Morphological descriptions and DNA barcodes of Oziella viscida n. sp. (Eriophyoidea, Phytoptidae) and two infrequently reported Trisetacus species (Nalepellidae) from Crimea

2021 ◽  
Author(s):  
Philipp E. Chetverikov ◽  
Denis S. Fedorov ◽  
Anna E. Romanovich ◽  
Jacqueline V. Sarratt
Keyword(s):  
Phylogenetic Analyses ◽  
Pinus Nigra ◽  
Mite Species ◽  
Dna Barcodes ◽  
Gene Sequences ◽  
Prodorsal Shield ◽  
Viscous Material ◽  
Pinus Brutia ◽  
Blast Search ◽  
Juncus Maritimus

We report on a new phytoptid mite species, Oziella viscida n. sp., collected in Western Crimea from sea rush, Juncus maritimus (Juncaceae), and give supplementary descriptions of two rarely encountered nalepellid species of the genus Trisetacus from pines: T. confusus Livshits & Vasilieva, 1982 (in Vasilieva et al. 1982) from needle sheaths of Pinus nigra ssp. pallasiana (Pinaceae), an endemic subspecies restricted to Crimea, and T. brevisetus Livshits & Sekerskaya, 1982 (in Vasilieva et al. 1982) from needle sheaths of Pinus brutia ssp. pityusa (Steven) Silba, a relatively isolated subspecies of Turkish pine (P. brutia Tenore) growing in Georgia, Caucasus and Crimea. Oziella viscida n. sp. is remarkable in that most specimens were found inhabiting the basal part of leaves and stems of J. maritimus, an area covered by a transparent, sticky exudate apparently secreted by the plant epidermis. The mites were completely embedded in this substance and, rather than crawling with their legs, were observed moving through the viscous material while bending their opisthosoma in a serpentine or wormlike manner—an adaptation that appears to be currently unreported in eriophyoids and possibly reminiscent of locomotion of ancestral “protoeriophyoids” associated with soil. In comparison to females, males of O. viscida n. sp. and T. confusus have a more distinct prodorsal shield pattern consisting of a larger number of longer lines. Three new barcode gene sequences were obtained: MZ220550 (Cox1, O. viscida n. sp., 1159 bp), MZ224497 (18S, 2012 bp, T. brevisetus), and MZ224498 (18S, 2013 bp T. confusus). A BLAST search of the 18S sequences of T. brevisetus and T. confusus shows them as slightly closer to other 18S sequences of Trisetacus from Pinaceae (95.5%–96.3% identity) than to Trisetacus from Cupressaceae (93.6%–94.0% identity). Comparison of sequences of nalepellids currently present in GenBank suggest that a complete 18S sequence KJ841938.1 (2252 bp) from China belongs to an identified Trisetacus from Pinaceae rather than to Setoptus koraiensis as labelled, highlighting the necessity to review carefully the sequences of Eriophyoidea prior to using them in phylogenetic analyses, as well as the need to recollect and resequence S. koraiensis to clarify the nature of the problematic data from GenBank assigned to this species.  

The description and molecular phylogenetic position of a new conifer-associated mite, Setoptus tsugivagus n. sp. (Eriophyoidea, Phytoptidae, Nalepellinae)

2019 ◽  
Vol 24 (4) ◽  
pp. 683
Author(s):  
Philipp Chetverikov ◽  
Eugenia A. Desnitskaya ◽  
Peter G. Efimov ◽  
Samuel Bolton ◽  
Tatjana Cvrkovic ◽  
...  
Keyword(s):  
Phylogenetic Analyses ◽  
Mite Species ◽  
Tsuga Heterophylla ◽  
Distinct Pattern ◽  
28S Rdna ◽  
Phylogenetic Position ◽  
Prodorsal Shield ◽  
Rdna Sequences ◽  
Molecular Phylogenetic ◽  
28S Rdna Sequences

A new vagrant eriophyoid mite species, Setoptus tsugivagus n. sp. Chetverikov (Eriophyoidea, Phytoptidae, Nalepellinae, Nalepellini), is described from the needles of the western hemlock, Tsuga heterophylla (Rafinesque) Sargent (Pinaceae) in Vancouver, Canada. The new species can be distinguished from all other members of Setoptus by a distinct pattern of several short longitudinal ridges on the posterior half of the prodorsal shield. Elements of the anal secretory apparatus (ASA) were observed in adults of S. tsugivagus n. sp., suggesting that the ASA is present in both major phylogenetic lineages of Eriophyoidea (Eriophyidae s. l. and Phytoptidae s. l.). Therefore, this structure could be a synapomorphy for all Eriophyoidea. We briefly discuss the function and morphological variety of the ASA in Eriophyoidea. D2 28S rDNA sequences of four nalepelline species were obtained: Boczekella reticulata Bagnyuk 1987 (GenBank accession number MK124605), Nalepella tsugifoliae Keifer 1953 (MK124606), Setoptus pini Boczek, 1964 (MK124607), and S. tsugivagus n. sp. (MK124608). Molecular phylogenetic analyses of D2 28S rDNA sequences of the mites of the subfamily Nalepellinae confirmed monophyly of the tribe Nalepellini and retrieved Setoptus and Nalepella as polyphyletic. Additionally, our data indicate that 28S rDNA sequence KF782472.1, previously reported to be Trisetacus ehmanni Keifer 1963 by Li et al. (2014), belongs to another species of the genus Trisetacus, possibly T. quadrisetus (Thomas), and the sequence KF782471.1, previously reported to be Trisetacus sp., might belong to T. juniperinus (Nalepa). We also discuss the systematics of nalepellines and their host association with conifers.

scholarly journals Associations of Phoretic Mites on Bark Beetles of the Genus Ips in the Black Sea Mountains of Turkey

Forests ◽  
2021 ◽  
Vol 12 (5) ◽  
pp. 516
Author(s):  
Cihan Cilbircioğlu ◽  
Marta Kovač ◽  
Milan Pernek
Keyword(s):  
Black Sea ◽  
Bark Beetles ◽  
Pinus Nigra ◽  
Mite Species ◽  
Tree Bark ◽  
The Black Sea ◽  
Forest Pests ◽  
Larval Stages ◽  
Suitable Habitats ◽  
First Time

Phoretic mites use bark beetles for transportation to new, suitable habitats. Some phoretic mites act as predators and parasitoids of the bark beetles’ immature stages, especially egg and early larval stages, and are potential agents for the biological control of scolytine forest pests. Mites live very frequently in relationships with other invertebrates. Many are found in association with various species of bark beetles. Here, a total of 41 specimens of different bark beetles of the genus Ips (Ips acuminatus, Ips sexdentatus and Ips typographus) were studied for presence, species composition, and abundance of phoretic mites. The beetles were collected on dead wood and parts of tree bark of Pinus nigra, Pinus sylvestris and Picea abies in the Black Sea Mountains in Kastamonu and Artin Province of Turkey. A total of nine mite species were found, including Dendrolaelaps quadrisetus, Ereynetes sp., Histiostoma piceae, Paraleius cf. leontonychus, Pleuronectocelaeno barbara., Proctolaelaps hystricoides, Schizostethus simulatrix, Trichouropoda lamellosa and Uroobovellaipidis. All species are identified for the first time within Turkish fauna.

Phylogenetic analyses of some genera in Oedipodidae (Orthoptera: Acridoidea) based on 16S mitochondrial partial gene sequences

2008 ◽  
Vol 15 (5) ◽  
pp. 471-476 ◽  
Author(s):  
Xiang-Chu Yin ◽  
Xin-Jiang Li ◽  
Wen-Qiang Wang ◽  
Hong Yin ◽  
Cheng-Quan Cao ◽  
...  
Keyword(s):  
Phylogenetic Analyses ◽  
Gene Sequences

Comparative Phylogenetic Analyses of Halomonas variabilis and Related Organisms Based on 16S rRNA, gyrB and ectBC Gene Sequences

2004 ◽  
Vol 27 (3) ◽  
pp. 323-333 ◽  
Author(s):  
Takuji Okamoto ◽  
Akihiko Maruyama ◽  
Satoshi Imura ◽  
Haruko Takeyama ◽  
Takeshi Naganuma
Keyword(s):  
16S Rrna ◽  
Phylogenetic Analyses ◽  
Gene Sequences

Sediminihaliea albiluteola gen. nov., sp. nov., a new member of the family Halieaceae, isolated from marine sediment

2021 ◽  
Vol 71 (8) ◽  
Author(s):  
Shan Jiang ◽  
Feng-Bai Lian ◽  
You-Yang Sun ◽  
Xiao-Kui Zhang ◽  
Zong-Jun Du
Keyword(s):  
Type Species ◽  
Phylogenetic Analyses ◽  
Rrna Gene ◽  
Gene Sequences ◽  
Unidentified Phospholipid ◽  
Respiratory Quinone ◽  
Content Type ◽  
Link Type ◽  
The Family ◽  
Sequence Similarities

A Gram-stain-negative, rod-shaped and facultatively aerobic bacterial strain, designated F7430T, was isolated from coastal sediment collected at Jingzi Wharf in Weihai, PR China. Cells of strain F7430T were 0.3–0.4 µm wide, 2.0–2.6 µm long, non-flagellated, non-motile and formed pale-beige colonies. Growth was observed at 4–40 °C (optimum, 30 °C), pH 6.0–9.0 (optimum, pH 7.5–8.0) and at NaCl concentrations of 1.0–10.0 % (w/v; optimum, 1.0 %). The sole respiratory quinone of strain F7430T was ubiquinone 8 and the predominant cellular fatty acids were summed feature 8 (C18 : 1  ω7c / C18 : 1  ω6c; 60.7 %), summed feature 3 (C16 : 1  ω7c/C16 : 1  ω6c; 30.2 %) and C15 : 0 iso (13.9 %). The polar lipids of strain F7430T consisted of diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, phosphatidylcholine, one unidentified phospholipid and three unidentified lipids. Results of 16S rRNA gene sequences analyses indicated that this strain belonged to the family Halieaceae and had high sequence similarities to Parahaliea aestuarii JCM 51547T (95.3 %) and Halioglobus pacificus DSM 27932T (95.2 %) followed by 92.9–95.0 % sequence similarities to other type species within the aforementioned family. The rpoB gene sequences analyses indicated that the novel strain had the highest sequence similarities to Parahaliea aestuarii JCM 51547T (82.2 %) and Parahaliea mediterranea DSM 21924T (82.2 %) followed by 75.2–80.5 % sequence similarities to other type species within this family. Phylogenetic analyses showed that strain F7430T constituted a monophyletic branch clearly separated from the other genera of family Halieaceae . Whole-genome sequencing of strain F7430T revealed a 3.3 Mbp genome size with a DNA G+C content of 52.6 mol%. The genome encoded diverse metabolic pathways including the Entner–Doudoroff pathway, assimilatory sulphate reduction and biosynthesis of dTDP-l-rhamnose. Based on results from the current polyphasic study, strain F7430T is proposed to represent a novel species of a new genus within the family Halieaceae , for which the name Sediminihaliea albiluteola gen. nov., sp. nov. is proposed. The type strain of the type species is F7430T (=KCTC 72873T=MCCC 1H00420T).

A description of the second species of the genus Bleptus Eaton, 1885 (Ephemeroptera: Heptageniidae) from Japan, and phylogenetic relationships of two Bleptus mayflies inferred from mitochondrial and nuclear gene sequences

Zootaxa ◽  
2021 ◽  
Vol 4974 (2) ◽  
pp. 333-360
Author(s):  
KOJI TOJO ◽  
KEN MIYAIRI ◽  
YUTO KATO ◽  
AYANA SAKANO ◽  
TOMOYA SUZUKI
Keyword(s):  
Phylogenetic Analyses ◽  
Ribosomal Subunit ◽  
Nuclear Gene ◽  
Taxonomic Status ◽  
16S Rrna Genes ◽  
Rrna Genes ◽  
Gene Sequences ◽  
Molecular Phylogenetic ◽  
Black Band ◽  
Relationship Of

A new mayfly species, Bleptus michinokuensis sp. nov. (Ephemeroptera: Heptageniidae) is described on the basis of specimens of male and female adults and mature nymphs collected at a seepage zone of a small freshwater branch of the ‘Tachiya-zawa-gawa’ River located amongst the northern foothills of Mt. Gassan (Shonai-machi Town, Yamagata Prefecture, Japan). This new Bleptus species is characterized by its clear fore and hind wings. That is, they neither exhibit the distinct black band on the fore wings, nor the characteristic darkened margins along the edges of both the fore and hind wings. Rather it has a blackish colored terminal half of its fore legs (i.e., tibial, tarsal and pretarsal segments). These features differ clearly when comparing them to the other known species, Bleptus fasciatus Eaton. The information and data describing the habitat and distribution range of this new species are also noted. We also examined and discussed the genetic relationship of two Bleptus mayflies to settle the taxonomic status, inferred from the partially sequenced cytochrome c oxidase subunit I (COI) and large mitochondrial ribosomal subunit (16S rRNA) genes, and also the nuclear internal transcribed spacer 2 (ITS2) gene sequences. Consequently, phenetic and molecular phylogenetic analyses agreed well in terms of clustering. 

scholarly journals Myxobolus marajoensis sp. n. (Myxosporea: Myxobolidae), parasite of the freshwater catfish Rhamdia quelen from the Brazilian Amazon region

2017 ◽  
Vol 26 (4) ◽  
pp. 465-471 ◽  
Author(s):  
Jacqueline Abrunhosa ◽  
José Ledamir Sindeaux-Neto ◽  
Ândrea Kely dos Santos ◽  
Igor Hamoy ◽  
Edilson Matos
Keyword(s):  
New Species ◽  
18S Rdna ◽  
Phylogenetic Analyses ◽  
Muscle Layer ◽  
Gene Sequences ◽  
Fishery Resource ◽  
Rdna Gene ◽  
Brazilian Amazon Region ◽  
Rhamdia Quelen ◽  
18S Rdna Gene

Abstract This study provides morphological and molecular data of a new parasite species found in the muscle layer of the intestinal tract of the South American silver catfish, Rhamdia quelen from Marajó Island region (Pará State, Brazil), an important fishery resource with recognized potential for fish farming. The morphology of these parasites was reanalyzed and phylogenetic analyses were run on their 18S rDNA gene sequences. The spores were morphologically distinct from those of other Myxobolus species described previously. The obtained partial sequence of the 18S rDNA gene sequences of the new species were compared to those of 24 other Myxobolus and Henneguya species available in GenBank. The results of morphological and molecular analyses indicated clearly the existence of a new species, Myxobolus marajoensis sp. n.

scholarly journals Associations of Phoretic Mites on Bark Beetles of the Genus Ips in the Black Sea Mountains of Turkey

2021 ◽  
Author(s):  
Cihan Cilbircioğlu ◽  
Marta Matek Kovač ◽  
Milan Pernek
Keyword(s):  
Black Sea ◽  
Bark Beetles ◽  
Pinus Nigra ◽  
Mite Species ◽  
Tree Bark ◽  
The Black Sea ◽  
Forest Pests ◽  
Larval Stages ◽  
Suitable Habitats ◽  
First Time

Phoretic mites use bark beetles for transportation to new, suitable habitats. Some phoretic mites act as predators and parasitoids of the bark beetles’ immature stages, especially egg and early larval stages, and are potential agents for the biological control of scolytine forest pests. One of the most numerous and largest mite orders is Mesostigmata which live very frequently in relationships with other invertebrates. Many are found in association with various species of bark beetles. Here, a total of 41 specimens of different bark beetles of the genus Ips (I. acuminatus, I. sexdentatus and I. typographus) were studied for presence, species composition, and abundance of phoretic mites. The beetles were collected on dead wood and parts of tree bark of Pinus nigra, P. slyvestris and Picea abies in the Black Sea Mountains in Kastamonu and Artin Province of Turkey. A total of 9 mite species in 2 genera were found, including Dendrolaelaps quadrisetus, Ereynetes sp., Histiostoma piceae, Paraleius cf. leontonychus, Pleuronectocaeleno barbara., Proctolaelaps hystricoides, Schizostethus simulatrix, Trichouropoda lamellosa and Urobovella ipidis. All species and genera are identified for the first time within Turkish fauna.

First pentasetacid mite from Australasian Araucariaceae: morphological description and molecular phylogenetic position of Pentasetacus novozelandicus n. sp. (Eriophyoidea, Pentasetacidae) and remarks on anal lobes in eriophyoid mites

2019 ◽  
Vol 24 (7) ◽  
pp. 1284-1309 ◽  
Author(s):  
Philipp Chetverikov ◽  
C. CRAEMER C. CRAEMER ◽  
T. CVRKOVIĆ T. CVRKOVIĆ ◽  
P.G. EFIMOV P.G. EFIMOV ◽  
P.B. KLIMOV P.B. KLIMOV ◽  
...  
Keyword(s):  
Laser Scanning ◽  
Phylogenetic Analyses ◽  
Mite Species ◽  
Laser Scanning Microscopy ◽  
Coi Gene ◽  
Confocal Laser ◽  
Phylogenetic Position ◽  
Morphological Description ◽  
Eriophyoid Mites ◽  
Molecular Phylogenetic

A new vagrant eriophyoid mite species of the archaic genus Pentasetacus (Schliesske 1985), P. novozelandicus n. sp., is described with the aid of conventional microscopy, confocal laser scanning microscopy and scanning electron microscopy. It was found on Araucaria heterophylla, which is an araucarian that is endemic to Norfolk Island and introduced to New Zealand. Partial sequences of mitochondrial barcode COI gene and D1–D2 domains of nuclear rDNA of two pentasetacid mites, P. araucariae (MK903025 and MK898944) and P. novozelandicus n. sp. (MK903024 and MK898943) are provided. Molecular phylogenetic analyses of full-length D1–D2 eriophyoid sequences, including GenBank sequences and newly generated sequences of pentasetacids, confirmed the monophyly of Pentasetacidae but failed to resolve the basal phylogeny of Eriophyoidea. This may be because the D1–D2 domains of 28S are hypervariable in Eriophyoidea. Moreover, in pentasetacids D1–D2 sequences are about 20% shorter than in other eriophyoids, and thus harder to align. Two types of anal lobes are described in Eriophyoidea: (1) Eriophyidae s.l. and Phytoptidae s.l. have bilaterally symmetric lobes; (2) pentasetacids have non-divided lobes. The presence of an anal secretory apparatus, comprising internal structures that have previously been described in Eriophyidae s.l. and Phytoptidae s.l., is confirmed in pentasetacid genera. The phylogeny of pentasetacids is also discussed in the context of the paleobiography of Araucariaceae.

Two new phyllocoptine species and new records of eriophyoid mites (Eriophyidae, Phyllocoptinae) from Crimea, with evaluation of the phylogenetic position of the new taxa using GenBank data

2019 ◽  
Vol 24 (5) ◽  
pp. 882
Author(s):  
Philipp Chetverikov ◽  
Pavel Klimov ◽  
Viktoria Yu. Letukhova ◽  
Géza Ripka ◽  
Sarah Zukoff
Keyword(s):  
New Species ◽  
Phylogenetic Analyses ◽  
Mite Species ◽  
New Combination ◽  
Phylogenetic Position ◽  
Endemic Plant ◽  
Plant Host ◽  
Mitochondrial Coi ◽  
Rdna Sequences ◽  
Eriophyoid Mites

We describe two new species and report new occurrences for six species of eriophyid mites (Eriophyoidea: Eriophyidae) in Crimea: Abacarus denticulifer n. sp. from Agropyron cristatum (L.) Gaertn. (Poaceae), Aceria aculiformis Sukhareva 1986 from Melica ciliata L. (Poaceae), Aceria peucedani (Canestrini 1891) from Seseli tortuosum L. (Apiaceae), Anthocoptes recki (Bagdasarian 1972) n. comb. (from Tegonotus) from Pistacia atlantica subsp. mutica (Fisch. & C.A. Mey.) (Anacardiaceae), Epitrimerus inulae Farkas 1963 from Inula germanica L. (Asteraceae), Phyllocoptes sanctus n. sp. from Potentilla recta subsp. obscura (Willd.) (Rosaceae), Phyllocoptes bilobospinosus Chetverikov 2019 (in Chetverikov et al. 2019) from Tamarix spp. (Tamaricaceae), Tegoprionus dentatus (Nalepa 1891) from Galium verum L. (Rubiaceae). For an Indian phyllocoptine mite species associated with Apluda mutica L. (Poaceae), a new combination was proposed: Abacarus muticus (Sur & Chakrabarti 2017) n. comb. (from Mesalox). Mitochondrial COI and D2 28S rDNA sequences of three phyllocoptine species from Crimea were obtained: A. denticulifer n. sp. (GenBank accession numbers MK415989 and MK408623), P. bilobospinosus (MK408624), and P. sanctus n. sp. (MK415988 and MK408622). Comparison of all COI and D2 28S sequences of Eriophyoidea from GenBank showed that sequences JF920111 and JF920110 Aceria tulipae are identical to JF920101 Aceria tosichella, and D2 28S sequence KP297379 Tegolophus sp. is identical to KM111079 Shevtchenkella sp., which indicates either one or more misidentifications or sample contamination. Molecular phylogenetic analyses (a) confirmed the morphology-based assignment of A. denticulifer n. sp. to the Abacarus hystrix s.l. species complex, (b) supported the monophyly of Abacarus hystrix s.l., (c) revealed that the genera Phyllocoptes, Epitrimerus, and Calepitrimerus are paraphyletic, and (d) indicated that Phyllocoptini (including P. sanctus n. sp.), which are associated with Rosaceae and Caprifoliaceae, are monophyletic. The position of P. bilobospinosus was uncertain in all analyses. Based on the results of our study, it is recommended that descriptions of new species in large, putatively paraphyletic genera of Eriophyoidea include comparisons with mite species associated with the same plant family. Our work also provides new evidence that a species in a large complex of cryptic species could have evolved a distinct morphology if it is associated with an endemic plant host restricted to a geographically isolated area.

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