoaki ◽  
Satoshi Hanada ◽  
Akihiko Maruyama ◽  
Yoichi Kamagata ◽  
...  

2017 ◽  
Vol 5 (3) ◽  
Author(s):  
Jason Stephenson ◽  
Deepak Kumaresan ◽  
Alexandra M. Hillebrand-Voiculescu ◽  
Elliot Brooks ◽  
Andrew S. Whiteley ◽  
...  

ABSTRACT We describe the draft genome sequence of “Candidatus Methylomonas sp. LWB” isolated from Movile Cave microbial mat samples. The genome contains both the soluble and particular methane monooxygenase; however, one of the putative particulate methane monooxygenase gene clusters is ordered pmoABC rather than in the canonical gene arrangement of pmoCAB.


2000 ◽  
Vol 66 (3) ◽  
pp. 966-975 ◽  
Author(s):  
Bettina Gilbert ◽  
Ian R. McDonald ◽  
Ruth Finch ◽  
Graham P. Stafford ◽  
Allan K. Nielsen ◽  
...  

ABSTRACT The particulate methane monooxygenase gene clusters,pmoCAB, from two representative type II methanotrophs of the α-Proteobacteria, Methylosinus trichosporium OB3b and Methylocystis sp. strain M, have been cloned and sequenced. Primer extension experiments revealed that the pmo cluster is probably transcribed from a single transcriptional start site located 300 bp upstream of the start of the first gene, pmoC, for Methylocystis sp. strain M. Immediately upstream of the putative start site, consensus sequences for ς70 promoters were identified, suggesting that thesepmo genes are recognized by ς70 and negatively regulated under low-copper conditions. The pmogenes were cloned in several overlapping fragments, since parts of these genes appeared to be toxic to the Escherichia colihost. Methanotrophs contain two virtually identical copies ofpmo genes, and it was necessary to use Southern blotting and probing with pmo gene fragments in order to differentiate between the two pmoCAB clusters in both methanotrophs. The complete DNA sequence of one copy of pmogenes from each organism is reported here. The gene sequences are 84% similar to each other and 75% similar to that of a type I methanotroph of the γ-Proteobacteria, Methylococcus capsulatus Bath. The derived proteins PmoC and PmoA are predicted to be highly hydrophobic and consist mainly of transmembrane-spanning regions, whereas PmoB has only two putative transmembrane-spanning helices. Hybridization experiments showed that there are two copies ofpmoC in both M. trichosporium OB3b andMethylocystis sp. strain M, and not three copies as found in M. capsulatus Bath.


2001 ◽  
Vol 183 (5) ◽  
pp. 1810-1812 ◽  
Author(s):  
Sergei Stolyar ◽  
Marion Franke ◽  
Mary E. Lidstrom

ABSTRACT The expression of the two gene clusters encoding the particulate methane monooxygenase (pMMO) in Methylococcus capsulatusBath was assessed by analysis of transcripts and by use of chromosomal gene fusions. The results suggest that the two clusters are functionally redundant but that relative expression alters depending on the copper levels available for growth.


2005 ◽  
Vol 55 (5) ◽  
pp. 1877-1884 ◽  
Author(s):  
Jun Tsubota ◽  
Bulat Ts. Eshinimaev ◽  
Valentina N. Khmelenina ◽  
Yuri A. Trotsenko

A novel moderately thermophilic methanotroph, strain MYHTT, was isolated from a hot spring in Japan. The isolate grew on methane or methanol at 37–67 °C, and optimally at 57–59 °C. It was found to be a Gram-negative aerobe, with colourless colonies of non-motile coccoid cells, possessing type I intracytoplasmic membranes and regularly arranged surface layers of linear (p2) symmetry. Strain MYHTT expressed only the particulate methane monooxygenase and employed the ribulose monophosphate pathway for formaldehyde assimilation. It is a neutrophilic and halotolerant organism capable of growth at pH 6·5–7·5 (optimum pH 6·8) and in up to 3 % NaCl (optimum 0·5–1 % NaCl). Phylogenetic analysis based on 16S rRNA gene sequence analysis indicated that strain MYHTT is most closely related to the thermophilic undescribed methanotroph ‘Methylothermus’ HB (91 % identity) and the novel halophilic methanotroph Methylohalobius crimeensis 10KiT (90 % identity). Comparative sequence analysis of particulate methane monooxygenase (pmoA) genes also confirmed the clustering of strain MYHTT with ‘Methylothermus’ HB and Methylohalobius crimeensis 10KiT (98 and 92 % derived amino acid sequence identity, respectively). The DNA G+C content was 62·5 mol%. The major cellular fatty acids were C16 : 0 (37·2 %) and C18 : 1 ω9c (35·2 %) and the major polar lipids were phosphatidylethanolamine and phosphatidylglycerol. The major ubiquinone was Q-8. On the basis of comparative phenotypic and genotypic characteristics, a new genus and species, Methylothermus thermalis gen. nov., sp. nov., is proposed, with MYHTT as the type strain (=VKM B-2345T=IPOD FERM P-19714T).


2015 ◽  
Vol 81 (7) ◽  
pp. 2466-2473 ◽  
Author(s):  
Muhammad Farhan Ul-Haque ◽  
Bhagyalakshmi Kalidass ◽  
Alexey Vorobev ◽  
Bipin S. Baral ◽  
Alan A. DiSpirito ◽  
...  

ABSTRACTMethanotrophs can express a cytoplasmic (soluble) methane monooxygenase (sMMO) or membrane-bound (particulate) methane monooxygenase (pMMO). Expression of these MMOs is strongly regulated by the availability of copper. Many methanotrophs have been found to synthesize a novel compound, methanobactin (Mb), that is responsible for the uptake of copper, and methanobactin produced byMethylosinus trichosporiumOB3b plays a key role in controlling expression of MMO genes in this strain. As all known forms of methanobactin are structurally similar, it was hypothesized that methanobactin from one methanotroph may alter gene expression in another. WhenMethylosinus trichosporiumOB3b was grown in the presence of 1 μM CuCl2, expression ofmmoX, encoding a subunit of the hydroxylase component of sMMO, was very low.mmoXexpression increased, however, when methanobactin fromMethylocystissp. strain SB2 (SB2-Mb) was added, as did whole-cell sMMO activity, but there was no significant change in the amount of copper associated withM. trichosporiumOB3b. IfM. trichosporiumOB3b was grown in the absence of CuCl2, themmoXexpression level was high but decreased by several orders of magnitude if copper prebound to SB2-Mb (Cu-SB2-Mb) was added, and biomass-associated copper was increased. Exposure ofMethylosinus trichosporiumOB3b to SB2-Mb had no effect on expression ofmbnA, encoding the polypeptide precursor of methanobactin in either the presence or absence of CuCl2.mbnAexpression, however, was reduced when Cu-SB2-Mb was added in both the absence and presence of CuCl2. These data suggest that methanobactin acts as a general signaling molecule in methanotrophs and that methanobactin “piracy” may be commonplace.


2021 ◽  
Author(s):  
George Cutsail III ◽  
Matthew O Ross ◽  
Amy C Rosenzweig ◽  
Serena DeBeer

The enzymatic conversion of the greenhouse gas, methane, to a liquid fuel, methanol, is performed by methane monooxygenases (MMOs) under mild conditions. The copper stoichiometry of particulate MMO (pMMO) has...


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