scholarly journals Draft Genome of Pseudomonas stutzeri Strain NF13, a Nitrogen Fixer Isolated from the Galapagos Rift Hydrothermal Vent

2013 ◽  
Vol 1 (2) ◽  
Author(s):  
A. Pena ◽  
A. Busquets ◽  
M. Gomila ◽  
J. Mayol ◽  
R. Bosch ◽  
...  
2016 ◽  
Vol 4 (2) ◽  
Author(s):  
Rupa Iyer ◽  
Ashish Damania

Pseudomonas stutzeri ODKF13 is a bacterial microorganism isolated from farmland soil in Alvin, Texas. This strain is notable for its naphthalene degradation and nitrogen fixation pathways and for its characterization as an organophosphate degrader of phosphotriester and phosphorothioate insecticides.


2015 ◽  
Vol 3 (6) ◽  
Author(s):  
Meixian Zhou ◽  
Yunbiao Xie ◽  
Binbin Dong ◽  
Qing Liu ◽  
Xiaoyao Chen

Here, we report the draft 2,261,881-bp genome sequence of Caloranaerobacter sp. TR13, isolated from a deep-sea hydrothermal vent on the East Pacific Rise. The sequence will be helpful for understanding the genetic and metabolic features, as well as potential biotechnological application in the genus Caloranaerobacter .


2013 ◽  
Vol 280 (1770) ◽  
pp. 20131876 ◽  
Author(s):  
Elizabeth Borda ◽  
Jerry D. Kudenov ◽  
Pierre Chevaldonné ◽  
James A. Blake ◽  
Daniel Desbruyères ◽  
...  

Since its description from the Galapagos Rift in the mid-1980s, Archinome rosacea has been recorded at hydrothermal vents in the Pacific, Atlantic and Indian Oceans. Only recently was a second species described from the Pacific Antarctic Ridge. We inferred the identities and evolutionary relationships of Archinome representatives sampled from across the hydrothermal vent range of the genus, which is now extended to cold methane seeps. Species delimitation using mitochondrial cytochrome c oxidase subunit I (COI) recovered up to six lineages, whereas concatenated datasets (COI, 16S, 28S and ITS1) supported only four or five of these as clades. Morphological approaches alone were inconclusive to verify the identities of species owing to the lack of discrete diagnostic characters. We recognize five Archinome species, with three that are new to science. The new species, designated based on molecular evidence alone, include: Archinome levinae n. sp., which occurs at both vents and seeps in the east Pacific, Archinome tethyana n. sp., which inhabits Atlantic vents and Archinome jasoni n. sp., also present in the Atlantic, and whose distribution extends to the Indian and southwest Pacific Oceans. Biogeographic connections between vents and seeps are highlighted, as are potential evolutionary links among populations from vent fields located in the east Pacific and Atlantic Oceans, and Atlantic and Indian Oceans; the latter presented for the first time.


2017 ◽  
Vol 5 (17) ◽  
Author(s):  
Chen Chen ◽  
Li Sun

ABSTRACT We report here the draft genome sequence of Exiguobacterium sp. HVEsp1, a thermophilic bacterium isolated from a deep-sea hydrothermal vent. The estimated genome size of this strain is 2,838,499 bp with a G+C content of 48.2%. The genome sequence data provide valuable information that will facilitate studies on the adaptation mechanisms of bacteria living in deep-sea hydrothermal vents.


2016 ◽  
Vol 4 (5) ◽  
Author(s):  
Daniel E. Ross ◽  
Djuna Gulliver

The draft genome sequence of Pseudomonas stutzeri strain K35 was separated from a metagenome derived from a produced water microbial community of a coalbed methane well. The genome encodes a complete nitrogen fixation pathway and the upper and lower naphthalene degradation pathways.


2021 ◽  
Vol 10 (34) ◽  
Author(s):  
Emilie J. Skoog ◽  
Julie A. Huber ◽  
Margrethe H. Serres ◽  
Alice Levesque ◽  
Lisa Zeigler Allen

A thermophilic chemolithoautotrophic bacterium was isolated from vent fluids at Axial Seamount, an active deep-sea volcano in the northeast Pacific Ocean. We present the draft genome sequence of Desulfurobacterium sp. strain AV08.


2017 ◽  
Vol 5 (23) ◽  
Author(s):  
Benjamin Tully ◽  
Pratixaben Savalia ◽  
Karla Abuyen ◽  
Christina Baughan ◽  
Eric Romero ◽  
...  

ABSTRACT Geothermobacter sp. strain EPR-M was isolated from a hydrothermal vent on the East Pacific Rise and has been shown to participate in the reduction of Fe(III) oxides. Here, we report its 3.73-Mb draft genome sequence.


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