scholarly journals Complete Genome Sequence of a Putative Densovirus of the Asian Citrus Psyllid, Diaphorina citri

2016 ◽  
Vol 4 (4) ◽  
Author(s):  
Jared C. Nigg ◽  
Shahideh Nouri ◽  
Bryce W. Falk
Keyword(s):  
Phylogenetic Analysis ◽  
Nucleotide Sequence ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Nucleotide Sequence ◽  
Complete Genome ◽  
Asian Citrus Psyllid ◽  
Diaphorina Citri

Here, we report the complete genome sequence of a putative densovirus of the Asian citrus psyllid, Diaphorina citri . Diaphorina citri densovirus (DcDNV) was originally identified through metagenomics, and here, we obtained the complete nucleotide sequence using PCR-based approaches. Phylogenetic analysis places DcDNV between viruses of the Ambidensovirus and Iteradensovirus genera .

scholarly journals Complete Genome Sequence of the Largest Known Flavi-Like Virus, Diaphorina citri flavi-like virus , a Novel Virus of the Asian Citrus Psyllid, Diaphorina citri

2016 ◽  
Vol 4 (5) ◽  
Author(s):  
Emilyn E. Matsumura ◽  
Luca Nerva ◽  
Jared C. Nigg ◽  
Bryce W. Falk ◽  
Shahideh Nouri
Keyword(s):  
Nucleotide Sequence ◽  
Small Rna ◽  
Complete Genome Sequence ◽  
Genome Organization ◽  
Complete Nucleotide Sequence ◽  
Transcriptome Sequencing ◽  
Asian Citrus Psyllid ◽  
Diaphorina Citri ◽  
Rt Pcr ◽  
Novel Virus

A novel flavi-like virus tentatively named Diaphorina citri flavi-like virus (DcFLV) was identified in field populations of Diaphorina citri through small RNA and transcriptome sequencing followed by reverse transcription (RT)-PCR. We report here the complete nucleotide sequence and genome organization of DcFLV, the largest flavi-like virus identified to date.

scholarly journals Complete Genome Sequence of Algoriphagus sp. Strain M8-2, Isolated from a Brackish Lake

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Yusuke Muraguchi ◽  
Koya Kushimoto ◽  
Yoshiyuki Ohtsubo ◽  
Tomohiro Suzuki ◽  
Hideo Dohra ◽  
...  
Keyword(s):  
Nucleotide Sequence ◽  
Pore Size ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Nucleotide Sequence ◽  
Complete Genome ◽  
Membrane Filter ◽  
Brackish Lake

Algoriphagus sp. strain M8-2 was isolated from a brackish lake, Lake Sanaru, in Hamamatsu, Japan, as a filterable bacterium through a 0.22-µm-pore-size membrane filter. We report here the complete nucleotide sequence of the M8-2 genome (a 3,882,610-bp chromosome).

scholarly journals Complete Genome Sequence of Altererythrobacter sp. Strain B11, an Aromatic Monomer-Degrading Bacterium, Isolated from Deep-Sea Sediment under the Seabed off Kashima, Japan

2018 ◽  
Vol 6 (12) ◽  
Author(s):  
Allyn H. Maeda ◽  
Shinro Nishi ◽  
Shun'ichi Ishii ◽  
Yasuhiro Shimane ◽  
Hideki Kobayashi ◽  
...  
Keyword(s):  
Nucleotide Sequence ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Deep Sea ◽  
Complete Nucleotide Sequence ◽  
Complete Genome ◽  
Content Type ◽  
Deep Sea Sediment ◽  
Degrading Bacterium ◽  
Aromatic Monomer

ABSTRACT Altererythrobacter sp. strain B11 is an aromatic monomer-degrading bacterium newly isolated from sediment under the seabed off Kashima, Japan, at a depth of 2,100 m. Here, we report the complete nucleotide sequence of the genome of strain B11.

scholarly journals Complete Genome Sequence of aGluconacetobacter hanseniiATCC 23769 Isolate, AY201, Producer of Bacterial Cellulose and Important Model Organism for the Study of Cellulose Biosynthesis

2016 ◽  
Vol 4 (4) ◽  
Author(s):  
Sarah Pfeffer ◽  
Kalpa Mehta ◽  
R. Malcolm Brown
Keyword(s):  
Nucleotide Sequence ◽  
Bacterial Cellulose ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Nucleotide Sequence ◽  
Complete Genome ◽  
Model Organism ◽  
Cellulose Biosynthesis ◽  
Gluconacetobacter Hansenii

The cellulose producer and model organism used for the study of cellulose biosynthesis,Gluconacetobacter hanseniiAY201, is a variant ofG. hanseniiATCC 23769. We report here the complete nucleotide sequence ofG. hanseniiAY201, information which may be utilized to further the research into understanding the genes necessary for cellulose biosynthesis.

scholarly journals Complete Genome Sequence of Komagataeibacter hansenii Strain HUM-1

2017 ◽  
Vol 5 (15) ◽  
Author(s):  
Sarah Pfeffer ◽  
Richard Santos ◽  
Marcus Ebels ◽  
Darius Bordbar ◽  
R. Malcolm Brown
Keyword(s):  
Nucleotide Sequence ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Nucleotide Sequence ◽  
Complete Genome ◽  
Cellulose Biosynthesis ◽  
Content Type ◽  
Komagataeibacter Hansenii ◽  
Efficient Producer

ABSTRACT This study reports the release of the complete nucleotide sequence of Komagataeibacter hansenii HUM-1, a new efficient producer of cellulose. Elucidation of the genome may provide more information to aid in understanding the genes necessary for cellulose biosynthesis.

scholarly journals Complete Genome Sequence of Diaphorina citri-associated C virus , a Novel Putative RNA Virus of the Asian Citrus Psyllid, Diaphorina citri

2016 ◽  
Vol 4 (4) ◽  
Author(s):  
Shahideh Nouri ◽  
Nidà Salem ◽  
Bryce W. Falk
Keyword(s):  
Nucleotide Sequence ◽  
Complete Genome Sequence ◽  
Genome Organization ◽  
Complete Nucleotide Sequence ◽  
Rna Virus ◽  
Asian Citrus Psyllid ◽  
Diaphorina Citri ◽  
Rt Pcr ◽  
Reverse Transcription Pcr ◽  
Positive Sense

We present here the complete nucleotide sequence and genome organization of a novel putative RNA virus identified in field populations of the Asian citrus psyllid, Diaphorina citri , through sequencing of the transcriptome followed by reverse transcription-PCR (RT-PCR). We tentatively named this virus Diaphorina citri-associated C virus (DcACV). DcACV is an unclassified positive-sense RNA virus.

scholarly journals Complete Genome Sequence of the Cyanobacterium Anabaena sp. 33047

2016 ◽  
Vol 4 (4) ◽  
Author(s):  
Sarah Pfeffer ◽  
R. Malcolm Brown
Keyword(s):  
Salt Stress ◽  
Nucleotide Sequence ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Nucleotide Sequence ◽  
Complete Genome ◽  
Marine Cyanobacterium ◽  
Cyanobacterium Anabaena ◽  
Anabaena Sp ◽  
Cyanobacterial Diversity

This study presents the complete nucleotide sequence of Anabaena sp. ATCC 33047 ( Anabaena CA), a filamentous, nitrogen-fixing marine cyanobacterium, which under salt stress conditions accumulates sucrose internally. The elucidation of the genome will contribute to the understanding of cyanobacterial diversity.

scholarly journals Complete Genome Sequence of Komagataeibacter hansenii Strain SC-3B

2017 ◽  
Vol 5 (15) ◽  
Author(s):  
Sarah Pfeffer ◽  
Richard Santos ◽  
Marcus Ebels ◽  
Darius Bordbar ◽  
R. Malcolm Brown
Keyword(s):  
Nucleotide Sequence ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Nucleotide Sequence ◽  
Complete Genome ◽  
Cellulose Biosynthesis ◽  
Content Type ◽  
Komagataeibacter Hansenii ◽  
Efficient Producer

ABSTRACT This study reports the release of the complete nucleotide sequence of Komagataeibacter hansenii SC-3B, a new efficient producer of cellulose. Elucidation of the genome may provide more information to aid in understanding the genes necessary for cellulose biosynthesis.

scholarly journals Complete Genome Sequence of Multidrug-Resistant Salmonella enterica Serovar I 4,[5],12:i:− 2015 U.S. Pork Outbreak Isolate USDA15WA-1

2019 ◽  
Vol 8 (40) ◽  
Author(s):  
Bradley L. Bearson ◽  
Julian M. Trachsel ◽  
Devin B. Holman ◽  
Brian W. Brunelle ◽  
Sathesh K. Sivasankaran ◽  
...  
Keyword(s):  
Nucleotide Sequence ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Nucleotide Sequence ◽  
Salmonella Enterica ◽  
Complete Genome ◽  
Genomic Island ◽  
Multidrug Resistant ◽  
Content Type ◽  
Outbreak Isolate

The genome of a multidrug-resistant (MDR) Salmonella enterica subsp. enterica serovar I 4,[5],12:i:− isolate from the 2015 U.S. pork outbreak was sequenced. The complete nucleotide sequence of USDA15WA-1 is 5,031,277 bp, including Salmonella genomic island 4 encoding tolerance to multiple metals and an MDR module inserted in the fljB region.

scholarly journals Complete Genome Sequence of a Putative Densovirus Infecting the Carrot Psyllid Bactericera trigonica

2019 ◽  
Vol 8 (48) ◽  
Author(s):  
Saptarshi Ghosh ◽  
Noa Sela ◽  
Murad Ghanim
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Inverse Pcr ◽  
Asian Citrus Psyllid ◽  
Diaphorina Citri ◽  
Content Type ◽  
Sequence Identity ◽  
Encoded Proteins

Here, we report the genome of a putative densovirus infecting the carrot psyllid Bactericera trigonica, obtained by inverse PCR and named Bactericera trigonica densovirus (BtDNV). The ambisense genome of BtDNV is identical in structure to those of the ambidensoviruses, and its encoded proteins share the highest sequence identity with the Asian citrus psyllid Diaphorina citri densovirus.

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