scholarly journals Variations in bacterial and archaeal community structure and diversity along the soil profiles of a peatland in Southwest China

Author(s):  
Wei Li ◽  
Mingmo Luo ◽  
Rui Shi ◽  
Defeng Feng ◽  
Zhenan Yang ◽  
...  
2021 ◽  
Author(s):  
Wei Li ◽  
Mingmo Luo ◽  
Rui Shi ◽  
Defeng Feng ◽  
Zhenan Yang ◽  
...  

Abstract As bacteria and archaea are key components in the ecosystem, their alterations along soil profiles are important in understanding the biogeochemical cycles in peatland. However, little is known about the vertical distribution patterns of bacteria and archaea along the Bitahai peatland, as well as their relationship to soil chemical properties. Here, sequencing of 16S rRNA genes (Illumina, MiSeq) was used to analyze bacterial and archaeal abundance, diversity, and composition across 0-100 cm of the soil. Soil pH, total C, N, and P concentrations and stoichiometric ratios also were estimated. Results revealed that total C and total N contents, as well as C:P and N:P ratios, significantly increased with increasing peatland depths, while total P decreased. The top three dominant phyla were Proteobacteria (39.64%), Acidobacteria (12.93%), and Chloroflexi (12.81%) in bacterial communities, and were Crenarchaeota (58.67%), Thaumarchaeota (14.34%), and Euryarchaeota (10.82%) in archaeal communities in the Bitahai peatland, respectively. The total relative abundance of the methanogenic groups and ammonia-oxidizing microorganisms all significantly decreased with soil depths. Both bacterial and archaeal diversity were greatly affected by the soil depths. Soil C, N, and P concentrations and stoichiometric ratios markedly impacted the community structure and diversity just in archaea, not in bacteria. Therefore, these results highlighted that the microbial community structure and diversity depended on soil depths, and the affecting factors for bacteria and archaea were different in the peatlands.


2011 ◽  
Vol 19 (3) ◽  
pp. 369-376
Author(s):  
Gu Yunfu ◽  
Zhang Xiaoping ◽  
Tu Shihua ◽  
Lindström Kristina

2016 ◽  
Vol 62 (6) ◽  
pp. 485-491 ◽  
Author(s):  
Samiran Banerjee ◽  
Nabla Kennedy ◽  
Alan E. Richardson ◽  
Keith N. Egger ◽  
Steven D. Siciliano

Archaea are ubiquitous and highly abundant in Arctic soils. Because of their oligotrophic nature, archaea play an important role in biogeochemical processes in nutrient-limited Arctic soils. With the existing knowledge of high archaeal abundance and functional potential in Arctic soils, this study employed terminal restriction fragment length polymorphism (t-RFLP) profiling and geostatistical analysis to explore spatial dependency and edaphic determinants of the overall archaeal (ARC) and ammonia-oxidizing archaeal (AOA) communities in a high Arctic polar oasis soil. ARC communities were spatially dependent at the 2–5 m scale (P < 0.05), whereas AOA communities were dependent at the ∼1 m scale (P < 0.0001). Soil moisture, pH, and total carbon content were key edaphic factors driving both the ARC and AOA community structure. However, AOA evenness had simultaneous correlations with dissolved organic nitrogen and mineral nitrogen, indicating a possible niche differentiation for AOA in which dry mineral and wet organic soil microsites support different AOA genotypes. Richness, evenness, and diversity indices of both ARC and AOA communities showed high spatial dependency along the landscape and resembled scaling of edaphic factors. The spatial link between archaeal community structure and soil resources found in this study has implications for predictive understanding of archaea-driven processes in polar oases.


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