scholarly journals Draft Genome Sequence of Pasteurella multocida Isolate P1062, Isolated from Bovine Respiratory Disease

2015 ◽  
Vol 3 (5) ◽  
Author(s):  
Juan E. Abrahante ◽  
Samuel S. Hunter ◽  
Samuel K. Maheswaran ◽  
Melissa J. Hauglund ◽  
Fred M. Tatum ◽  
...  
Keyword(s):  
United States ◽  
Respiratory Disease ◽  
Genome Sequence ◽  
Pasteurella Multocida ◽  
Bovine Respiratory Disease ◽  
Draft Genome ◽  
The United States ◽  
Draft Genome Sequence

Here, we report the draft genome of Pasteurella multocida isolate P1062 recovered from pneumonic bovine lung in the United States in 1959.

scholarly journals Genomic Analysis of Xanthomonas oryzae Isolates from Rice Grown in the United States Reveals Substantial Divergence from Known X. oryzae Pathovars

2011 ◽  
Vol 77 (12) ◽  
pp. 3930-3937 ◽  
Author(s):  
L. R. Triplett ◽  
J. P. Hamilton ◽  
C. R. Buell ◽  
N. A. Tisserat ◽  
V. Verdier ◽  
...  
Keyword(s):  
United States ◽  
Genome Sequence ◽  
Draft Genome ◽  
The United States ◽  
Xanthomonas Oryzae ◽  
Draft Genome Sequence ◽  
Diagnostic Tools ◽  
Putative Gene ◽  
Content Type ◽  
The U.S

ABSTRACTThe speciesXanthomonas oryzaeis comprised of two designated pathovars, both of which cause economically significant diseases of rice in Asia and Africa. AlthoughX. oryzaeis not considered endemic in the United States, anX. oryzae-like bacterium was isolated from U.S. rice and southern cutgrass in the late 1980s. The U.S. strains were weakly pathogenic and genetically distinct from characterizedX. oryzaepathovars. In the current study, a draft genome sequence from two U.S.Xanthomonasstrains revealed that the U.S. strains form a novel clade within theX. oryzaespecies, distinct from all strains known to cause significant yield loss. Comparative genome analysis revealed several putative gene clusters specific to the U.S. strains and supported previous reports that the U.S. strains lack transcriptional activator-like (TAL) effectors. In addition to phylogenetic and comparative analyses, the genome sequence was used for designing robust U.S. strain-specific primers, demonstrating the usefulness of a draft genome sequence in the rapid development of diagnostic tools.

scholarly journals Draft Genome Sequence of Mycobacterium virginiense Strain GF75, Isolated from the Mud of a Swine Farm in Japan

2018 ◽  
Vol 6 (17) ◽  
Author(s):  
Toshihiro Ito ◽  
Fumito Maruyama ◽  
Kotaro Sawai ◽  
Keiko Nozaki ◽  
Keiko Otsu ◽  
...  
Keyword(s):  
United States ◽  
Genome Sequence ◽  
Draft Genome ◽  
The United States ◽  
Draft Genome Sequence ◽  
Swine Farm ◽  
Content Type

ABSTRACT Mycobacterium virginiense , a newly described species of the Mycobacterium terrae complex, is a cause of tenosynovitis and osteomyelitis in the United States. Here, we report the 4,849,424-bp draft genome sequence of M. virginiense strain GF75, isolated from a mud sample taken from a Japanese swine farm.

scholarly journals Draft Genome Sequence of the Fish Strain Edwardsiella tarda NCIMB 2034

2017 ◽  
Vol 5 (20) ◽  
Author(s):  
Noemí Buján ◽  
Aide Lasa ◽  
Alicia E. Toranzo ◽  
Beatriz Magariños
Keyword(s):  
United States ◽  
Genome Sequence ◽  
Draft Genome ◽  
The United States ◽  
Edwardsiella Tarda ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes ◽  
Diseased Fish

ABSTRACT Edwardsiella tarda is an important pathogen for fish. The strain NCIMB 2034, obtained from the National Collection of Industrial Food and Marine Bacteria, was isolated from unknown diseased fish in the United States. The draft genome sequence has 3.79 Mb with a G+C content of 57.1% and >3,340 protein-coding genes.

scholarly journals Draft Genome Sequence of Pseudomonas sp. Strain MWU12-2534b, Isolated from a Wild Cranberry Bog in Truro, Massachusetts

2018 ◽  
Vol 7 (13) ◽  
Author(s):  
Ghazal Ebadzadsahrai ◽  
Jonathon Thomson ◽  
Scott Soby
Keyword(s):  
United States ◽  
Genome Sequence ◽  
Draft Genome ◽  
The United States ◽  
Draft Genome Sequence ◽  
Cape Cod ◽  
Pseudomonas Sp ◽  
Content Type ◽  
National Seashore

An unknown Pseudomonas sp. most closely related to Pseudomonas ficuserectae and Pseudomonas protegens was isolated from the rhizospheres of wild cranberry plants in the Cape Cod National Seashore, in the United States.

scholarly journals Draft Genome Sequence of Shiga Toxin-NegativeEscherichia coliO157:H7 Strain C1-057, Isolated from Feedlot Cattle

2016 ◽  
Vol 4 (2) ◽  
Author(s):  
Hua Yang ◽  
Brandon Carlson ◽  
Ifigenia Geornaras ◽  
Dale Woerner ◽  
John Sofos ◽  
...  
Keyword(s):  
United States ◽  
Escherichia Coli ◽  
Genome Sequence ◽  
Foodborne Pathogens ◽  
Shiga Toxin ◽  
Draft Genome ◽  
The United States ◽  
Feedlot Cattle ◽  
Draft Genome Sequence ◽  
E Coli

Escherichia coliO157:H7 is one of the major foodborne pathogens in the United States. We isolated a variant Shiga toxin-negativeE. coliO157:H7 strain from feedlot cattle. We report here the draft genome sequence of this isolate, consisting of a chromosome of ~4.8 Mb and two plasmids of ~96 kb and ~14 kb.

scholarly journals Draft Genome Sequence of a Metronidazole-Susceptible Atopobium vaginae Isolate

2015 ◽  
Vol 3 (5) ◽  
Author(s):  
Jessica A. Schuyler ◽  
Eli Mordechai ◽  
Martin E. Adelson ◽  
Scott E. Gygax ◽  
David W. Hilbert
Keyword(s):  
Genome Sequence ◽  
Molecular Basis ◽  
Draft Genome ◽  
The United States ◽  
Draft Genome Sequence ◽  
Front Line ◽  
Line Therapy ◽  
Metronidazole Resistance ◽  
Susceptible Isolate ◽  
Atopobium Vaginae

We report the draft genome sequence of a vaginal isolate of Atopobium vaginae vaginae (strain 44061), an organism linked to bacterial vaginosis (BV), the most common gynecological infection in the United States. This species is often highly resistant to metronidazole, which is a front-line therapy for BV. Strain 44061 is a metronidazole-susceptible isolate (MIC, 16 µg/ml), and its genome sequence will be useful for comparative studies to elucidate the molecular basis of metronidazole resistance in this species.

scholarly journals Comparative Genomics Analysis of Two Different Virulent Bovine Pasteurella multocida Isolates

2016 ◽  
Vol 2016 ◽  
pp. 1-14 ◽  
Author(s):  
Huihui Du ◽  
Rendong Fang ◽  
Tingting Pan ◽  
Tian Li ◽  
Nengzhang Li ◽  
...  
Keyword(s):  
Comparative Genomics ◽  
Genome Sequence ◽  
Pasteurella Multocida ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Insertion Sequences ◽  
Capsular Type ◽  
Protein Coding ◽  
Protein Coding Genes ◽  
Comparative Genomics Analysis

The Pasteurella multocida capsular type A isolates can cause pneumonia and bovine respiratory disease (BRD). In this study, comparative genomics analysis was carried out to identify the virulence genes in two different virulent P. multocida capsular type A isolates (high virulent PmCQ2 and low virulent PmCQ6). The draft genome sequence of PmCQ2 is 2.32 Mbp and contains 2,002 protein-coding genes, 9 insertion sequence (IS) elements, and 1 prophage region. The draft genome sequence of PmCQ6 is 2.29 Mbp and contains 1,970 protein-coding genes, 2 IS elements, and 3 prophage regions. The genome alignment analysis revealed that the genome similarity between PmCQ2 and PmCQ6 is 99% with high colinearity. To identify the candidate genes responsible for virulence, the PmCQ2 and PmCQ6 were compared together with that of the published genomes of high virulent Pm36950 and PmHN06 and avirulent Pm3480 and Pm70 (capsular type F). Five genes and two insertion sequences are identified in high virulent strains but not in low virulent or avirulent strains. These results indicated that these genes or insertion sequences might be responsible for the virulence of P. multocida, providing prospective candidates for further studies on the pathogenesis and the host-pathogen interactions of P. multocida.

scholarly journals Draft Genome Sequences ofAnaplasma phagocytophilum,A. marginale, andA. ovisIsolates from Different Hosts

2018 ◽  
Vol 6 (5) ◽  
Author(s):  
Sandra Diaz-Sanchez ◽  
Angélica Hernández-Jarguín ◽  
Isabel G. Fernández de Mera ◽  
Pilar Alberdi ◽  
Erich Zweygarth ◽  
...  
Keyword(s):  
United States ◽  
Genome Sequence ◽  
Anaplasma Phagocytophilum ◽  
Draft Genome ◽  
Anaplasma Marginale ◽  
The United States ◽  
Genome Sequences ◽  
Anaplasma Ovis ◽  
First Report

ABSTRACTHere, we report the draft genome sequences of isolates ofAnaplasma phagocytophilum,Anaplasma marginale, andAnaplasma ovis. The genomes ofA. phagocytophilum(human),A. marginale(cattle), andA. ovis(goat) isolates from the United States were sequenced and characterized. This is the first report of anA. ovisgenome sequence.

scholarly journals Complete Genome Sequence of an Influenza D Virus Strain Identified in a Pig with Subclinical Infection in the United States

2019 ◽  
Vol 8 (4) ◽  
Author(s):  
Peter Thielen ◽  
Jacqueline M. Nolting ◽  
Sarah W. Nelson ◽  
Thomas S. Mehoke ◽  
Craig Howser ◽  
...  
Keyword(s):  
United States ◽  
Respiratory Disease ◽  
Genome Sequence ◽  
Virus Strain ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
The United States ◽  
Viral Reservoir ◽  
Subclinical Infection

Influenza D virus was first described in 2011 from a pig with respiratory disease; however, recent evidence indicates that cattle are the major viral reservoir. Here, we describe the genome sequence of the eighth complete swine-origin influenza D virus deposited into GenBank, D/swine/Kentucky/17TOSU1262/2017, which was collected at a 2017 swine exhibition.

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