scholarly journals Depth-Related Changes in Community Structure of Culturable Mineral Weathering Bacteria and in Weathering Patterns Caused by Them along Two Contrasting Soil Profiles

2013 ◽  
Vol 80 (1) ◽  
pp. 29-42 ◽  
Author(s):  
Jing Huang ◽  
Xia-Fang Sheng ◽  
Jun Xi ◽  
Lin-Yan He ◽  
Zhi Huang ◽  
...  
Keyword(s):  
Population Structure ◽  
Community Structure ◽  
Culture Media ◽  
Soil Formation ◽  
Mineral Weathering ◽  
Soil Profiles ◽  
Community Structures ◽  
Highly Effective ◽  
Bacterial Groups ◽  
Weathering Process

ABSTRACTBacteria play important roles in mineral weathering and soil formation. However, few reports of mineral weathering bacteria inhabiting subsurfaces of soil profiles have been published, raising the question of whether the subsurface weathering bacteria are fundamentally distinct from those in surface communities. To address this question, we isolated and characterized mineral weathering bacteria from two contrasting soil profiles with respect to their role in the weathering pattern evolution, their place in the community structure, and their depth-related changes in these two soil profiles. The effectiveness and pattern of bacterial mineral weathering were different in the two profiles and among the horizons within the respective profiles. The abundance of highly effective mineral weathering bacteria in the Changshu profile was significantly greater in the deepest horizon than in the upper horizons, whereas in the Yanting profile it was significantly greater in the upper horizons than in the deeper horizons. Most of the mineral weathering bacteria from the upper horizons of the Changshu profile and from the deeper horizons of the Yanting profile significantly acidified the culture media in the mineral weathering process. The proportion of siderophore-producing bacteria in the Changshu profile was similar in all horizons except in the Bg2 horizon, whereas the proportion of siderophore-producing bacteria in the Yanting profile was higher in the upper horizons than in the deeper horizons. Both profiles existed in different highly depth-specific culturable mineral weathering community structures. The depth-related changes in culturable weathering communities were primarily attributable to minor bacterial groups rather than to a change in the major population structure.

scholarly journals Living Lithic and Sublithic Bacterial Communities in Namibian Drylands

2021 ◽  
Vol 9 (2) ◽  
pp. 235
Author(s):  
Steffi Genderjahn ◽  
Simon Lewin ◽  
Fabian Horn ◽  
Anja M. Schleicher ◽  
Kai Mangelsdorf ◽  
...  
Keyword(s):  
Community Structure ◽  
Microbial Communities ◽  
Soil Formation ◽  
Amplicon Sequencing ◽  
Mineral Weathering ◽  
Rrna Gene ◽  
Rock Weathering ◽  
Weathering Processes ◽  
Rock Types ◽  
Culture Independent

Dryland xeric conditions exert a deterministic effect on microbial communities, forcing life into refuge niches. Deposited rocks can form a lithic niche for microorganisms in desert regions. Mineral weathering is a key process in soil formation and the importance of microbial-driven mineral weathering for nutrient extraction is increasingly accepted. Advances in geobiology provide insight into the interactions between microorganisms and minerals that play an important role in weathering processes. In this study, we present the examination of the microbial diversity in dryland rocks from the Tsauchab River banks in Namibia. We paired culture-independent 16S rRNA gene amplicon sequencing with culture-dependent (isolation of bacteria) techniques to assess the community structure and diversity patterns. Bacteria isolated from dryland rocks are typical of xeric environments and are described as being involved in rock weathering processes. For the first time, we extracted extra- and intracellular DNA from rocks to enhance our understanding of potentially rock-weathering microorganisms. We compared the microbial community structure in different rock types (limestone, quartz-rich sandstone and quartz-rich shale) with adjacent soils below the rocks. Our results indicate differences in the living lithic and sublithic microbial communities.

scholarly journals Biogeochemical Controls on the Potential for Long-Term Contaminant Leaching from Soils Developing on Historic Coal Mine Spoil

Soil Systems ◽  
2020 ◽  
Vol 5 (1) ◽  
pp. 3
Author(s):  
David Singer ◽  
Elizabeth Herndon ◽  
Laura Zemanek ◽  
Kortney Cole ◽  
Tyler Sanda ◽  
...  
Keyword(s):  
Coal Mine ◽  
Solid Phase ◽  
Microbial Community Composition ◽  
Toxic Metal ◽  
Soil Formation ◽  
Mineral Weathering ◽  
Mine Spoil ◽  
Secondary Phases ◽  
Undisturbed Soil

Coal mine spoil is widespread in US coal mining regions, and the potential long-term leaching of toxic metal(loid)s is a significant and underappreciated issue. This study aimed to determine the flux of contaminants from historic mine coal spoil at a field site located in Appalachian Ohio (USA) and link pore water composition and solid-phase composition to the weathering reaction stages within the soils. The overall mineralogical and microbial community composition indicates that despite very different soil formation pathways, soils developing on historic coal mine spoil and an undisturbed soil are currently dominated by similar mineral weathering reactions. Both soils contained pyrite coated with clays and secondary oxide minerals. However, mine spoil soil contained abundant residual coal, with abundant Fe- and Mn- (oxy)hydroxides. These secondary phases likely control and mitigate trace metal (Cu, Ni, and Zn) transport from the soils. While Mn was highly mobile in Mn-enriched soils, Fe and Al mobility may be more controlled by dissolved organic carbon dynamics than mineral abundance. There is also likely an underappreciated risk of Mn transport from coal mine spoil, and that mine spoil soils could become a major source of metals if local biogeochemical conditions change.

Urban community structure detection based on the OD of traffic analysis zones

2019 ◽  
Vol 33 (13) ◽  
pp. 1950164
Author(s):  
Qing-Feng Dong ◽  
Dian-Kun Chen ◽  
Ting Wang
Keyword(s):  
Community Structure ◽  
Quantitative Methods ◽  
Urban Community ◽  
Spatial Location ◽  
Traffic Analysis ◽  
Association Mining ◽  
Community Structures ◽  
City Community ◽  
Traffic Characteristics ◽  
Structure Detection

At present, the detection of urban community structures is mainly based on existing administrative divisions, and is performed using qualitative methods. The lack of quantitative methods makes it difficult to judge the rationality of urban community divisions. In this study, we used complex network association mining methods to detect a city community structure by using the Origin-Destinations (OD) at traffic analysis zone (TAZ) level, and successively assigned all the TAZs into different communities. Based on the community results, we calculated the community core degree of each TAZ within every community, and then calculated the Traffic Core Degree and Location Core Degree indicators of the community based on OD passenger flow and spatial location relationship between communities. Finally, we analyzed the correlation among three indicators to ensure the rationality of the community structure. We used the city of Zhengzhou in 2016 as an example case study. For Zhengzhou, we detected a total of six communities. We found a relatively low correlation between Traffic Core Degree and Location Core Degree. Within each group, the correlation between community core degree and Traffic Core Degree was higher than that between community core degree and Location Core Degree, indicating that the urban community structure is more reasonably based on traffic characteristics. The development of a quantitative approach for determining reasonable city community structures has important implications for transportation planning and industrial layout.

scholarly journals Euphausiid community structure and population structure of Euphausia superba off Adélie Land in the Southern Ocean during austral summer 2003, 2005 and 2008

Polar Science ◽  
2011 ◽  
Vol 5 (2) ◽  
pp. 146-165 ◽  
Author(s):  
Atsushi Ono ◽  
Masato Moteki ◽  
Kazuo Amakasu ◽  
Ryoji Toda ◽  
Naho Horimoto ◽  
...  
Keyword(s):  
Population Structure ◽  
Community Structure ◽  
Southern Ocean ◽  
Austral Summer ◽  
Euphausia Superba

Community Detection in Political Discussions on Twitter

2016 ◽  
Vol 35 (2) ◽  
pp. 244-261 ◽  
Author(s):  
Frederic Guerrero-Solé
Keyword(s):  
Community Structure ◽  
Community Detection ◽  
Reliable Method ◽  
Community Structures ◽  
Network Community ◽  
High Polarization

In November 9, 2014, the Catalan government called Catalan people to participate in a straw poll about the independence of Catalonia from Spain. This article analyzes the use of Twitter between November 8 and 10, 2014. Drawing on a methodology developed by Guerrero-Solé, Corominas-Murtra, and Lopez-Gonzalez, this work examines the structure of the retweet overlap network (RON), formed by those users whose communities of retweeters have nonzero overlapping, to detect the community structure of the network. The results show a high polarization of the resulting network and prove that the RON is a reliable method to determinate network community structures and users’ political leaning in political discussions.

scholarly journals High-throughput amplicon sequencing reveals the spatiotemporal effects, abiotic and biotic shaping factors for the microbial communities in tropical mangrove sediments in Sanya, China

2020 ◽  
Author(s):  
Wu Qu ◽  
Boliang Gao ◽  
Jie Wu ◽  
Min Jin ◽  
Jianxin Wang ◽  
...  
Keyword(s):  
Community Structure ◽  
Microbial Community ◽  
Microbial Communities ◽  
Fungal Community ◽  
Amplicon Sequencing ◽  
Biotic Factors ◽  
Community Structures ◽  
Mangrove Sediments ◽  
Element Cycling ◽  
Microbial Community Structures

Abstract Background Microbial roles in element cycling and nutrient providing are crucial for mangrove ecosystems and serve as important regulators for climate change in Earth ecosystem. However, some key information about the spatiotemporal influences and abiotic and biotic shaping factors for the microbial communities in mangrove sediments remains lacking. Methods In this work, 22 sediment samples were collected from multiple spatiotemporal dimensions, including three locations, two depths, and four seasons, and the bacterial, archaeal, and fungal community structures in these samples were studied using amplicon sequencing. Results The microbial community structures were varied in the samples from different depths and locations based on the results of LDA effect size analysis, principal coordinate analysis, the analysis of similarities, and permutational multivariate ANOVA. However, these microbial community structures were stable among the seasonal samples. Linear fitting models and Mantel test showed that among the 13 environmental factors measured in this study, the sediment particle size (PS) was the key abiotic shaping factor for the bacterial, archaeal, or fungal community structure. Besides PS, salinity and humidity were also significant impact factors according to the canonical correlation analysis (p ≤ 0.05). Co-occurrence networks demonstrated that the bacteria assigned into phyla Ignavibacteriae, Proteobacteria, Bacteroidetes, Chloroflexi, and Acidobacteria were the key biotic factors for shaping the bacterial community in mangrove sediments. Conclusions This work showed the variability on spatial dimensions and the stability on temporal dimension for the bacterial, archaeal, or fungal microbial community structure, indicating that the tropical mangrove sediments are versatile but stable environments. PS served as the key abiotic factor could indirectly participate in material circulation in mangroves by influencing microbial community structures, along with salinity and humidity. The bacteria as key biotic factors were found with the abilities of photosynthesis, polysaccharide degradation, or nitrogen fixation, which were potential indicators for monitoring mangrove health, as well as crucial participants in the storage of mangrove blue carbons and mitigation of climate warming. This study expanded the knowledge of mangroves for the spatiotemporal variation, distribution, and regulation of the microbial community structures, thus further elucidating the microbial roles in mangrove management and climate regulation.

scholarly journals MICROMORPHOLOGY AND PEDOGENESIS OF MOUNTAINOUS INCEPTISOLS IN THE MANTIQUEIRA RANGE (MG)

2015 ◽  
Vol 39 (5) ◽  
pp. 455-462 ◽  
Author(s):  
Leandro Campos Pinto ◽  
Yuri Lopes Zinn ◽  
Carlos Rogério de Mello ◽  
Phillip Ray Owens ◽  
Lloyd Darrell Norton ◽  
...  
Keyword(s):  
Soil Formation ◽  
Intermediate Stage ◽  
Mineral Weathering ◽  
Southeastern Brazil ◽  
Native Forest ◽  
Subtropical Climate ◽  
Formation Processes ◽  
Severe Reduction ◽  
Mineral Alteration ◽  
Quartz Grains

ABSTRACTUnderstanding soil formation processes across different landscapes is needed to predict how soil properties will respond to land use change. This study aimed to characterize mountainous Inceptisols (Cambisols) under high altitude subtropical climate in southeastern Brazil, by soil physical, chemical and micromorphological analyses, under native forest and pasture. The soil under pasture had a greater bulk density than under forest, resulting in a severe reduction of macroporosity. At two depths, coarse quartz grains are angular, suggesting absence of transportational processes, thus confirming an autochthonous pedogenesis from the underlying gneissic rock. Most feldspars were weathered beyond recognition, but mineral alteration was commonly seen across cleavage plans and edges of micas. The micromorphological results suggest an intermediate stage of mineral weathering and soil development, which is in accordance with properties expected to be found in Inceptisols.

Weathering and soil formation on dolerite in Tasmania with particular reference to several trace elements

Soil Research ◽  
1963 ◽  
Vol 1 (1) ◽  
pp. 74 ◽  
Author(s):  
KG Tiller
Keyword(s):  
Trace Elements ◽  
Soil Formation ◽  
Fine Sand ◽  
Climatic Conditions ◽  
Parent Material ◽  
Soil Profiles ◽  
Podzolic Soils ◽  
Nickel Copper ◽  
Soil Groups

The mineralogy and chemistry of weathering and soil formation have been studied at 17 widely separated sites with contrasting climatic conditions on comparatively uniform dolerite in Tasmania. The clay and fine sand mineralogy of the soils has been related to their degree of weathering. These studies have shown large chemical and mineralogical changes accompanying the initial stages of weathering in some krasnozem soils. The reorganization of cobalt, zirconium, nickel, copper, molybdenum, manganese, and zinc during genesis of four soil groups has been considered in terms of the factors involved. Some of these results indicate that the clay horizon of the podzolic soils has probably been formed by weathering in situ. Seasonal waterlogging in certain horizons has strongly mfluenced the chemistry and mineralogy of weathering in many of these soils. This study has shown that the composition of the parent material has only influenced the geochemistry of trace elements in less weathered soils and that pedogenic factors assumed greater significance as the soils became more strongly weathered. Geomorphic processes had a marked influence on the geochemistry of some soils by the truncation of mature soil profiles.

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