scholarly journals Chromosome arm-specific patterns of polymorphism associated with chromosomal inversions in the major African malaria vector,Anopheles funestus

2017 ◽  
Vol 26 (20) ◽  
pp. 5552-5566 ◽  
Author(s):  
Colince Kamdem ◽  
Caroline Fouet ◽  
Bradley J. White

2010 ◽  
Vol 28 (1) ◽  
pp. 745-758 ◽  
Author(s):  
D. Ayala ◽  
M. C. Fontaine ◽  
A. Cohuet ◽  
D. Fontenille ◽  
R. Vitalis ◽  
...  


2016 ◽  
Author(s):  
Colince Kamdem ◽  
Caroline Fouet ◽  
Bradley J. White

AbstractChromosomal inversions facilitate local adaptation of beneficial mutations and modulate genetic polymorphism, but the extent of their effects within the genome is still insufficiently understood. The genome of Anopheles funestus, a malaria mosquito endemic to sub-Saharan Africa, contains an impressive number of paracentric polymorphic inversions, which are unevenly distributed among chromosomes and provide an excellent framework for investigating the genomic impacts of chromosomal rearrangements. Here we present results of a fine-scale analysis of genetic variation within the genome of two weakly differentiated populations of Anopheles funestus inhabiting contrasting moisture conditions in Cameroon. Using population genomic analyses, we found that genetic divergence between the two populations is centered on regions of the genome corresponding to three inversions, which are characterized by high values of FST, absolute sequence divergence and fixed differences. Importantly, in contrast to the 2L chromosome arm, which is collinear, nucleotide diversity is significantly reduced along the entire length of three autosome arms bearing multiple overlapping chromosomal rearrangements. These findings support the idea that interactions between reduced recombination and natural selection within inversions contribute to sculpt nucleotide polymorphism across chromosomes in An. funestus.





2012 ◽  
Vol 11 (1) ◽  
Author(s):  
Candice L Lyons ◽  
Maureen Coetzee ◽  
John S Terblanche ◽  
Steven L Chown


2016 ◽  
Vol 15 (1) ◽  
Author(s):  
Rousseau J. Djouaka ◽  
Seun M. Atoyebi ◽  
Genevieve M. Tchigossou ◽  
Jacob M. Riveron ◽  
Helen Irving ◽  
...  


GigaScience ◽  
2019 ◽  
Vol 8 (6) ◽  
Author(s):  
Jay Ghurye ◽  
Sergey Koren ◽  
Scott T Small ◽  
Seth Redmond ◽  
Paul Howell ◽  
...  


PLoS ONE ◽  
2019 ◽  
Vol 14 (3) ◽  
pp. e0213949 ◽  
Author(s):  
Ange Tchakounte ◽  
Magellan Tchouakui ◽  
Chiang Mu-Chun ◽  
Williams Tchapga ◽  
Edmond Kopia ◽  
...  


2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Magellan Tchouakui ◽  
Mu-Chun Chiang ◽  
Cyrille Ndo ◽  
Carine K. Kuicheu ◽  
Nathalie Amvongo-Adjia ◽  
...  


2000 ◽  
Vol 9 (4) ◽  
pp. 490-492 ◽  
Author(s):  
S. P. Sinkins ◽  
B. J. Hackett ◽  
C. Costantini ◽  
J. Vulule ◽  
Y-Y. Ling ◽  
...  


Genes ◽  
2020 ◽  
Vol 11 (2) ◽  
pp. 165 ◽  
Author(s):  
Anastasia N. Naumenko ◽  
Dmitriy A. Karagodin ◽  
Andrey A. Yurchenko ◽  
Anton V. Moskaev ◽  
Olga I. Martin ◽  
...  

Chromosomal inversions are important drivers of genome evolution. The Eurasian malaria vector Anopheles messeae has five polymorphic inversions. A cryptic species, An. daciae, has been discriminated from An. messeae based on five fixed nucleotide substitutions in the internal transcribed spacer 2 (ITS2) of ribosomal DNA. However, the inversion polymorphism in An. daciae and the genome divergence between these species remain unexplored. In this study, we sequenced the ITS2 region and analyzed the inversion frequencies of 289 Anopheles larvae specimens collected from three locations in the Moscow region. Five individual genomes for each of the two species were sequenced. We determined that An. messeae and An. daciae differ from each other by the frequency of polymorphic inversions. Inversion X1 was fixed in An. messeae but polymorphic in An. daciae populations. The genome sequence comparison demonstrated genome-wide divergence between the species, especially pronounced on the inversion-rich X chromosome (mean Fst = 0.331). The frequency of polymorphic autosomal inversions was higher in An. messeae than in An. daciae. We conclude that the X chromosome inversions play an important role in the genomic differentiation between the species. Our study determined that An. messeae and An. daciae are closely related species with incomplete reproductive isolation.



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