scholarly journals Complete genome sequence of Pseudomonas brassicacearum strain L13-6-12, a biological control agent from the rhizosphere of potato

2017 ◽  
Vol 12 (1) ◽  
Author(s):  
Christin Zachow ◽  
Henry Müller ◽  
Jana Monk ◽  
Gabriele Berg
2020 ◽  
Vol 33 (12) ◽  
pp. 1451-1453
Author(s):  
Yoshiteru Noutoshi ◽  
Atsushi Toyoda ◽  
Tomoya Ishii ◽  
Kirara Saito ◽  
Megumi Watanabe ◽  
...  

Crown gall disease in grapevine is caused by pathogenic strains of Rhizobium vitis with a tumor-inducing (Ti) plasmids. A nonpathogenic strain, VAR03-1 of R. vitis, has been isolated from the grapevine root of nursery stock and it was shown to act as a biological control agent to crown gall disease. Its disease-suppressive effect was observed even when it was coinoculated with the pathogen in a 1:1 ratio. Here, we present the complete genome data of R. vitis VAR03-1, assembled by sequencing reads obtained by both PacBio and Illumina technologies with annotation. This genome sequence could contribute to investigations of the molecular basis underlying the biocontrol activity as well as the root-colonization ability of this bacterial strain. [Formula: see text] Copyright © 2020 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license .


Author(s):  
Shun Feng ◽  
Yongfei Jian ◽  
Liang Jin ◽  
Shicai Tang ◽  
Zhengguo Li

A rare actinomycetes strain of Saccharothrix texasensis strain 6-C, has been isolated from the potato rhizosphere and it was shown to act as a biological control agent to potato late blight. It is also the first report on Saccharothrix inhibiting P. infestans. Here, we present the complete genome data of S. texasensis strain 6-C, assembled by sequencing reads obtained by both PacBio and Illumina technologies with annotation. The final assembled genome length is 9,045,220 bp, with no gaps, no plasmid, and its GC content is 72.39%. Nine non-ribosomal peptide synthetase (NRPS), five type I polyketide synthase (T1PKS), four terpene and three lanthipeptide gene clusters were identified in the genome, which would be likely to encode lots of antimicrobial active substances to help host plants against disease. This genome sequence could contribute to investigations of the molecular basis underlying the biocontrol activity of this Saccharothrix strain.


2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Alejandra Hernández-Santana ◽  
Camilo Gómez-Garzón ◽  
Jenny Dussán

Lysinibacillus sphaericusis a species that contains strains widely used in the biological control of mosquitoes. Here, we present the complete 4.67-Mb genome of the WHO entomopathogenic reference strainL. sphaericus2362, which is probably one of the most commercialized and studied strains. Genes coding for mosquitocidal toxin proteins were detected.


2017 ◽  
Vol 5 (12) ◽  
Author(s):  
Sandeep K. Kushwaha ◽  
Ramesh R. Vetukuri ◽  
Laura J. Grenville-Briggs

ABSTRACT The oomycete Pythium periplocum is an aggressive mycoparasite of a number of plant pathogenic fungi and oomycetes and therefore has potential as a biological control agent. Here, we report the first draft genome sequence of P. periplocum, which comprises 35.89 Mb. It contains 1,043 scaffolds and 14,399 predicted protein-coding genes.


2011 ◽  
Vol 193 (12) ◽  
pp. 3146-3146 ◽  
Author(s):  
P. Ortet ◽  
M. Barakat ◽  
D. Lalaouna ◽  
S. Fochesato ◽  
V. Barbe ◽  
...  

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Andrea G. Albarracín Orio ◽  
Romina A. Tobares ◽  
Daniel A. Ducasse ◽  
Andrea M. Smania

Bacillus subtilis is a nonpathogenic bacterium that lives in soil and has long been used as biological control agent in agriculture. Here, we report the genome sequence of a B. subtilis strain isolated from rhizosphere of onion that shows strong biological activity against the soilborne fungal pathogen Setophoma terrestris .


2021 ◽  
Vol 10 (45) ◽  
Author(s):  
D. V. Poshvina ◽  
A. V. Vasilchenko ◽  
A. S. Vasilchenko

Here, we announce and describe the draft genome sequence of Pseudomonas brassicacearum UTMN3, which contains 40 contigs comprising 6,658,810 bp, with a GC content of 60.9%. The genome contains 5,825 protein-coding genes and 65 RNA-coding genes. The genome of UTMN3 contains several genes that are likely contributors to plant protection.


2020 ◽  
Vol 9 (16) ◽  
Author(s):  
Xiaobing Wang ◽  
Mengfei Wang ◽  
Danyan Tang ◽  
Wei Wang

We report the complete genome sequence of Pseudomonas protegens SN15-2, which was isolated from the rhizosphere of tomato roots in Shanghai, China, and can be used in the biological control of phytopathogens. This annotated version will be the basis for upcoming genomic studies.


2017 ◽  
Vol 5 (21) ◽  
Author(s):  
Sandeep K. Kushwaha ◽  
Ramesh R. Vetukuri ◽  
Laura J. Grenville-Briggs

ABSTRACT The oomycete Pythium oligandrum is a mycoparasite and licenced biological control agent. Here, we report the draft genome sequence of P. oligandrum strain CBS 530.74, which is 36.80 Mb. It contains 341 scaffolds and 11,647 predicted protein-coding genes. As reported for plant-pathogenic Pythium species, RXLR-type effector sequences are absent.


Sign in / Sign up

Export Citation Format

Share Document