Changes in Soil Organic Carbon and Its Labile Fractions after Land Conversion from Paddy Fields to Woodlands or Corn Fields

Land use change could significantly affect soil organic carbon (SOC) and other soil chemical properties. However, the responses of soil labile C fractions at different soil depths to land-use change are not still clear. The aim of this study was to investigate the effect of paddy field conversion on woodlands or corn fields on total soil organic C (TOC) and its labile C fractions including particulate organic C (POC), microbial biomass C (MBC), and potassium permanganate-oxidizable C (KMnO4–C) along a 0–100 cm soil profile. Our results indicate that soil TOC concentrations increased by 3.88 g kg−1 and 3.47 g kg−1 in the 0–5 cm soil layer and 5.33 g kg−1 and 4.68 g kg−1 in the 5–20 cm soil layer during 13 years after the conversion from paddy fields to woodlands and corn fields, respectively. In the 20–40 cm soil layer, the woodlands had the highest TOC concentration (12.3 g kg−1), which was 5.13 g kg−1 and 3.5 g kg−1 higher than that of the paddy and corn fields, respectively. The increase in TOC was probably due to the absence of soil disturbance and greater root residue input into the woodland soil. In corn fields, pig manure addition contributed to the increase in soil organic C concentrations. In addition, the proportion of soil KMnO4–C increased after conversion from paddy fields to woodlands or corn fields in the 0–40 cm soil layer, ranging from 39.9–56.6% for the woodlands and 24.6–32.9% for the corn fields. The soil POC content was significantly higher in woodland and corn field soils than in paddy field soils at lower soil depths (5–40 cm). However, there were no differences in MBC contents in the whole soil profile between the woodlands and paddy fields. The KMnO4–C and MBC was the most important factor affecting the CMI values through the whole 0–100 cm soil profile. Overall, converting paddy fields to woodlands or corn fields increased the TOC and labile C fractions in the 0–40 cm soil layer. Future studies should focus on the response of the deeper soil C pool to land-use change.

Ecological and Health Risk Assessment of Trace Metal Pollution in Vegetable Field Soils from the Eastern Nile Delta, Egypt

The accumulation of trace metals in vegetable field soils is of expanding worry because of the potential health hazards and its detrimental effects on soil ecosystems. To investigate the state of trace metal pollution in vegetable field soils, 60 surface soil samples were collected from vegetable fields across the Eastern Nile Delta region, Egypt. The results explained that the concentrations of Cu, Mn and Ni were lesser than their corresponding background values, while the concentrations of Cd, Co, Pb and Zn were exceed their background values. The pollution indices showed that the study soil experienced low to moderate contamination, and the Cd and Cr contamination was serious. The hazard index values of nine trace metals signified that there no adverse non-carcinogenic risk for adults and children. The carcinogenic risk of Cd, Co, Ni and Pb for both age groups was within the acceptable limits, while Cr had critical carcinogenic hazard to children. Overall, the quality of studied soils is relative safety, although some samples impose serious pollution problems by Cd and Cr. Thus, properly monitor trace metals and soil management action should be applied to reduce further soil pollution in vegetable fields in the Eastern Nile Delta.

Developing a Real-time PCR Assay for Direct Identification and Quantification of Soybean Cyst Nematode, Heterodera glycines, in Soil and Its Discrimination from Sugar Beet Cyst Nematode, Heterodera schachtii

The soybean cyst nematode (SCN) Heterodera glycines continues to be a major threat to soybean production worldwide. Morphological discrimination between SCN and other nematodes of the H. schachtii sensu stricto group is not only difficult and time-consuming, but also requires high expertise in nematode taxonomy. Molecular assays were developed to differentiate SCN from sugar beet cyst nematode (SBCN) and other nematodes; and to quantify SCN directly from DNA extracts of field soils. SCN and SBCN-specific quantitative real-time PCR (qPCR) primers were designed from a nematode-secreted CLAVATA gene and used for these assays. The primers were evaluated based on specificity, efficiency, and target specificity to SCN or SBCN using DNA from 20 isolates of SCN and 32 isolates of other plant-parasitic nematodes. A standard curve relating threshold cycle and log values of nematode numbers was generated from artificially infested soils and was used to quantify SCN in naturally infested field soils. There was a high correlation between the SCN numbers estimated from naturally infested field soils by conventional methods, and the numbers quantified using the SYBR Green I-based qPCR assay. The qPCR assay is highly specific and sensitive and provides improved SCN detection sensitivity down to 1 SCN egg in 20 g of soil (10 eggs/200 g soil). This assay is useful for efficient detection and quantification of SCN directly from field soil. Species-specific conventional PCR assays were also developed each for SCN and SBCN, alongside a qPCR assay that simultaneously discriminates SCN from SBCN. These assays require no expertise in nematode taxonomy and morphology, and may serve as useful diagnostic tools in research, diagnostic labs, and extension services for SCN management. Sensitive and accurate detection and quantification of SCN are essential for recommending effective management measures against SCN. We also investigated the impact of soil texture and nematode life stage on molecular quantification of SCN.

Molecular Detection and Quantification of the Striga Seedbank in Ethiopian Sorghum Field Soils

Aims Striga hermonthica is a devastating parasitic weed in Sub-Saharan Africa (SSA) and its persistent soil seedbank is the major contributing factor for its prevalence and persistence. So far, there is little to no information on the Striga seedbank density in agricultural fields in SSA due to the lack of reliable detection and quantification methods. Methods We developed a high-throughput method that combines density- and size-based separation techniques with quantitative polymerase chain reaction (qPCR)-based detection of Striga seeds in soil. The method was optimized and validated on two physicochemically different Striga-free Dutch agricultural soils by introducing increasing numbers of Striga seeds (0, 1, 3, 9, 27, 81 and 243 seeds). Results The results showed that as little as one seed of S. hermonthica per 150 g of soil can be detected. This technique was subsequently tested on soil samples of 48 sorghum fields from different agro-ecological zones in Ethiopia to map the geospatial distribution of the Striga seedbank along a trajectory of more than 1500 km. Considerable variation in Striga seed densities was observed for these soils: in 75% of the field soils, Striga seeds were detectable up to 86 seeds per 150 g of soil. Correlation analyses further revealed a significant non-linear relationship between the seed density and Striga incidence assessed in the same sorghum field soils at the time of soil sampling. Conclusions The method developed allows for high-through-put and accurate mapping of the Striga seedbank in physicochemically diverse field soils and can be used to predict Striga incidence and to assess the impact of management strategies on Striga seedbank dynamics.

Effect of Clay, Soil Organic Matter, and Soil pH on Initial and Residual Weed Control with Flumioxazin

Greenhouse studies were conducted to evaluate the effects of soil organic matter content and soil pH on initial and residual weed control with flumioxazin by planting selected weed species in various lab-made and field soils. Initial control was determined by planting weed seeds into various lab-made and field soils treated with flumioxazin (71 g ha−1). Seeds of Echinochloa crus-galli (barnyard grass), Setaria faberi (giant foxtail), Amaranthus retroflexus (redroot pigweed), and Abutilon theophrasti (velvetleaf) were incorporated into the top 1.3 cm of each soil at a density of 100 seeds per pot, respectively. Emerged plants were counted and removed in both treated and non-treated pots two weeks after planting and each following week for six weeks. Flumioxazin control was evaluated by calculating percent emergence of weeds in treated soils compared to the emergence of weeds in non-treated soils. Clay content was not found to affect initial flumioxazin control of any tested weed species. Control of A. theophrasti, E. crus-galli, and S. faberi was reduced as soil organic matter content increased. The control of A. retroflexus was not affected by organic matter. Soil pH below 6 reduced flumioxazin control of A. theophrasti, and S. faberi but did not affect the control of A. retroflexus and E. crus-galli. Flumioxazin residual control was determined by planting selected weed species in various lab-made and field soils 0, 2, 4, 6, and 8 weeks after treatment. Eight weeks after treatment, flumioxazin gave 0% control of A. theophrasti and S. faberi in all soils tested. Control of A. retroflexus and Chenopodium album (common lambsquarters) was 100% for the duration of the experiment, except when soil organic matter content was greater than 3% or the soil pH 7. Eight weeks after treatment, 0% control was only observed for common A. retroflexus and C. album in organic soil (soil organic matter > 80%) or when soil pH was above 7. Control of A. theophrasti and S. faberi decreased as soil organic matter content and soil pH increased. Similar results were observed when comparing lab-made soils to field soils; however, differences in control were observed between lab-made organic matter soils and field organic matter soils. Results indicate that flumioxazin can provide control ranging from 75–100% for two to six weeks on common weed species.