scholarly journals Draft Genome Sequence of Ralstonia solanacearum Strain Rs-T02, Which Represents the Most Prevalent Phylotype in Guangxi, China

2016 ◽  
Vol 4 (2) ◽  
Author(s):  
Chengwu Zou ◽  
Kaihao Wang ◽  
Jiaorong Meng ◽  
Gaoqing Yuan ◽  
Wei Lin ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Ralstonia Solanacearum ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Comparative Genomic ◽  
Sequence Information ◽  
Guangxi Province ◽  
Solanacearum Strain ◽  
Genomic Studies ◽  
Genome Sequence Information

Ralstonia solanacearum strain Rs-T02 was originally isolated from a bacterial wilt of tomato plant in Nanning City of Guangxi Province, China. It represents the most prevalent phylotype in Guangxi. Here, we present the draft genome sequence of this strain, which comprises 5,225 genes and 5,976,011 nucleotides with an average G+C content of 66.79%. There are 968 different genes between this isolate and the previously reported genome sequence of Ralstonia solanacearum GMl l000 (race l, biovar 3, phylotype I), and the genome sequence information of this isolate may be useful for comparative genomic studies to determine the genetic diversity in this species.

scholarly journals Draft Genome Sequence of Microbacterium sp. Strain HM58-2, Which Hydrolyzes Acylhydrazides

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Tomonori Akiyama ◽  
Taichiro Ishige ◽  
Yu Kanesaki ◽  
Shinsaku Ito ◽  
Ken-Ichi Oinuma ◽  
...  
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Sequence Information ◽  
Genome Sequence Information ◽  
Ecological Applications

We report the draft genome sequence of Microbacterium sp. strain HM58-2, which produces hydrazidase, an enzyme hydrolyzing acylhydrazides. The estimated genome size is 3.9 Mb. Genome sequence information of this strain will help to identify an assimilating mechanism of nonnatural compounds in this strain and to develop ecological applications.

scholarly journals Draft Genome Sequence of Bradyrhizobium japonicum Is-1, Which Is Incompatible with Rj 2 Genotype Soybeans

2015 ◽  
Vol 3 (5) ◽  
Author(s):  
Tomoyuki Sakata ◽  
Yu Kanesaki ◽  
Hirofumi Yoshikawa ◽  
Hirohito Tsurumaru ◽  
Takeo Yamakawa
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Bradyrhizobium Japonicum ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Sequence Information ◽  
Causal Gene ◽  
Genome Sequence Information

We report the draft genome sequence of Bradyrhizobium japonicum Is-1, which is incompatible with Rj 2 genotype soybeans. The estimated genome size of this strain is 8.9 Mb. Genome sequence information of this strain will help to identify a causal gene for this incompatibility.

scholarly journals Draft Genome Sequence of a Metronidazole-ResistantGardnerella vaginalisIsolate

2015 ◽  
Vol 3 (5) ◽  
Author(s):  
Jessica A. Schuyler ◽  
Sean G. Chadwick ◽  
Eli Mordechai ◽  
Martin E. Adelson ◽  
Scott E. Gygax ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Molecular Basis ◽  
Vaginal Discharge ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Gardnerella Vaginalis ◽  
Comparative Genomic ◽  
Common Cause ◽  
Metronidazole Resistance ◽  
Genomic Studies

We report the draft genome sequence of aGardnerella vaginalisstrain (3549624) isolated from a vaginal specimen.G. vaginalisis associated with bacterial vaginosis, the most common cause of vaginal discharge, which is often treated with metronidazole. This isolate is highly resistant to metronidazole (MIC, 500 µg/ml) and may be useful for comparative genomic studies to determine the molecular basis of metronidazole resistance in this species.

scholarly journals Draft Genome Sequence of a 94-Year-Old Listeria monocytogenes Isolate, SLCC208

2016 ◽  
Vol 4 (1) ◽  
Author(s):  
Patrick Hyden ◽  
Ariane Pietzka ◽  
Franz Allerberger ◽  
Burkhard Springer ◽  
Christoph Sensen ◽  
...  
Keyword(s):  
Listeria Monocytogenes ◽  
Genome Sequence ◽  
Draft Genome ◽  
Human Case ◽  
Culture Collection ◽  
Draft Genome Sequence ◽  
Comparative Genomic ◽  
Genomic Studies

We report here the draft genome sequence of Listeria monocytogenes strain SLCC208 from Seeliger’s historical Special Listeria Culture Collection, initially cultured from a human case in France in 1921. This is, to our knowledge, the oldest L. monocytogenes isolate available and may be useful for comparative genomic studies of L. monocytogenes .

scholarly journals Draft Genome Sequence of the Wine Yeast Strain Saccharomyces cerevisiae I-328

2018 ◽  
Vol 6 (5) ◽  
Author(s):  
Andrey V. Mardanov ◽  
Alexey V. Beletsky ◽  
Mikhail A. Eldarov ◽  
Tatiana N. Tanashchuk ◽  
Svetlana A. Kishkovskaya ◽  
...  
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Genome Sequence ◽  
Yeast Strain ◽  
Draft Genome ◽  
Wine Yeast ◽  
Draft Genome Sequence ◽  
Comparative Genomic ◽  
Yeast Strains ◽  
Wine Yeast Strain ◽  
Genomic Studies

ABSTRACT Saccharomyces cerevisiae I-328 is a yeast strain used for production of sherry-like wine in Russia. Here we report the draft genome sequence of this strain, which will facilitate comparative genomic studies of yeast strains used for winemaking.

scholarly journals Draft Genome Sequence of the Dimorphic Fungus Sporothrix pallida , a Nonpathogenic Species Belonging to Sporothrix, a Genus Containing Agents of Human and Feline Sporotrichosis

2016 ◽  
Vol 4 (2) ◽  
Author(s):  
Enrico D’Alessandro ◽  
Domenico Giosa ◽  
Lilin Huang ◽  
Jing Zhang ◽  
Wenchao Gao ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Sporothrix Schenckii ◽  
Draft Genome Sequence ◽  
Comparative Genomic ◽  
Valuable Resource ◽  
Dimorphic Fungus ◽  
Genomic Studies

Sporothrix pallida is considered to be a mostly avirulent environmental fungus, phylogenetically closely related to the well-known pathogen Sporothrix schenckii . Here, we present the first assembly of its genome, which provides a valuable resource for future comparative genomic studies between nonpathogenic and pathogenic Sporothrix spp.

scholarly journals Draft Genome Sequence of Dermatophagoides pteronyssinus, the European House Dust Mite

2017 ◽  
Vol 5 (32) ◽  
Author(s):  
Rose Waldron ◽  
Jamie McGowan ◽  
Natasha Gordon ◽  
Charley McCarthy ◽  
E. Bruce Mitchell ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Gene Prediction ◽  
Draft Genome ◽  
Dermatophagoides Pteronyssinus ◽  
Mite Species ◽  
Draft Genome Sequence ◽  
Comparative Genomic ◽  
Genomic Analyses ◽  
Dust Mite ◽  
Functional Analyses

ABSTRACT Dermatophagoides pteronyssinus is the European dust mite and a major source of human allergens. Here, we present the first draft genome sequence of the mite, as well as the ab initio gene prediction and functional analyses that will facilitate comparative genomic analyses with other mite species.

Draft genome sequence of the silver pomfret fish, Pampus argenteus

Genome ◽  
2016 ◽  
Vol 59 (1) ◽  
pp. 51-58 ◽  
Author(s):  
Sabah AlMomin ◽  
Vinod Kumar ◽  
Sami Al-Amad ◽  
Mohsen Al-Hussaini ◽  
Talal Dashti ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Management Strategies ◽  
Draft Genome ◽  
Gene Clusters ◽  
Draft Genome Sequence ◽  
Pampus Argenteus ◽  
Genomic Studies ◽  
Next Generation Sequencing Ngs ◽  
Generation Sequencing ◽  
Silver Pomfret

Silver pomfret, Pampus argenteus, is a fish species from coastal waters. Despite its high commercial value, this edible fish has not been sequenced. Hence, its genetic and genomic studies have been limited. We report the first draft genome sequence of the silver pomfret obtained using a Next Generation Sequencing (NGS) technology. We assembled 38.7 Gb of nucleotides into scaffolds of 350 Mb with N50 of about 1.5 kb, using high quality paired end reads. These scaffolds represent 63.7% of the estimated silver pomfret genome length. The newly sequenced and assembled genome has 11.06% repetitive DNA regions, and this percentage is comparable to that of the tilapia genome. The genome analysis predicted 16 322 genes. About 91% of these genes showed homology with known proteins. Many gene clusters were annotated to protein and fatty-acid metabolism pathways that may be important in the context of the meat texture and immune system developmental processes. The reference genome can pave the way for the identification of many other genomic features that could improve breeding and population-management strategies, and it can also help characterize the genetic diversity of P. argenteus.

scholarly journals Draft Genome Report of Bacillus altitudinis SORB11, Isolated from the Indian Sector of the Southern Ocean

2017 ◽  
Vol 5 (23) ◽  
Author(s):  
Urmi Halder ◽  
Aparna Banerjee ◽  
Vasvi Chaudhry ◽  
Rajeev K. Varshney ◽  
Shrikant Mantri ◽  
...  
Keyword(s):  
Southern Ocean ◽  
Uv Radiation ◽  
Genome Sequence ◽  
Draft Genome ◽  
Resistance Mechanism ◽  
Sequence Information ◽  
Content Type ◽  
Bacillus Altitudinis ◽  
Genome Sequence Information ◽  
Indian Sector

ABSTRACT Here, we present the draft genome sequence of Bacillus altitudinis SORB11, which is tolerant to UV radiation. The strain was isolated from the Indian sector of the Southern Ocean at a depth of 3.8 km. The genome sequence information reported here for B. altitudinis SORB11 gives the basis of its UV resistance mechanism and provides data for further comparative studies with other bacteria resistant to UV radiation.

scholarly journals Draft Genome Sequences of Two Novel Sub-Antarctic Williamsia Species

2017 ◽  
Vol 5 (41) ◽  
Author(s):  
Akhikun Nahar ◽  
Anthony L. Baker ◽  
Michael A. Charleston ◽  
John P. Bowman ◽  
Margaret L. Britz
Keyword(s):  
Genome Sequence ◽  
Metabolic Pathways ◽  
Draft Genome ◽  
Illumina Miseq ◽  
Shotgun Sequencing ◽  
Sequence Information ◽  
Sequencing Technology ◽  
Genome Sequences ◽  
Cold Tolerant ◽  
Genome Sequence Information

ABSTRACT Illumina MiSeq shotgun sequencing technology was used to sequence the genomes of two novel sub-Antarctic Williamsia species, designated strains 1135 and 1138. The estimated genome sizes for strains 1135 and 1138 are 5.99 Mb and 6.08 Mb, respectively. This genome sequence information will aid in understanding the lipid metabolic pathways of cold-tolerant Williamsia species.

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