scholarly journals Complete Genome Sequence of Pseudomonas brassicacearum LBUM300, a Disease-Suppressive Bacterium with Antagonistic Activity toward Fungal, Oomycete, and Bacterial Plant Pathogens

2016 ◽  
Vol 4 (1) ◽  
Author(s):  
Amy Novinscak ◽  
Vijay J. Gadkar ◽  
David L. Joly ◽  
Martin Filion
Keyword(s):  
Genome Sequence ◽  
Verticillium Dahliae ◽  
Hydrogen Cyanide ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Plant Pathogens ◽  
Antagonistic Activity ◽  
Phytophthora Cactorum ◽  
Clavibacter Michiganensis ◽  
Pseudomonas Brassicacearum

Pseudomonas brassicacearum LBUM300, a plant rhizosphere-inhabiting bacterium, produces 2,4-diacetylphloroglucinol and hydrogen cyanide and has shown antagonistic activity against the plant pathogens Verticillium dahliae , Phytophthora cactorum , and Clavibacter michiganensis subsp. michiganensis . Here, we report the complete genome sequence of P. brassicacearum LBUM300.

scholarly journals A Rare Thioquinolobactin Siderophore Present in a Bioactive Pseudomonas sp. DTU12.1

2019 ◽  
Vol 11 (12) ◽  
pp. 3529-3533
Author(s):  
Pavelas Sazinas ◽  
Morten Lindqvist Hansen ◽  
May Iren Aune ◽  
Marie Højmark Fischer ◽  
Lars Jelsbak
Keyword(s):  
Gene Cluster ◽  
Secondary Metabolite ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Plant Pathogens ◽  
Gene Clusters ◽  
Fungal Species ◽  
Antagonistic Activity ◽  
Evolutionary Origins

Abstract Many of the soil-dwelling Pseudomonas species are known to produce secondary metabolite compounds, which can have antagonistic activity against other microorganisms, including important plant pathogens. It is thus of importance to isolate new strains of Pseudomonas and discover novel or rare gene clusters encoding bioactive products. In an effort to accomplish this, we have isolated a bioactive Pseudomonas strain DTU12.1 from leaf-covered soil in Denmark. Following genome sequencing with Illumina and Oxford Nanopore technologies, we generated a complete genome sequence with the length of 5,943,629 base pairs. The DTU12.1 strain contained a complete gene cluster for a rare thioquinolobactin siderophore, which was previously described as possessing bioactivity against oomycetes and several fungal species. We placed the DTU12.1 strain within Pseudomonas gessardii subgroup of fluorescent pseudomonads, where it formed a distinct clade with other Pseudomonas strains, most of which also contained a complete thioquinolobactin gene cluster. Only two other Pseudomonas strains were found to contain the gene cluster, though they were present in a different phylogenetic clade and were missing a transcriptional regulator of the whole cluster. We show that having the complete genome sequence and establishing phylogenetic relationships with other strains can enable us to start evaluating the distribution and evolutionary origins of secondary metabolite clusters.

scholarly journals Complete Genome Sequence of the Biocontrol Agent YeastRhodotorula kratochvilovaeStrain LS11

2018 ◽  
Vol 6 (10) ◽  
Author(s):  
Cecilia Miccoli ◽  
Davide Palmieri ◽  
Filippo De Curtis ◽  
Giuseppe Lima ◽  
Giuseppe Ianiri ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Complete Genome Sequence ◽  
Genome Annotation ◽  
Complete Genome ◽  
Plant Pathogens ◽  
Biocontrol Agent ◽  
Antagonistic Activity ◽  
Protein Encoding ◽  
Encoding Genes

ABSTRACTRhodotorula kratochvilovaestrain LS11 is a biocontrol agent (BCA) selected for its antagonistic activity against several plant pathogens both in the field and postharvest. Genome assembly includes 62 contigs for a total of 22.56 Mbp and a G+C content of 66.6%. Genome annotation predicts 7,642 protein-encoding genes.

Complete genome sequence of the cellulase-producing bacterium Clavibacter michiganensis PF008

2015 ◽  
Vol 214 ◽  
pp. 103-104 ◽  
Author(s):  
Chungyun Bae ◽  
Eom-Ji Oh ◽  
Han-Beoyl Lee ◽  
Byung-Yong Kim ◽  
Chang-Sik Oh
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Clavibacter Michiganensis

Complete genome sequence of Bacillus velezensis G341, a strain with a broad inhibitory spectrum against plant pathogens

2015 ◽  
Vol 211 ◽  
pp. 97-98 ◽  
Author(s):  
Hyun-Hee Lee ◽  
Jungwook Park ◽  
Jae Yun Lim ◽  
Hun Kim ◽  
Gyung Ja Choi ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Plant Pathogens ◽  
Bacillus Velezensis ◽  
Inhibitory Spectrum

scholarly journals Complete Genome Sequence of Bacillus velezensis L-1, Which Has Antagonistic Activity against Pear Diseases

2017 ◽  
Vol 5 (48) ◽  
Author(s):  
Pingping Sun ◽  
Jianchao Cui ◽  
Xiaohui Jia ◽  
Wenhui Wang
Keyword(s):  
Secondary Metabolites ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Biocontrol Agent ◽  
Antagonistic Activity ◽  
Bacillus Velezensis ◽  
Content Type

ABSTRACT Bacillus velezensis L-1 is an effective biocontrol agent against pear diseases. Here, we report the complete genome sequence of B. velezensis L-1 in which clusters related to the biosynthesis of secondary metabolites were predicted. This genome provides insights into the possible biocontrol mechanisms and furthers application of this specific bacterium.

scholarly journals Complete Genome Sequence of Pseudomonas sp. Strain SK, Isolated from Organic Wheat Rhizosphere

2020 ◽  
Vol 9 (26) ◽  
Author(s):  
Shivani Khatri ◽  
Pavelas Sazinas ◽  
Yashbir S. Shivay ◽  
Shilpi Sharma ◽  
Lars Jelsbak
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Plant Pathogens ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Pseudomonas Sp ◽  
Wheat Rhizosphere ◽  
Soilborne Plant Pathogens ◽  
Biocontrol Activity

ABSTRACT Here, we report the annotated whole-genome sequence of Pseudomonas sp. strain SK, isolated in India from organic wheat rhizosphere. This strain has proved to be a species with potential biocontrol activity against soilborne plant pathogens based on antiSMASH analysis.

Sign in / Sign up

Export Citation Format

Share Document