scholarly journals Heterotrophic Bacterial Growth Efficiency and Community Structure at Different Natural Organic Carbon Concentrations

2003 ◽  
Vol 69 (7) ◽  
pp. 3701-3709 ◽  
Author(s):  
Alexander Eiler ◽  
Silke Langenheder ◽  
Stefan Bertilsson ◽  
Lars J. Tranvik
Keyword(s):  
Growth Rate ◽  
Organic Matter ◽  
Organic Carbon ◽  
Dissolved Organic Matter ◽  
Community Composition ◽  
Bacterial Growth ◽  
Bacterial Biomass ◽  
Growth Efficiency ◽  
Bacterial Growth Efficiency ◽  
Doc Concentration

ABSTRACT Batch cultures of aquatic bacteria and dissolved organic matter were used to examine the impact of carbon source concentration on bacterial growth, biomass, growth efficiency, and community composition. An aged concentrate of dissolved organic matter from a humic lake was diluted with organic compound-free artificial lake water to obtain concentrations of dissolved organic carbon (DOC) ranging from 0.04 to 2.53 mM. The bacterial biomass produced in the cultures increased linearly with the DOC concentration, indicating that bacterial biomass production was limited by the supply of carbon. The bacterial growth rate in the exponential growth phase exhibited a hyperbolic response to the DOC concentration, suggesting that the maximum growth rate was constrained by the substrate concentration at low DOC concentrations. Likewise, the bacterial growth efficiency calculated from the production of biomass and CO2 increased asymptotically from 0.4 to 10.4% with increasing DOC concentration. The compositions of the microbial communities that emerged in the cultures were assessed by separation of PCR-amplified 16S rRNA fragments by denaturing gradient gel electrophoresis. Nonmetric multidimensional scaling of the gel profiles showed that there was a gradual change in the community composition along the DOC gradient; members of the β subclass of the class Proteobacteria and members of the Cytophaga-Flavobacterium group were well represented at all concentrations, whereas members of the α subclass of the Proteobacteria were found exclusively at the lowest carbon concentration. The shift in community composition along the DOC gradient was similar to the patterns of growth efficiency and growth rate. The results suggest that the bacterial growth efficiencies, the rates of bacterial growth, and the compositions of bacterial communities are not constrained by substrate concentrations in most natural waters, with the possible exception of the most oligotrophic environments.

scholarly journals Limitation of Bacterial Growth by Dissolved Organic Matter and Iron in the Southern Ocean

2000 ◽  
Vol 66 (2) ◽  
pp. 455-466 ◽  
Author(s):  
Matthew J. Church ◽  
David A. Hutchins ◽  
Hugh W. Ducklow
Keyword(s):  
Organic Matter ◽  
Dissolved Organic Matter ◽  
Southern Ocean ◽  
Bacterial Growth ◽  
Bacterial Biomass ◽  
Biomass Accumulation ◽  
Growth Efficiency ◽  
Bacterial Growth Efficiency ◽  
Leucine Incorporation ◽  
Mean Cell Volume

ABSTRACT The importance of resource limitation in controlling bacterial growth in the high-nutrient, low-chlorophyll (HNLC) region of the Southern Ocean was experimentally determined during February and March 1998. Organic- and inorganic-nutrient enrichment experiments were performed between 42°S and 55°S along 141°E. Bacterial abundance, mean cell volume, and [3H]thymidine and [3H]leucine incorporation were measured during 4- to 5-day incubations. Bacterial biomass, production, and rates of growth all responded to organic enrichments in three of the four experiments. These results indicate that bacterial growth was constrained primarily by the availability of dissolved organic matter. Bacterial growth in the subtropical front, subantarctic zone, and subantarctic front responded most favorably to additions of dissolved free amino acids or glucose plus ammonium. Bacterial growth in these regions may be limited by input of both organic matter and reduced nitrogen. Unlike similar experimental results in other HNLC regions (subarctic and equatorial Pacific), growth stimulation of bacteria in the Southern Ocean resulted in significant biomass accumulation, apparently by stimulating bacterial growth in excess of removal processes. Bacterial growth was relatively unchanged by additions of iron alone; however, additions of glucose plus iron resulted in substantial increases in rates of bacterial growth and biomass accumulation. These results imply that bacterial growth efficiency and nitrogen utilization may be partly constrained by iron availability in the HNLC Southern Ocean.

scholarly journals Bioavailability of surface dissolved organic matter to aphotic bacterial communities in the Amundsen Sea Polynya, Antarctica

Elem Sci Anth ◽  
2015 ◽  
Vol 3 ◽  
Author(s):  
Rachel E. Sipler ◽  
Tara L. Connelly
Keyword(s):  
Organic Matter ◽  
Dissolved Organic Matter ◽  
Bacterial Growth ◽  
Bacterial Communities ◽  
Bacterial Abundance ◽  
Open Water ◽  
Growth Efficiency ◽  
Bacterial Growth Efficiency ◽  
Ice Algae ◽  
Amundsen Sea

Abstract Antarctic seas, and particularly the Amundsen Sea Polynya, are some of the most productive oceanic regions on Earth. Ice-algal production during austral spring is followed by open-water pelagic production later in the season. Although ice-free growth accounts for a greater percentage of the annual net primary production, ice algae provide an important source of nutrients to organisms throughout the water column and benthos in areas and seasons when open-water production is insignificant. The objectives of this study were to assess the bioavailability of dissolved organic matter (DOM), sourced from ice algae or the chlorophyll maximum (chl max), to marine bacterioplankton and to determine the fate of carbon within these different DOM pools, including loss to respiration, incorporation into bacterial biomass and retention within the DOM pool itself. Nutrient concentrations and bacterial abundance, production, and cell volume were monitored during a 7-day bioassay study involving four treatments conducted shipboard in the Amundsen Sea Polynya, Antarctica. The greatest response in bacterial abundance and activity was observed when ice-algal meltwater was supplied to aphotic zone bacterioplankton collected from 170-m depth. However, bacterial growth efficiency was higher (24%) when chl max water was supplied to the same aphotic zone bacterial community compared to the bacterial growth efficiency of the ice-algal treatment (15%). Approximately 15% of dissolved organic carbon (DOC) from the ice-algal source and 18% from the chl max was consumed by aphotic bacterial communities over the relatively short, one-week incubation. In contrast, 65% of the dissolved organic nitrogen (DON) added as an integral part of the ice-algal DOM was consumed, but none of the DON supplied with chl max water was labile. This study underscores the importance of considering DOM sources when investigating or predicting changes in carbon and nitrogen cycling within the Amundsen Sea.

scholarly journals Response of heterotrophic and autotrophic microbial plankton to inorganic and organic inputs along a latitudinal transect in the Atlantic Ocean

2010 ◽  
Vol 7 (5) ◽  
pp. 1701-1713 ◽  
Author(s):  
S. Martínez-García ◽  
E. Fernández ◽  
A. Calvo-Díaz ◽  
E. Marañón ◽  
X. A. G. Morán ◽  
...  
Keyword(s):  
Organic Matter ◽  
Atlantic Ocean ◽  
Bacterial Growth ◽  
Heterotrophic Bacteria ◽  
Growth Efficiency ◽  
Bacterial Growth Efficiency ◽  
Organic Nutrient ◽  
Plankton Biomass ◽  
Latitudinal Transect ◽  
Microbial Plankton

Abstract. The effects of inorganic and/or organic nutrient inputs on phytoplankton and heterotrophic bacteria have never been concurrently assessed in open ocean oligotrophic communities over a wide spatial gradient. We studied the effects of potentially limiting inorganic (nitrate, ammonium, phosphate, silica) and organic nutrient (glucose, aminoacids) inputs added separately as well as jointly, on microbial plankton biomass, community structure and metabolism in five microcosm experiments conducted along a latitudinal transect in the Atlantic Ocean (from 26° N to 29° S). Primary production rates increased up to 1.8-fold. Bacterial respiration and microbial community respiration increased up to 14.3 and 12.7-fold respectively. Bacterial production and bacterial growth efficiency increased up to 58.8-fold and 2.5-fold respectively. The largest increases were measured after mixed inorganic-organic nutrients additions. Changes in microbial plankton biomass were small as compared with those in metabolic rates. A north to south increase in the response of heterotrophic bacteria was observed, which could be related to a latitudinal gradient in phosphorus availability. Our results suggest that organic matter inputs will result in a predominantly heterotrophic versus autotrophic response and in increases in bacterial growth efficiency, particularly in the southern hemisphere. Subtle differences in the initial environmental and biological conditions are likely to result in differential microbial responses to inorganic and organic matter inputs.

scholarly journals Trait-based approach to bacterial growth efficiency

2018 ◽  
Author(s):  
Mario E. Muscarella ◽  
Xia Meng Howey ◽  
Jay T. Lennon
Keyword(s):  
Growth Rate ◽  
Bacterial Growth ◽  
Maximum Growth ◽  
Growth Efficiency ◽  
Maximum Growth Rate ◽  
Bacterial Growth Efficiency ◽  
Species Identity ◽  
Trade Offs ◽  
Aggregate Property ◽  
Resource Type

AbstractBacterial growth efficiency (BGE) is the proportion of assimilated carbon that is converted into biomass and reflects the balance between growth and energetic demands. Often measured as an aggregate property of the community, BGE is highly variable within and across ecosystems. To understand this variation, we first identified how species identity and resource type affect BGE using 20 bacterial isolates belonging to the phylum Proteobacteria that were enriched from north temperate lakes. Using a trait-based approach that incorporated genomic and phenotypic information, we characterized the metabolism of each isolate and tested for predicted trade-offs between growth rate and efficiency. A substantial amount of variation in BGE could be explained at both broad (i.e., order, 20 %) and fine (i.e., strain, 58 %) taxonomic levels. While resource type was a relatively weak predictor across species, it explained > 60 % of the variation in BGE within a given species. Furthermore, a metabolic trade-off (between maximum growth rate and efficiency) and genomic features revealed that BGE is a predictable metabolic feature. Our study suggests that genomic and phylogenetic information may help predict aggregate microbial community functions like BGE and the fate of carbon in ecosystems.Originality and SignificanceBacterial growth efficiency (BGE) is an important yet notoriously variable measure of metabolism that has proven difficult to predict. To better understand how assimilated carbon is allocated, we explored growth efficiency across a collection of bacteria strains using a trait-based approach. Specifically, we measured respiration and biomass formation rates for populations grown in minimal media containing one of three carbon resources. In addition, we collected a suite of physiological traits to describe each strain, and we sequenced the genome of each organism. Our results suggest that species identity and resource type may contribute to growth efficiency when measured as an aggregate property of a natural community. In addition, we identified genomic pathways that are associated with elevated BGE. The findings have implications for integrating microbial metabolism from the cellular to ecosystem scale.

scholarly journals Seasonal Changes in Dissolved Organic Matter Composition in a Patagonian Fjord Affected by Glacier Melt Inputs

2021 ◽  
Vol 8 ◽  
Author(s):  
Matthew G. Marshall ◽  
Anne M. Kellerman ◽  
Jemma L. Wadham ◽  
Jon R. Hawkings ◽  
Giovanni Daneri ◽  
...  
Keyword(s):  
Organic Matter ◽  
Surface Layer ◽  
Organic Carbon ◽  
Dissolved Organic Matter ◽  
Relative Contribution ◽  
Glacier Melt ◽  
Level Data ◽  
Chilean Patagonia ◽  
Doc Concentration ◽  
Dom Composition

Biogeochemical processes in fjords are likely affected by changes in surrounding glacier cover but very little is known about how meltwater directly influences dissolved organic matter (DOM) in fjords. Moreover, the data available are restricted to a handful of northern hemisphere sites. Here we analyze seasonal and spatial variation in dissolved organic carbon (DOC) concentration and DOM composition (spectrofluorescence, ultrahigh resolution mass spectrometry) in Baker-Martinez Fjord, Chilean Patagonia (48°S), to infer the impacts of rapid regional deglaciation on fjord DOM. We show that surface layer DOC concentrations do not vary significantly between seasons, but DOM composition is sensitive to differences in riverine inputs. In summer, higher protein-like fluorescence reflects increased glacial meltwater inputs, whilst molecular level data show weaker influence from marine DOM due to more intense stratification. We postulate that the shifting seasonal balance of riverine and marine waters affects the supply of biolabile peptides and organic nitrogen cycling in the surface layer. Trends in DOM composition with increasing salinity are consistent with patterns in estuaries (i.e. preferential removal of aromatic compounds and increasing relative contribution of unsaturated and heteroatom-rich DOM from marine sources). Preliminary estimates also suggest that at least 10% of the annual organic carbon stock in this fjord is supplied by the four largest, glacially fed rivers and that these inputs are dominated by dissolved (84%) over particulate organic carbon. Riverine DOC may therefore be an important carbon subsidy to bacterial communities in the inner fjord. The overall findings highlight the biogeochemical sensitivity of a Patagonian fjord to changes in glacier melt input, which likely has relevance for other glaciated fjords in a warming climate.

scholarly journals The non-conservative distribution pattern of organic matter in Rajang, a tropical river with peatland in its estuary

2019 ◽  
Author(s):  
Zhuoyi Zhu ◽  
Joanne Oakes ◽  
Bradley Eyre ◽  
Youyou Hao ◽  
Edwin Sien Aun Sia ◽  
...  
Keyword(s):  
Amino Acids ◽  
Organic Matter ◽  
Organic Carbon ◽  
Dissolved Organic Matter ◽  
Anthropogenic Activities ◽  
Field Investigation ◽  
Organic Matter Composition ◽  
Doc Concentration ◽  
Nitrogen Ratio ◽  
Export Pattern

Abstract. South-east Asian peatland-draining rivers have attracted much attention due to their high dissolved organic carbon (DOC) yield and high CO2 emissions under anthropogenic activities. In August 2016, we carried out a field investigation of the Rajang river and estuary, a tropical system located in Sarawak, Malaysia. The Rajang has peatland in its estuary while the river basin is covered by tropical rainforest. DOC δ13C in the Rajang ranged from −28.7 ‰ to −20.1 ‰ and a U-shaped trend from river to estuary was identified. For particulate organic carbon (POC), the δ13C ranged between −29.4 ‰ to −31.1 ‰ in the river and a clear increasing trend towards more δ13C -enriched with higher salinity existed in the estuary. In the estuary, there was a linear conservative dilution pattern for dissolved organic matter composition (as quantified by D/L amino acids enantiomers) plotted against DOC δ13C, whereas when plotted against salinity dissolved D/L amino acids enantiomers values were higher than the theoretical dilution value. Together, these data indicate that the addition of DOC in estuary (by peatland) not only increased the DOC concentration, but also altered its composition, by adding more bio-degraded, 13C-depleted organic matter into the bulk dissolved organic matter. Alteration of organic matter composition (adding of more degraded subpart) was also apparent for the particulate phase, but patterns were less clear. The Rajang was characterized by DOC / DON ratios of 50 in the river section, with loss of DON in the estuary increased the ratio to 140, suggesting the unbalanced export pattern for organic carbon and nitrogen, respectively. Under anthropogenic activities, further assessment of organic carbon to nitrogen ratio is needed.

scholarly journals Potential bioavailability of organic matter from atmospheric particles to marine heterotrophic bacteria

2020 ◽  
Vol 17 (24) ◽  
pp. 6271-6285
Author(s):  
Kahina Djaoudi ◽  
France Van Wambeke ◽  
Aude Barani ◽  
Nagib Bhairy ◽  
Servanne Chevaillier ◽  
...  
Keyword(s):  
Organic Matter ◽  
Organic Carbon ◽  
Incubation Period ◽  
Bacterial Growth ◽  
Heterotrophic Bacteria ◽  
Water Soluble ◽  
Bacterial Growth Efficiency ◽  
Anthropogenic Aerosols ◽  
Biogeochemical Models ◽  
Marine Heterotrophic Bacteria

Abstract. The surface ocean receives important amounts of organic carbon from atmospheric deposition. The degree of bioavailability of this source of organic carbon will determine its impact on the marine carbon cycle. In this study, the potential availability of dissolved organic carbon (DOC) leached from both desert dust and anthropogenic aerosols to marine heterotrophic bacteria was investigated. The experimental design was based on 16 d incubations, in the dark, of a marine bacterial inoculum into artificial seawater amended with water-soluble Saharan dust (D treatment) and anthropogenic (A treatment) aerosols, so that the initial DOC concentration was similar between treatments. Glucose-amended (G) and non-amended (control) treatments were run in parallel. Over the incubation period, an increase in bacterial abundance (BA) and bacterial production (BP) was observed first in the G treatment, followed then by the D and finally A treatments, with bacterial growth rates significantly higher in the G and D treatments than the A treatment. Following this growth, maxima of BP reached were similar in the D (879 ± 64 ng C L−1 h−1; n=3) and G (648 ± 156 ng C L−1 h−1; n=3) treatments and were significantly higher than in the A treatment (124 ng C L−1 h−1; n=2). The DOC consumed over the incubation period was similar in the A (9 µM; n=2) and D (9 ± 2 µM; n=3) treatments and was significantly lower than in the G treatment (22 ± 3 µM; n=3). Nevertheless, the bacterial growth efficiency (BGE) in the D treatment (14.2 ± 5.5 %; n=3) compared well with the G treatment (7.6 ± 2 %; n=3), suggesting that the metabolic use of the labile DOC fraction in both conditions was energetically equivalent. In contrast, the BGE in the A treatment was lower (1.7 %; n=2), suggesting that most of the used labile DOC was catabolized. The results obtained in this study highlight the potential of aerosol organic matter to sustain the metabolism of marine heterotrophs and stress the need to include this external source of organic carbon in biogeochemical models for a better constraining of the carbon budget.

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