scholarly journals Genomic footprints of repeated evolution of CAM photosynthesis in a Neotropical species radiation

2020 ◽  
Vol 43 (12) ◽  
pp. 2987-3001
Author(s):  
Marylaure De La Harpe ◽  
Margot Paris ◽  
Jaqueline Hess ◽  
Michael Harald Johannes Barfuss ◽  
Martha Liliana Serrano‐Serrano ◽  
...  
Keyword(s):  
Species Radiation ◽  
Neotropical Species ◽  
Repeated Evolution ◽  
Cam Photosynthesis

Do Melastomataceae perform CAM photosynthesis? A survey of neotropical species using carbon isotope ratios

2013 ◽  
Vol 29 (3) ◽  
pp. 265-269
Author(s):  
Gilberto Ocampo ◽  
Frank Almeda
Keyword(s):  
Carbon Isotope ◽  
Carbon Isotope Ratio ◽  
Cam Plants ◽  
Anatomical Features ◽  
Neotropical Species ◽  
Photosynthetic Pathways ◽  
Biochemical Assays ◽  
California Academy ◽  
Academy Of Sciences ◽  
Cam Photosynthesis

Abstract:Leaf anatomical and carbon isotope ratio (δ13C) data from previous studies suggest that the species of the Melastomataceae perform C3 photosynthesis and that leaf anatomical features of some epiphytic taxa resemble the characteristics found in CAM plants. The δ13C values of 67 species of neotropical Melastomataceae (including epiphytes) were obtained from herbarium material deposited at the California Academy of Sciences for assessing the presence of the CAM pathway. The δ13C values obtained from leaves (−23.4‰ to −34.5‰) were congruent with C3 photosynthesis (< −20‰), and the δ13C data from terrestrial (56 samples) and epiphytic species (11 samples) were not statistically different. Our results suggest that CAM photosynthesis is not found in neotropical Melastomataceae. The leaf anatomical features found in some species of Melastomataceae represent adaptations to cope with water stress and are not necessarily correlated with CAM photosynthesis. Photosynthetic pathways can be assessed with the use of leaf anatomical and δ13C data, but further biochemical assays are warranted to corroborate the absence of the CAM pathway in the Melastomataceae.

scholarly journals Genomic footprints of repeated evolution of CAM photosynthesis in tillandsioid bromeliads

2018 ◽  
Author(s):  
Marylaure De La Harpe ◽  
Margot Paris ◽  
Jaqueline Hess ◽  
Michael H. J. Barfuss ◽  
Martha L. Serrano-Serrano ◽  
...  
Keyword(s):  
Gene Expression ◽  
Carbohydrate Metabolism ◽  
Adaptive Radiation ◽  
Sequence Evolution ◽  
Protein Coding ◽  
Gene Duplication And Loss ◽  
Repeated Evolution ◽  
Differential Gene ◽  
Pleiotropic Regulators ◽  
Cam Photosynthesis

The adaptive radiation of Bromeliaceae (pineapple family) is one of the most diverse among Neotropical flowering plants. Diversification in this group was facilitated by several ‘key innovations’ including the transition from C3 to CAM photosynthesis. We used a phylogenomic approach complemented by differential gene expression (RNA-seq) and targeted metabolite profiling to address the patterns and mechanisms of C3/CAM evolution in the extremely species-rich bromeliad genus Tillandsia and related taxa. Evolutionary analyses at a range of different levels (selection on protein-coding genes, gene duplication and loss, regulatory evolution) revealed three common themes driving the evolution of CAM: response to heat and drought, alterations to basic carbohydrate metabolism, and regulation of organic acid storage. At the level of genes and their products, CAM/C3 shifts were accompanied by gene expansion of a circadian regulator, re-programming of ABA-related gene expression, and adaptive sequence evolution of an enolase, effectively linking carbohydrate metabolism to ABA-mediated stress response. These changes include several pleiotropic regulators, which facilitated the evolution of correlated adaptive traits during a textbook adaptive radiation.

DIGGING IN: DIVERSITY, DISPARITY, AND THE REPEATED EVOLUTION OF THE BORING HABIT IN THE MARINE BIVALVIA

2018 ◽  
Author(s):  
Katie S. Collins ◽  
◽  
Stewart M. Edie ◽  
Tingran Gao ◽  
Rudiger Bieler ◽  
...  
Keyword(s):  
Repeated Evolution

scholarly journals Interpreting nature’s finest insect silks (Order Embioptera): hydropathy, interrupted repetitive motifs, and fiber-to-film transformation for two neotropical species

Zoology ◽  
2021 ◽  
pp. 125923
Author(s):  
J. René Harper ◽  
Neeraja Sripada ◽  
Pooja Kher ◽  
Justen B. Whittall ◽  
Janice S. Edgerly
Keyword(s):  
Neotropical Species

A new species of Pirhosigma Giordani Soika, 1978 (Hymenoptera, Vespidae: Eumeninae), with additional notes and a key to the species in the genus

Zootaxa ◽  
2017 ◽  
Vol 4300 (2) ◽  
pp. 269 ◽  
Author(s):  
WELLINGTON D. FERREIRA ◽  
LETÍCIA A. DE OLIVEIRA ◽  
TIAGO G. INEZ ◽  
MARCEL G. HERMES
Keyword(s):  
New Species ◽  
Identification Key ◽  
Neotropical Species ◽  
First Time ◽  
A New Species

A new Neotropical species of Pirhosigma Giordani Soika, 1978 is described, Pirhosigma transfluvium Ferreira & Oliveira. The male of Pirhosigma limpidum Giordani Soika, 1978 is reported for the first time. An illustrated identification key is presented for all currently recognized species of Pirhosigma. 

scholarly journals An evolutionary genomic approach reveals both conserved and species-specific genetic elements related to human disease in closely related Aspergillus fungi

Genetics ◽  
2021 ◽  
Author(s):  
Matthew E Mead ◽  
Jacob L Steenwyk ◽  
Lilian P Silva ◽  
Patrícia A de Castro ◽  
Nauman Saeed ◽  
...  
Keyword(s):  
Human Disease ◽  
Evolutionary Rate ◽  
Fungal Disease ◽  
Comparative Genomic ◽  
Genetic Elements ◽  
Genomic Approach ◽  
Evolutionary Genomic ◽  
Repeated Evolution ◽  
Species Specific ◽  
Encoding Genes

Abstract Aspergillosis is an important opportunistic human disease caused by filamentous fungi in the genus Aspergillus. Roughly 70% of infections are caused by Aspergillus fumigatus, with the rest stemming from approximately a dozen other Aspergillus species. Several of these pathogens are closely related to A. fumigatus and belong in the same taxonomic section, section Fumigati. Pathogenic species are frequently most closely related to non-pathogenic ones, suggesting Aspergillus pathogenicity evolved multiple times independently. To understand the repeated evolution of Aspergillus pathogenicity, we performed comparative genomic analyses on 18 strains from 13 species, including 8 species in section Fumigati, which aimed to identify genes, both ones previously connected to virulence as well as ones never before implicated, whose evolution differs between pathogens and non-pathogens. We found that most genes were present in all species, including approximately half of those previously connected to virulence, but a few genes were section- or species-specific. Evolutionary rate analyses identified over 1,700 genes whose evolutionary rate differed between pathogens and non-pathogens and dozens of genes whose rates differed between specific pathogens and the rest of the taxa. Functional testing of deletion mutants of 17 transcription factor-encoding genes whose evolution differed between pathogens and non-pathogens identified eight genes that affect either fungal survival in a model of phagocytic killing, host survival in an animal model of fungal disease, or both. These results suggest that the evolution of pathogenicity in Aspergillus involved both conserved and species-specific genetic elements, illustrating how an evolutionary genomic approach informs the study of fungal disease.

scholarly journals Global patterns in genomic diversity underpinning the evolution of insecticide resistance in the aphid crop pest Myzus persicae

2021 ◽  
Vol 4 (1) ◽  
Author(s):  
Kumar Saurabh Singh ◽  
Erick M. G. Cordeiro ◽  
Bartlomiej J. Troczka ◽  
Adam Pym ◽  
Joanna Mackisack ◽  
...  
Keyword(s):  
Host Plant ◽  
Myzus Persicae ◽  
Resistance Mechanisms ◽  
Genomic Diversity ◽  
Resistance Mutations ◽  
Host Plant Adaptation ◽  
Repeated Evolution ◽  
Evolution Of Resistance ◽  
Selective Forces ◽  
Clonal Lines

AbstractThe aphid Myzus persicae is a destructive agricultural pest that displays an exceptional ability to develop resistance to both natural and synthetic insecticides. To investigate the evolution of resistance in this species we generated a chromosome-scale genome assembly and living panel of >110 fully sequenced globally sampled clonal lines. Our analyses reveal a remarkable diversity of resistance mutations segregating in global populations of M. persicae. We show that the emergence and spread of these mechanisms is influenced by host–plant associations, uncovering the widespread co‐option of a host-plant adaptation that also offers resistance against synthetic insecticides. We identify both the repeated evolution of independent resistance mutations at the same locus, and multiple instances of the evolution of novel resistance mechanisms against key insecticides. Our findings provide fundamental insights into the genomic responses of global insect populations to strong selective forces, and hold practical relevance for the control of pests and parasites.

scholarly journals Variation in pleiotropic hub gene expression is associated with interspecific differences in head shape and eye size in Drosophila

2021 ◽  
Author(s):  
Elisa Buchberger ◽  
Anıl Bilen ◽  
Sanem Ayaz ◽  
David Salamanca ◽  
Cristina Matas de las Heras ◽  
...  
Keyword(s):  
Natural Variation ◽  
Compound Eye ◽  
Genetic Manipulation ◽  
Morphological Evolution ◽  
Morphological Diversity ◽  
Network Evolution ◽  
Head Shape ◽  
Eye Size ◽  
Recurrent Mutations ◽  
Repeated Evolution

Abstract Revealing the mechanisms underlying the breath-taking morphological diversity observed in nature is a major challenge in Biology. It has been established that recurrent mutations in hotspot genes cause the repeated evolution of morphological traits, such as body pigmentation or the gain and loss of structures. To date, however, it remains elusive whether hotspot genes contribute to natural variation in the size and shape of organs. Since natural variation in head morphology is pervasive in Drosophila, we studied the molecular and developmental basis of differences in compound eye size and head shape in two closely related Drosophila species. We show differences in the progression of retinal differentiation between species and we applied comparative transcriptomics and chromatin accessibility data to identify the GATA transcription factor Pannier (Pnr) as central factor associated with these differences. Although the genetic manipulation of Pnr affected multiple aspects of dorsal head development, the effect of natural variation is restricted to a subset of the phenotypic space. We present data suggesting that this developmental constraint is caused by the co-evolution of expression of pnr and its co-factor u-shaped (ush). We propose that natural variation in expression or function of highly connected developmental regulators with pleiotropic functions is a major driver for morphological evolution and we discuss implications on gene regulatory network evolution. In comparison to previous findings, our data strongly suggests that evolutionary hotspots are not the only contributors to the repeated evolution of eye size and head shape in Drosophila.

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