Spatial autocorrelation analysis and ecological niche modelling allows inference of range dynamics driving the population genetic structure of a Neotropical savanna tree

2015 ◽  
Vol 43 (1) ◽  
pp. 167-177 ◽  
Author(s):  
José Alexandre F. Diniz-Filho ◽  
Ana Clara O. F. Barbosa ◽  
Rosane G. Collevatti ◽  
Lázaro J. Chaves ◽  
Levi Carina Terribile ◽  
...  
2021 ◽  
Vol 8 ◽  
Author(s):  
Daniel Frikli Mokodongan ◽  
Hiroki Taninaka ◽  
La Sara ◽  
Taisei Kikuchi ◽  
Hideaki Yuasa ◽  
...  

Spatial autocorrelation analysis is a well-established technique for detecting spatial structures and patterns in ecology. However, compared to inter-population genetic structure, much less studies examined spatial genetic structure (SGS) within a population by means of spatial autocorrelation analysis. More SGS analysis that compares the robustness of genome-wide single nucleotide polymorphisms (SNPs) and traditional population genetic markers in detecting SGS, and direct comparison between the estimated dispersal range based on SGS and the larval dispersal range of corals directly surveyed in the field would be important. In this study, we examined the SGS of a reef-building coral species, Heliopora coerulea, in two different reefs (Shiraho and Akaishi) using genome-wide SNPs derived from Multiplexed inter-simple sequence repeat (ISSR) genotyping by sequencing (MIG-seq) analysis and nine microsatellite loci for comparison. Microsatellite data failed to reveal significant spatial patterns when using the same number of samples as MIG-seq, whereas MIG-seq analysis revealed significant spatial autocorrelation patterns up to 750 m in both Shiraho and Akaishi reefs based on the maximum significant distance method. However, detailed spatial genetic analysis using fine-scale distance classes (25–200 m) found an x-intercept of 255–392 m in Shiraho and that of 258–330 m in Akaishi reef. The latter results agreed well with a previously reported direct field observation of larval dispersal, indicating that the larvae of H. coerulea settled within a 350 m range in Shiraho reef within one generation. Overall, our results empirically demonstrate that the x-intercept of the spatial correlogram agrees well with the larval dispersal distance that is most frequently found in field observations, and they would be useful for deciding effective conservation management units for maintenance and/or recovery within an ecological time scale.


2012 ◽  
Vol 86 (2) ◽  
pp. 173-183 ◽  
Author(s):  
Mahnaz Shabani ◽  
Coralie Bertheau ◽  
Mehrshad Zeinalabedini ◽  
Alimorad Sarafrazi ◽  
Mohsen Mardi ◽  
...  

Author(s):  
Débora Maria Cavalcanti Ferreira ◽  
Clarisse Palma-Silva ◽  
Jordana Néri ◽  
Maria Cláudia Melo Pacheco de Medeiros ◽  
Diego Sotero Pinangé ◽  
...  

Abstract Morphological variations of individuals and populations of plants have hampered taxonomists from understanding whether such variations are intra- or interspecific. In this research, we study Cryptanthus burle-marxii and C. zonatus, the morphological variations of which overlap, making it difficult to identify them. Both taxa are restricted to the north of the Brazilian Atlantic Forest and are included in the C. zonatus species complex. We applied different methods such as morphological comparison, population genetics using ten nuclear microsatellite markers and ecological niche modelling to study population genetic structure and species delimitation of this species complex. Our analysis revealed that the two genetic clusters were formed possibly because of the presence of a historical geographical barrier in a region called ‘depressão do Abiaí’. The two genetic clusters were concordant with the northern and southern distribution of the complex but incongruent with a morphological variation or current taxonomic delimitation. Thus, we synonymize C. burle-marxii with C. zonatus and re-evaluate its conservation status as endangered.


2014 ◽  
Vol 12 (1) ◽  
pp. 65-70 ◽  
Author(s):  
Mariana Pires de Campos Telles ◽  
Ricardo Dobrovolski ◽  
Kelly da Silva e Souza ◽  
Jacqueline de Souza Lima ◽  
Rosane Garcia Collevatti ◽  
...  

2004 ◽  
Vol 82 (9) ◽  
pp. 1402-1408 ◽  
Author(s):  
Mi Yoon Chung ◽  
Myong Gi Chung

Multilocus, putative allozyme genotypes were mapped and sampled from two local populations of Quercus mongolica Fischer ex Turcz var. grosseserrata (Bl.) Rehder & Wilson (Fagaceae) (each area is 100 m × 100 m, one with Sasa cover (N = 62) versus a second without it (N = 384)) occurring in undisturbed forests near Nogodan, Mount Jiri in southern Korea. Ripley's L-statistics and spatial autocorrelation analysis (a coancestry coefficient, fij) were used to test the prediction that because of low seedling establishment in a population with dense Sasa cover, there would be no spatial aggregation or hyperdispersion of individual trees and little evidence of fine-scale genetic structure in the population. As predicted, the Sasa-covered population showed no evidence of significant aggregation of individuals (P < 0.01) up to an interplant distance of 50 m and a random distribution of putative genotypes in the population. By contrast, the L-statistics conducted in the Sasa-free population indicated significant aggregation of individuals at interplant distances extending from 4 to 50 m. Spatial autocorrelation analysis revealed small but significant (P < 0.01), positive, fine-scale genetic structure extending from 10 to 30 m. A very similar result was obtained from 100 replicates each consisting of 62 trees in the Sasa-free populations by applying rarefaction and bootstrapping. These findings support the hypothesis that ground vegetation such as Sasa spp. has an impact on fine-scale genetic structure. The weak spatial genetic structure found in the Sasa-free population may primarily be due to limited acorn dispersal coupled with overlapping seed shadows and (or) secondary acorn dispersal by rodents.Key words: allozymes, Fagaceae, ground cover, Quercus mongolica var. grosseserrata, Sasa spp., spatial genetic structure.


2012 ◽  
Vol 45 (1) ◽  
pp. 79-93 ◽  
Author(s):  
J. ROMÁN-BUSTO ◽  
M. TASSO ◽  
G. CARAVELLO ◽  
V. FUSTER ◽  
P. ZULUAGA

SummaryThe present analysis compares the distribution of surnames by means of spatial autocorrelation analysis in the Spain–Portugal border region. The Spanish National Institute of Statistics provides a database of surnames of residents in the western Spanish provinces of Zamora, Salamanca, Cáceres, Badajoz and Huelva. The Spanish and Portuguese patterns of surname distribution were established according to various geographic axes. The results obtained show a low diversity of surnames in this region – especially in the centre – which can be explained by the absence of any major geographic barriers, with the exception of the mountain ranges between hydrographic basins, and by the presence of traditional roads that have existed since Roman times. The latter have resulted in a constant migratory flow over short–median distances, which, as can be deduced from the surnames, fits two north/south territorial axes running parallel to the border between Spain and Portugal. The distribution patterns of Portuguese and Spanish surnames differ with regard to their frequencies in the five provinces studied, which can be attributed to their respective historical, economic and social conditions. It is concluded that the border delimiting these two countries has affected the migratory flow, thereby conditioning the demographic and genetic structure of the western Spanish regions.


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