scholarly journals Draft Genome Report of Bacillus altitudinis SORB11, Isolated from the Indian Sector of the Southern Ocean

2017 ◽  
Vol 5 (23) ◽  
Author(s):  
Urmi Halder ◽  
Aparna Banerjee ◽  
Vasvi Chaudhry ◽  
Rajeev K. Varshney ◽  
Shrikant Mantri ◽  
...  
Keyword(s):  
Southern Ocean ◽  
Uv Radiation ◽  
Genome Sequence ◽  
Draft Genome ◽  
Resistance Mechanism ◽  
Sequence Information ◽  
Content Type ◽  
Bacillus Altitudinis ◽  
Genome Sequence Information ◽  
Indian Sector

ABSTRACT Here, we present the draft genome sequence of Bacillus altitudinis SORB11, which is tolerant to UV radiation. The strain was isolated from the Indian sector of the Southern Ocean at a depth of 3.8 km. The genome sequence information reported here for B. altitudinis SORB11 gives the basis of its UV resistance mechanism and provides data for further comparative studies with other bacteria resistant to UV radiation.

scholarly journals Complete Genome Sequences of Two Mutacin-Producing Streptococcus mutans Strains, T8 and UA140

2020 ◽  
Vol 9 (24) ◽  
Author(s):  
Indranil Biswas
Keyword(s):  
Antimicrobial Peptides ◽  
Streptococcus Mutans ◽  
Genome Sequence ◽  
Complete Genome ◽  
Clinical Isolates ◽  
Sequence Information ◽  
Genome Sequences ◽  
Content Type ◽  
Genome Sequence Information

ABSTRACT Streptococcus mutans is known to produce various antimicrobial peptides called mutacins. Two clinical isolates, T8 and UA140, are well characterized regarding their mutacin production, but genome sequence information was previously unavailable. Complete genome sequences of these two mutacin-producing strains are reported here.

scholarly journals Draft Genome Sequences of Two Novel Sub-Antarctic Williamsia Species

2017 ◽  
Vol 5 (41) ◽  
Author(s):  
Akhikun Nahar ◽  
Anthony L. Baker ◽  
Michael A. Charleston ◽  
John P. Bowman ◽  
Margaret L. Britz
Keyword(s):  
Genome Sequence ◽  
Metabolic Pathways ◽  
Draft Genome ◽  
Illumina Miseq ◽  
Shotgun Sequencing ◽  
Sequence Information ◽  
Sequencing Technology ◽  
Genome Sequences ◽  
Cold Tolerant ◽  
Genome Sequence Information

ABSTRACT Illumina MiSeq shotgun sequencing technology was used to sequence the genomes of two novel sub-Antarctic Williamsia species, designated strains 1135 and 1138. The estimated genome sizes for strains 1135 and 1138 are 5.99 Mb and 6.08 Mb, respectively. This genome sequence information will aid in understanding the lipid metabolic pathways of cold-tolerant Williamsia species.

scholarly journals Draft Genome Sequence of Microbacterium sp. Strain HM58-2, Which Hydrolyzes Acylhydrazides

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Tomonori Akiyama ◽  
Taichiro Ishige ◽  
Yu Kanesaki ◽  
Shinsaku Ito ◽  
Ken-Ichi Oinuma ◽  
...  
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Sequence Information ◽  
Genome Sequence Information ◽  
Ecological Applications

We report the draft genome sequence of Microbacterium sp. strain HM58-2, which produces hydrazidase, an enzyme hydrolyzing acylhydrazides. The estimated genome size is 3.9 Mb. Genome sequence information of this strain will help to identify an assimilating mechanism of nonnatural compounds in this strain and to develop ecological applications.

scholarly journals Complete Genome Sequence of Burkholderia stabilis FERMP-21014

2017 ◽  
Vol 5 (29) ◽  
Author(s):  
Kenji Konishi ◽  
Toshitaka Kumagai ◽  
Shin-ichi Sakasegawa ◽  
Tomohiro Tamura
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Commercial Production ◽  
Cholesterol Esterase ◽  
Sequence Information ◽  
Content Type ◽  
Genome Sequence Information

ABSTRACT Cholesterol esterase (EC 3.1.1.13) was identified in a bacterium, Burkholderia stabilis strain FERMP-21014. Here, we report the complete genome sequence of B. stabilis FERMP-21014, which has been used in the commercial production of cholesterol esterase. The genome sequence information may be useful for improving production levels of cholesterol esterase.

scholarly journals Draft Genome Sequence of Ralstonia solanacearum Strain Rs-T02, Which Represents the Most Prevalent Phylotype in Guangxi, China

2016 ◽  
Vol 4 (2) ◽  
Author(s):  
Chengwu Zou ◽  
Kaihao Wang ◽  
Jiaorong Meng ◽  
Gaoqing Yuan ◽  
Wei Lin ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Ralstonia Solanacearum ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Comparative Genomic ◽  
Sequence Information ◽  
Guangxi Province ◽  
Solanacearum Strain ◽  
Genomic Studies ◽  
Genome Sequence Information

Ralstonia solanacearum strain Rs-T02 was originally isolated from a bacterial wilt of tomato plant in Nanning City of Guangxi Province, China. It represents the most prevalent phylotype in Guangxi. Here, we present the draft genome sequence of this strain, which comprises 5,225 genes and 5,976,011 nucleotides with an average G+C content of 66.79%. There are 968 different genes between this isolate and the previously reported genome sequence of Ralstonia solanacearum GMl l000 (race l, biovar 3, phylotype I), and the genome sequence information of this isolate may be useful for comparative genomic studies to determine the genetic diversity in this species.

scholarly journals Draft Genome Sequence of Bradyrhizobium japonicum Is-1, Which Is Incompatible with Rj 2 Genotype Soybeans

2015 ◽  
Vol 3 (5) ◽  
Author(s):  
Tomoyuki Sakata ◽  
Yu Kanesaki ◽  
Hirofumi Yoshikawa ◽  
Hirohito Tsurumaru ◽  
Takeo Yamakawa
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Bradyrhizobium Japonicum ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Sequence Information ◽  
Causal Gene ◽  
Genome Sequence Information

We report the draft genome sequence of Bradyrhizobium japonicum Is-1, which is incompatible with Rj 2 genotype soybeans. The estimated genome size of this strain is 8.9 Mb. Genome sequence information of this strain will help to identify a causal gene for this incompatibility.

scholarly journals Draft Genome Sequence Resource of Switchgrass Rust Pathogen, Puccinia novopanici Isolate Ard-01

2019 ◽  
Vol 109 (9) ◽  
pp. 1513-1515 ◽  
Author(s):  
Upinder S. Gill ◽  
Raja Sekhar Nandety ◽  
Nick Krom ◽  
Xinbin Dai ◽  
Zhaohong Zhuang ◽  
...  
Keyword(s):  
Disease Resistance ◽  
Genome Sequence ◽  
Plant Disease Resistance ◽  
Fungal Pathogen ◽  
Plant Disease ◽  
Draft Genome ◽  
Sequence Information ◽  
Rust Disease ◽  
Rnaseq Data ◽  
Genome Sequence Information

Puccinia novopanici is an important biotrophic fungal pathogen that causes rust disease in switchgrass. Lack of genomic resources for P. novopanici has hampered the progress toward developing effective disease resistance against this pathogen. Therefore, we have sequenced the whole genome of P. novopanici and generated a framework to understand pathogenicity mechanisms and identify effectors, repeat element invasion, genome evolution, and comparative genomics among Puccinia spp. in the future. Long- and short-read sequences were generated from P. novopanici genomic DNA by PacBio and Illumina technologies, respectively, and assembled a 99.9-Mb genome. Transcripts of P. novopanici were predicted from assembled genome using MAKER and were further validated by RNAseq data. The genome sequence information of P. novopanici will be a valuable resource for researchers working on monocot rusts and plant disease resistance in general.

scholarly journals Draft Genome Sequence of Bacillus altitudinis YNP4-TSU, Isolated from Yellowstone National Park

2017 ◽  
Vol 5 (28) ◽  
Author(s):  
Joshua A. OHair ◽  
Hui Li ◽  
Santosh Thapa ◽  
Matthew Scholz ◽  
Suping Zhou
Keyword(s):  
Genome Sequence ◽  
Yellowstone National Park ◽  
National Park ◽  
Hot Springs ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Bacillus Altitudinis

ABSTRACT Undisturbed hot springs inside Yellowstone National Park remain a dynamic biome for novel cellulolytic thermophiles. We report here the draft genome sequence of one of these isolates, Bacillus altitudinis YNP4-TSU.

scholarly journals Draft Genome Sequence of Plant Growth-Promoting and Drought-Tolerant Bacillus altitudinis FD48, Isolated from Rice Phylloplane

2018 ◽  
Vol 6 (9) ◽  
Author(s):  
Sowmya Kumaravel ◽  
Sugitha Thankappan ◽  
Sridar Raghupathi ◽  
Sivakumar Uthandi
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Total Size ◽  
Content Type ◽  
Bacillus Altitudinis ◽  
Drought Tolerant ◽  
Agricultural Applications ◽  
Plant Growth Promoting ◽  
Growth Promoting ◽  
Genome Information

ABSTRACT The genome sequence of a temperature-tolerant strain, Bacillus altitudinis FD48, is described here. The reads were assembled into contigs with a total size of 3.7 Mb. The genome information will aid in understanding its role in alleviating stress in crop plants as a potential bioinoculant for agricultural applications.

scholarly journals Draft Genome Sequence of Urease-Producing Pseudorhodobacter sp. Strain E13, Isolated from the Yellow Sea in Gunsan, South Korea

2019 ◽  
Vol 8 (23) ◽  
Author(s):  
Si Chul Kim ◽  
Hyo Jung Lee
Keyword(s):  
South Korea ◽  
Genome Sequence ◽  
Yellow Sea ◽  
Draft Genome ◽  
The Yellow Sea ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Coding Sequences ◽  
Gram Negative ◽  
Content Type

Here, we report the draft genome sequence of Pseudorhodobacter sp. strain E13, a Gram-negative, aerobic, nonflagellated, and rod-shaped bacterium which was isolated from the Yellow Sea in South Korea. The assembled genome sequence is 3,878,578 bp long with 3,646 protein-coding sequences in 159 contigs.

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