Multiplex Single Molecule Detection Module for Stroke Diagnosis

2013 ◽  
Author(s):  
D. S. Park ◽  
B. B. Lowrey ◽  
C. R. Brown ◽  
B. H. You ◽  
V. Singh ◽  
...  
Keyword(s):  
Single Molecule ◽  
Fluorescent Dyes ◽  
Signal To Noise Ratio ◽  
Low Cost ◽  
Single Step ◽  
Single Molecule Detection ◽  
Rapid Screening ◽  
Cover Plate ◽  
Sampling Efficiency ◽  
Sampling Zone

A polymer-based, multiplex single molecule detection module (SMD) was developed with a fluidic substrate and a cover plate. The fluidic substrate was fabricated using a single-step, double-sided hot embossing in poly(methyl methacrylate) (PMMA) with sampling zone microchannels on the bottom side and microlenses on the top. Shallow sampling zone microchannels (5 μm deep and 100 μm wide) were made to improve sampling efficiency and microlenses were adopted to collect the fluorescent radiation from the sampling zone microchannels. A cyclic olefin copolymer (COC) embedded waveguide in PMMA along with an integrated coupling prism was fabricated using polydimethylsiloxane (PDMS) stencils and melted COC (40% w/v in toluene) on the cover plate. The COC waveguide with a COC integrated coupling prism will be used for evanescent excitation of fluorescent samples in the sampling zone microchannels. The fluidic substrate was bonded with the cover plate using thermal fusion bonding based on a pressure-assisted boiling point control system. This approach allowed for sealing of shallow microchannels without observable sagging of the cover plate, which was confirmed by leakage testing with fluorescent dyes. The completed SMD module will be tested for characterization of the optical performances such as signal-to-noise ratio and sampling efficiency and it will provide the capability for rapid screening of stroke at low cost.

scholarly journals Comparing current noise in biological and solid-state nanopores

2019 ◽  
Author(s):  
A. Fragasso ◽  
S. Schmid ◽  
C. Dekker
Keyword(s):  
Solid State ◽  
Single Molecule ◽  
Signal To Noise Ratio ◽  
Low Cost ◽  
Ionic Current ◽  
Low Noise ◽  
Signal To Noise ◽  
Experimental Conditions ◽  
High Frequencies ◽  
Noise Ratio

AbstractNanopores bear great potential as single-molecule tools for bioanalytical sensing and sequencing, due to their exceptional sensing capabilities, high-throughput, and low cost. The detection principle relies on detecting small differences in the ionic current as biomolecules traverse the nanopore. A major bottleneck for the further progress of this technology is the noise that is present in the ionic current recordings, because it limits the signal-to-noise ratio and thereby the effective time resolution of the experiment. Here, we review the main types of noise at low and high frequencies and discuss the underlying physics. Moreover, we compare biological and solid-state nanopores in terms of the signal-to-noise ratio (SNR), the important figure of merit, by measuring free translocations of a short ssDNA through a selected set of nanopores under typical experimental conditions. We find that SiNx solid-state nanopores provide the highest SNR, due to the large currents at which they can be operated and the relatively low noise at high frequencies. However, the real game-changer for many applications is a controlled slowdown of the translocation speed, which for MspA was shown to increase the SNR >160-fold. Finally, we discuss practical approaches for lowering the noise for optimal experimental performance and further development of the nanopore technology.

Photobleaching of Fluorescent Dyes under Conditions Used for Single-Molecule Detection:  Evidence of Two-Step Photolysis

1998 ◽  
Vol 70 (13) ◽  
pp. 2651-2659 ◽  
Author(s):  
C. Eggeling ◽  
J. Widengren ◽  
R. Rigler ◽  
C. A. M. Seidel
Keyword(s):  
Single Molecule ◽  
Fluorescent Dyes ◽  
Single Molecule Detection

scholarly journals Efficient Estimation of CFO-Affected OFDM BER Floor in Small Cells with Resource-Limited IoT End-Points

Sensors ◽  
2020 ◽  
Vol 20 (13) ◽  
pp. 3747
Author(s):  
Adriana Lipovac ◽  
Vlatko Lipovac ◽  
Borivoj Modlic
Keyword(s):  
Orthogonal Frequency Division Multiplexing ◽  
Carrier Frequency Offset ◽  
Signal To Noise Ratio ◽  
Low Cost ◽  
Error Recovery ◽  
Efficient Estimation ◽  
Analytical Models ◽  
Small Cells ◽  
End Points ◽  
Power Delay Profile

Contemporary wireless networks dramatically enhance data rates and latency to become a key enabler of massive communication among various low-cost devices of limited computational power, standardized by the Long-Term Evolution (LTE) downscaled derivations LTE-M or narrowband Internet of Things (NB IoT), in particular. Specifically, assessment of the physical-layer transmission performance is important for higher-layer protocols determining the extent of the potential error recovery escalation upwards the protocol stack. Thereby, it is needed that the end-points of low processing capacity most efficiently estimate the residual bit error rate (BER) solely determined by the main orthogonal frequency-division multiplexing (OFDM) impairment–carrier frequency offset (CFO), specifically in small cells, where the signal-to-noise ratio is large enough, as well as the OFDM symbol cyclic prefix, preventing inter-symbol interference. However, in contrast to earlier analytical models with computationally demanding estimation of BER from the phase deviation caused by CFO, in this paper, after identifying the optimal sample instant in a power delay profile, we abstract the CFO by equivalent time dispersion (i.e., by additional spreading of the power delay profile that would produce the same BER degradation as the CFO). The proposed BER estimation is verified by means of the industry-standard LTE software simulator.

scholarly journals A controlled T7 transcription-driven symmetric amplification cascade machinery for single-molecule detection of multiple repair glycosylases

2021 ◽  
Author(s):  
Li-juan Wang ◽  
Le Liang ◽  
Bing-jie Liu ◽  
BingHua Jiang ◽  
Chun-yang Zhang
Keyword(s):  
Single Molecule ◽  
Single Molecule Detection ◽  
Amplification Cascade

A controlled T7 transcription-driven symmetric amplification cascade machinery is developed for single-molecule detection of multiple repair glycosylases.

Highly Sensitive Detection of Paraquat with Pillar[5]arene as an aptamer in α-Hemolysin Nanopore

2021 ◽  
Author(s):  
Xiaojia Jiang ◽  
Mingsong Zang ◽  
Fei Li ◽  
Chunxi Hou ◽  
Quan Luo ◽  
...  
Keyword(s):  
Real Time ◽  
High Throughput ◽  
Single Molecule ◽  
Single Molecule Detection ◽  
Sensitive Detection ◽  
High Throughput Analysis ◽  
Throughput Analysis ◽  
The Real ◽  
Highly Sensitive ◽  
Highly Sensitive Detection

Biological nanopore-based techniques have attracted more and more attention recently in the field of single-molecule detection, because they allow the real-time, sensitive, high-throughput analysis. Herein, we report an engineered biological...

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