scholarly journals Draft Genome Sequence of Microbacterium sp. Strain HM58-2, Which Hydrolyzes Acylhydrazides

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Tomonori Akiyama ◽  
Taichiro Ishige ◽  
Yu Kanesaki ◽  
Shinsaku Ito ◽  
Ken-Ichi Oinuma ◽  
...  
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Sequence Information ◽  
Genome Sequence Information ◽  
Ecological Applications

We report the draft genome sequence of Microbacterium sp. strain HM58-2, which produces hydrazidase, an enzyme hydrolyzing acylhydrazides. The estimated genome size is 3.9 Mb. Genome sequence information of this strain will help to identify an assimilating mechanism of nonnatural compounds in this strain and to develop ecological applications.

scholarly journals Draft Genome Sequence of Bradyrhizobium japonicum Is-1, Which Is Incompatible with Rj 2 Genotype Soybeans

2015 ◽  
Vol 3 (5) ◽  
Author(s):  
Tomoyuki Sakata ◽  
Yu Kanesaki ◽  
Hirofumi Yoshikawa ◽  
Hirohito Tsurumaru ◽  
Takeo Yamakawa
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Bradyrhizobium Japonicum ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Sequence Information ◽  
Causal Gene ◽  
Genome Sequence Information

We report the draft genome sequence of Bradyrhizobium japonicum Is-1, which is incompatible with Rj 2 genotype soybeans. The estimated genome size of this strain is 8.9 Mb. Genome sequence information of this strain will help to identify a causal gene for this incompatibility.

scholarly journals Draft Genome Sequence of Ralstonia solanacearum Strain Rs-T02, Which Represents the Most Prevalent Phylotype in Guangxi, China

2016 ◽  
Vol 4 (2) ◽  
Author(s):  
Chengwu Zou ◽  
Kaihao Wang ◽  
Jiaorong Meng ◽  
Gaoqing Yuan ◽  
Wei Lin ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Ralstonia Solanacearum ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Comparative Genomic ◽  
Sequence Information ◽  
Guangxi Province ◽  
Solanacearum Strain ◽  
Genomic Studies ◽  
Genome Sequence Information

Ralstonia solanacearum strain Rs-T02 was originally isolated from a bacterial wilt of tomato plant in Nanning City of Guangxi Province, China. It represents the most prevalent phylotype in Guangxi. Here, we present the draft genome sequence of this strain, which comprises 5,225 genes and 5,976,011 nucleotides with an average G+C content of 66.79%. There are 968 different genes between this isolate and the previously reported genome sequence of Ralstonia solanacearum GMl l000 (race l, biovar 3, phylotype I), and the genome sequence information of this isolate may be useful for comparative genomic studies to determine the genetic diversity in this species.

scholarly journals Genome Sequence of Clostridium botulinum Strain Adk2012 Associated with a Foodborne Botulinum Case in Tottori, Japan, in 2012

2017 ◽  
Vol 5 (34) ◽  
Author(s):  
Hiroshi Asakura ◽  
Shiori Yamamoto ◽  
Yoshika Momose ◽  
Haru Kato ◽  
Masaaki Iwaki ◽  
...  
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Clostridium Botulinum ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Foodborne Botulism

ABSTRACT We report here a draft genome sequence of Clostridium botulinum Adk2012 responsible for a foodborne botulism case that occurred in Tottori, Japan, in 2012. Its genome size was 2,904,173 bp, with 46 rRNAs and 54 tRNAs, at a coverage of 14.5×.

scholarly journals Draft Genome Sequence of a Red Basidiomycete Yeast, Symmetrospora coprosmae Strain UCD350, Isolated from Soil in Ireland

2019 ◽  
Vol 8 (44) ◽  
Author(s):  
Jameela Almasoud ◽  
Laoise McArdle ◽  
Ryan Henne ◽  
Karen Mathews ◽  
Ísla O’Connor ◽  
...  
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Red Yeast

Symmetrospora coprosmae is a red yeast from the subphylum Pucciniomycotina in the phylum Basidiomycota. Here, we present the first genome sequence of S. coprosmae strain UCD350, from an isolate collected from soil in Ireland. The genome size is 20.2 Mb.

scholarly journals Draft Genome Report of Bacillus altitudinis SORB11, Isolated from the Indian Sector of the Southern Ocean

2017 ◽  
Vol 5 (23) ◽  
Author(s):  
Urmi Halder ◽  
Aparna Banerjee ◽  
Vasvi Chaudhry ◽  
Rajeev K. Varshney ◽  
Shrikant Mantri ◽  
...  
Keyword(s):  
Southern Ocean ◽  
Uv Radiation ◽  
Genome Sequence ◽  
Draft Genome ◽  
Resistance Mechanism ◽  
Sequence Information ◽  
Content Type ◽  
Bacillus Altitudinis ◽  
Genome Sequence Information ◽  
Indian Sector

ABSTRACT Here, we present the draft genome sequence of Bacillus altitudinis SORB11, which is tolerant to UV radiation. The strain was isolated from the Indian sector of the Southern Ocean at a depth of 3.8 km. The genome sequence information reported here for B. altitudinis SORB11 gives the basis of its UV resistance mechanism and provides data for further comparative studies with other bacteria resistant to UV radiation.

scholarly journals Draft Genome Sequence of Lactobacillus sakei Strain FBL1, a Probiotic Bacterium Isolated from Mukeunji , a Long-Fermented Kimchi, in South Korea

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Jae-Hwan Kim ◽  
Eiseul Kim ◽  
Chang-Gyeom Kim ◽  
Dong-Won Choo ◽  
Hae-Yeong Kim
Keyword(s):  
South Korea ◽  
Genome Size ◽  
Genome Sequence ◽  
Draft Genome ◽  
Probiotic Bacterium ◽  
Draft Genome Sequence ◽  
Lactobacillus Sakei

This report describes the 2,032,158-bp draft genome sequence of Lactobacillus sakei ( L. sakei ) strain FBL1, isolated from mukeunji purchased at the Gwangju World Kimchi Culture Festival in 2012, South Korea. The total draft genome size was 2,032,158 bp with a G+C content of 41.2%.

scholarly journals Draft Genome Sequence of Filamentous Fungus Phialemoniopsis curvata, Isolated from Diesel Fuel

2019 ◽  
Vol 8 (30) ◽  
Author(s):  
Vanessa A. Varaljay ◽  
Wanda J. Lyon ◽  
Audra L. Crouch ◽  
Carrie A. Drake ◽  
Jeffrey M. Hollomon ◽  
...  
Keyword(s):  
Fatty Acid ◽  
Genome Size ◽  
Genome Sequence ◽  
Diesel Fuel ◽  
Filamentous Fungus ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Beta Oxidation ◽  
Content Type

Phialemoniopsis curvata D216 is a filamentous fungus isolated from contaminated diesel fuel. The genome size is 40.3 Mbp with a G+C content of 54.81%. Its genome encodes enzymes and pathways likely involved in the degradation of and survival in fuel, including lipases, fatty acid transporters, and beta oxidation.

scholarly journals Improved De Novo Draft Genome Sequence of the Nocavionin-Producing Type Strain Nocardia terpenica IFM 0706 and Comparative Genomics with the Closely Related Strain Nocardia terpenica IFM 0406

2020 ◽  
Vol 9 (34) ◽  
Author(s):  
Anina Buchmann ◽  
Harald Gross
Keyword(s):  
Comparative Genomics ◽  
Genome Size ◽  
Genome Sequence ◽  
Type Strain ◽  
De Novo ◽  
Draft Genome ◽  
Pathogenic Strain ◽  
Draft Genome Sequence ◽  
Related Strain ◽  
Content Type

ABSTRACT We report an improved de novo draft genome sequence of the human-pathogenic strain Nocardia terpenica IFM 0706T. The resequencing unveiled that the genome size is larger than anticipated, reducing significantly the number of contigs and building a basis for comparison with the closely related strain N. terpenica IFM 0406.

scholarly journals Draft Genome Sequence of Desulfovibrio BerOc1, a Mercury-Methylating Strain

2017 ◽  
Vol 5 (3) ◽  
Author(s):  
Marisol Goñi Urriza ◽  
Claire Gassie ◽  
Oliver Bouchez ◽  
Christophe Klopp ◽  
Rémy Guyoneaud
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Draft Genome ◽  
Mediterranean Coast ◽  
Draft Genome Sequence ◽  
Mercury Methylation ◽  
Sulfate Reducing

ABSTRACT Desulfovibrio BerOc1 is a sulfate-reducing bacterium isolated from the Berre lagoon (French Mediterranean coast). BerOc1 is able to methylate and demethylate mercury. The genome size is 4,081,579 bp assembled into five contigs. We identified the hgcA and hgcB genes involved in mercury methylation, but not those responsible for mercury demethylation.

scholarly journals Draft Genome Sequence of Rummeliibacillus sp. Strain TYF005, a Physiologically Recalcitrant Bacterium with High Ethanol and Salt Tolerance Isolated from Spoilage Vinegar

2019 ◽  
Vol 8 (31) ◽  
Author(s):  
Min Li ◽  
Yao Li ◽  
Xiaojun Fan ◽  
Yuhong Qin ◽  
Yongji He ◽  
...  
Keyword(s):  
Salt Tolerance ◽  
Genome Size ◽  
Genome Sequence ◽  
Draft Genome ◽  
Gc Content ◽  
Thermophilic Bacterium ◽  
Draft Genome Sequence ◽  
Content Type ◽  
High Ethanol

Rummeliibacillus sp. strain TYF005 is a thermophilic bacterium with high ethanol (8% vol/vol) and salt (13% wt/vol) tolerance that was isolated from spoilage vinegar. Here, we report the draft genome sequence of this strain, which has 117 scaffolds with a total genome size of 3.7 Mb and a 34.4% GC content.

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