scholarly journals Draft Genome Sequences of Neptuniibacter sp. Strains LFT 1.8 and ATR 1.1

2017 ◽  
Vol 5 (5) ◽  
Author(s):  
A. L. Diéguez ◽  
J. L. Romalde
Keyword(s):  
Aromatic Compound ◽  
Novel Species ◽  
Draft Genome ◽  
Pecten Maximus ◽  
Genome Sequences ◽  
Aromatic Compound Degradation

ABSTRACT We present the draft genomes of two strains previously identified as Neptuniibacter sp. LFT 1.8 (= CECT 8936 = DSM 100781) and ATR 1.1 (= CECT 8938 = DSM 100783) isolated from larvae of great scallops (Pecten maximus) and seawater, respectively. Both strains surely constitute two novel species in this genus, with putative applications for aromatic compound degradation.

scholarly journals Draft Genome Sequences of Six Bacteria Isolated from the Benham Bank, Philippine Rise, Philippines

2019 ◽  
Vol 8 (29) ◽  
Author(s):  
Saul M. Rojas ◽  
Albert Remus R. Rosana ◽  
Andrew D. Montecillo ◽  
Mark Dondi M. Arboleda ◽  
Hildie Maria E. Nacorda ◽  
...  
Keyword(s):  
Surface Sediments ◽  
Novel Species ◽  
Draft Genome ◽  
Genome Sequences ◽  
Content Type ◽  
Bottom Waters

We report here the draft genome sequences of six bacteria isolated from the near-bottom waters and surface sediments of the Benham Bank, Philippine Rise, Philippines. These genome sequences represent candidate novel species and/or strains from the families Flavobacteriaceae and Dermacoccaceae and the genera Idiomarina, Bacillus, and Vibrio.

scholarly journals Draft Genome Sequence of Labrenzia sp. Strain EL143, a Coral-Associated Alphaproteobacterium with Versatile Symbiotic Living Capability and Strong Halogen Degradation Potential

2018 ◽  
Vol 6 (10) ◽  
Author(s):  
Gisele Nunes Rodrigues ◽  
Asunción Lago-Lestón ◽  
Rodrigo Costa ◽  
Tina Keller-Costa
Keyword(s):  
Heavy Metals ◽  
Aromatic Compound ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Gorgonian Coral ◽  
Toxic Compounds ◽  
Content Type ◽  
Multiple Genes ◽  
Aromatic Compound Degradation

ABSTRACT We report here the genome sequence of Labrenzia sp. EL143, an alphaproteobacterium isolated from the gorgonian coral Eunicella labiata that possesses various genes involved in halogen and aromatic compound degradation, as well as polyketide synthesis. The strain also maintains multiple genes that confer resistance to toxic compounds such as heavy metals and antibiotics.

scholarly journals Draft Genome Sequences of Two Clostridium Isolates from the Poultry Gastrointestinal Tract

2020 ◽  
Vol 9 (22) ◽  
Author(s):  
Jitendra Keshri ◽  
Rocio Ramirez ◽  
Raja Chalghoumi ◽  
Johnna K. Garrish ◽  
Bruce S. Seal ◽  
...  
Keyword(s):  
Gastrointestinal Tract ◽  
Broiler Chickens ◽  
Novel Species ◽  
Draft Genome ◽  
Genome Sequences ◽  
Commercial Broiler

ABSTRACT Here, we announce the draft genome sequences of two Clostridium strains, C8-1-8 and C2-6-12, isolated from the cecal contents of commercial broiler chickens (in Athens, GA). These strains may represent potentially novel species within the genus Clostridium, and these draft genomes allow further investigation into potential probiotics for poultry.

scholarly journals Draft Genome Sequences for Five Strains ofTrabulsiella odontotermitis, Isolated fromHeterotermessp. Termite Gut: TABLE 1 

2015 ◽  
Vol 3 (6) ◽  
Author(s):  
Myrna Olvera-García ◽  
Héctor Fontes-Perez ◽  
America Chávez-Martínez ◽  
Oscar Ruiz Barrera ◽  
Felipe A. Rodríguez-Almeida ◽  
...  
Keyword(s):  
Complete Genome ◽  
Novel Species ◽  
Cellulose Degradation ◽  
Draft Genome ◽  
Biotechnological Application ◽  
Genome Sequences ◽  
The North ◽  
Termite Gut

Trabulsiella odontotermitisrepresents a novel species in the genusTrabulsiellawith no complete genome reported yet. Here, we describe the draft genome sequences of five isolates from termites present in the north of Mexico, which have an interesting pool of genes related to cellulose degradation with biotechnological application.

scholarly journals Draft Genome Sequence of Comamonas testosteroni R2, Consisting of Aromatic Compound Degradation Genes for Phenol Hydroxylase

2017 ◽  
Vol 5 (36) ◽  
Author(s):  
Fatma Azwani ◽  
Kenshi Suzuki ◽  
Masahiro Honjyo ◽  
Yosuke Tashiro ◽  
Hiroyuki Futamata
Keyword(s):  
Continuous Culture ◽  
Gene Cluster ◽  
Aromatic Compound ◽  
Genome Sequence ◽  
Phenol Degradation ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Comamonas Testosteroni ◽  
Content Type ◽  
Aromatic Compound Degradation

ABSTRACT Comamonas testosteroni strain R2 was isolated from a continuous culture enriched by a low concentration of phenol-oxygenating activities with low K s values (below 1 μM). The draft genome sequence of C. testosteroni strain R2 reported here may contribute to determining the phenol degradation gene cluster.

scholarly journals Draft Genome Sequences of Legionella Presumptive Novel Species Isolated during Environmental Surveillance in Artificial Water Systems

2021 ◽  
Vol 10 (19) ◽  
Author(s):  
Luna Girolamini ◽  
Silvano Salaris ◽  
Massimiliano Orsini ◽  
Maria Rosaria Pascale ◽  
Marta Mazzotta ◽  
...  
Keyword(s):  
Distribution System ◽  
Water Distribution ◽  
Water Distribution System ◽  
Novel Species ◽  
Draft Genome ◽  
Environmental Surveillance ◽  
Genome Sequences ◽  
Macrophage Infectivity Potentiator ◽  
Artificial Water ◽  
Macrophage Infectivity

ABSTRACT We present the draft genome sequences of three Legionella strains that were isolated from a hotel water distribution system. Legionella species identification was performed by macrophage infectivity potentiator (mip) and RNA polymerase β subunit (rpoB) gene sequencing. Whole-genome sequencing and average nucleotide identity results supported the hypothesis of new Legionella species isolation.

scholarly journals Draft Genome Sequences of Two Potentially Novel Bacillus Isolates from Backyard and Commercial Chicken Gastrointestinal Tracts

2020 ◽  
Vol 9 (22) ◽  
Author(s):  
Jitendra Keshri ◽  
Rocio Ramirez ◽  
Mark E. Berrang ◽  
Brian B. Oakley
Keyword(s):  
Broiler Chickens ◽  
Novel Species ◽  
Draft Genome ◽  
Gi Tract ◽  
Genome Sequences ◽  
Commercial Chicken ◽  
Commercial Broiler

ABSTRACT Here, we present the draft genome sequences of two Bacillus strains, HF117_J1_D and USDA818B3_A, isolated in Pomona, California, from the gastrointestinal (GI) tract of backyard and commercial broiler chickens, respectively. The draft genomes of both strains appear to represent novel species.

scholarly journals Draft Genome Sequences of Strains TRE 1, TRE D, TRE H, and TRI 7, Isolated from Tamarins and Belonging to Four Putative Novel Bifidobacterium Species

2018 ◽  
Vol 6 (3) ◽  
Author(s):  
Edoardo Puglisi ◽  
Paola Mattarelli ◽  
Monica Modesto ◽  
Andrea Bonetti ◽  
Caterina Spiezio ◽  
...  
Keyword(s):  
Novel Species ◽  
Draft Genome ◽  
Genome Sequences ◽  
Bifidobacterium Species ◽  
Zoological Park ◽  
Gc Contents

ABSTRACT Bifidobacterium sp. strains TRE 1, TRE D, TRE H, and TRI 7 were isolated from two tamarins housed in Parco Natura Viva, Garda Zoological Park S.r.l. (Bussolengo, Verona, Italy). These strains belong to four putative novel species of the genus Bifidobacterium . The genome sizes were 2.7 Mb for TRE 1, 2.7 Mb for TRE D, 2.4 Mb for TRE H, and 2.7 Mb for TRI 7. The average GC contents were 63.18% for TRE 1, 58.27% for TRE D, 57.11% for TRE H, and 63.79% for TRI 7.

scholarly journals Draft Genome Sequences of the Type Strains of Three Clavibacter Subspecies and Atypical Peach-Colored Strains Isolated from Tomato

2018 ◽  
Vol 7 (18) ◽  
Author(s):  
Ebrahim Osdaghi ◽  
Perrine Portier ◽  
Martial Briand ◽  
Géraldine Taghouti ◽  
Marie-Agnes Jacques
Keyword(s):  
Novel Species ◽  
Draft Genome ◽  
Clavibacter Michiganensis ◽  
Genome Sequences ◽  
Content Type ◽  
Type Strains

Here, we present the draft genome sequences of 10 Clavibacter sp. strains, including the type strains of different subspecies of Clavibacter michiganensis and a potentially novel species within the genus.

scholarly journals Genomic Aromatic Compound Degradation Potential of Novel Paraburkholderia Species: Paraburkholderia domus sp. nov., Paraburkholderia haematera sp. nov. and Paraburkholderia nemoris sp. nov.

2021 ◽  
Vol 22 (13) ◽  
pp. 7003
Author(s):  
Sarah Vanwijnsberghe ◽  
Charlotte Peeters ◽  
Emmelie De Ridder ◽  
Charles Dumolin ◽  
Anneleen D. Wieme ◽  
...  
Keyword(s):  
Forest Soil ◽  
Aromatic Compound ◽  
Aromatic Compounds ◽  
Type Strain ◽  
Novel Species ◽  
Plant Litter ◽  
Reca Gene ◽  
Phylogenomic Analysis ◽  
Aromatic Compound Degradation ◽  
Synergistic Relationships

We performed a taxonomic and comparative genomics analysis of 67 novel Paraburkholderia isolates from forest soil. Phylogenetic analysis of the recA gene revealed that these isolates formed a coherent lineage within the genus Paraburkholderia that also included Paraburkholderiaaspalathi, Paraburkholderiamadseniana, Paraburkholderiasediminicola, Paraburkholderiacaffeinilytica, Paraburkholderiasolitsugae and Paraburkholderiaelongata and four unidentified soil isolates from earlier studies. A phylogenomic analysis, along with orthoANIu and digital DNA–DNA hybridization calculations revealed that they represented four different species including three novel species and P. aspalathi. Functional genome annotation of the strains revealed several pathways for aromatic compound degradation and the presence of mono- and dioxygenases involved in the degradation of the lignin-derived compounds ferulic acid and p-coumaric acid. This co-occurrence of multiple Paraburkholderia strains and species with the capacity to degrade aromatic compounds in pristine forest soil is likely caused by the abundant presence of aromatic compounds in decomposing plant litter and may highlight a diversity in micro-habitats or be indicative of synergistic relationships. We propose to classify the isolates representing novel species as Paraburkholderia domus with LMG 31832T (=CECT 30334) as the type strain, Paraburkholderia nemoris with LMG 31836T (=CECT 30335) as the type strain and Paraburkholderia haematera with LMG 31837T (=CECT 30336) as the type strain and provide an emended description of Paraburkholderia sediminicola Lim et al. 2008.

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