Homology dependence of targeted recombination at the Chinese hamster APRT locus

1994 ◽  
Vol 14 (10) ◽  
pp. 6663-6673
Author(s):  
J B Scheerer ◽  
G M Adair
Keyword(s):  
Homologous Recombination ◽  
Sequence Homology ◽  
Chinese Hamster Ovary ◽  
Target Gene ◽  
Gene Deletion ◽  
Chinese Hamster ◽  
Adenine Phosphoribosyltransferase ◽  
Aprt Gene ◽  
Logarithmic Relationship ◽  
Targeted Recombination

Using simple linear fragments of the Chinese hamster adenine phosphoribosyltransferase (APRT) gene as targeting vectors, we have investigated the homology dependence of targeted recombination at the endogenous APRT locus in Chinese hamster ovary (CHO) cells. We have examined the effects of varying either the overall length of targeting sequence homology or the length of 5' or 3' flanking homology on both the frequency of targeted homologous recombination and the types of recombination events that are obtained. We find an exponential (logarithmic) relationship between length of APRT targeting homology and the frequency of targeted recombination at the CHO APRT locus, with the frequency of targeted recombination dependent upon both the overall length of targeting homology and the length of homology flanking each side of the target gene deletion. Although most of the APRT+ recombinants analyzed reflect simple targeted replacement or conversion of the target gene deletion, a significant fraction appear to have arisen by target gene-templated extension and correction of the targeting fragment sequences. APRT fragments with limited targeting homology flanking one side of the target gene deletion yield proportionately fewer target gene conversion events and proportionately more templated extension and vector correction events than do fragments with more substantial flanking homology.

scholarly journals Homology dependence of targeted recombination at the Chinese hamster APRT locus.

1994 ◽  
Vol 14 (10) ◽  
pp. 6663-6673 ◽  
Author(s):  
J B Scheerer ◽  
G M Adair
Keyword(s):  
Homologous Recombination ◽  
Sequence Homology ◽  
Chinese Hamster Ovary ◽  
Target Gene ◽  
Gene Deletion ◽  
Chinese Hamster ◽  
Adenine Phosphoribosyltransferase ◽  
Aprt Gene ◽  
Logarithmic Relationship ◽  
Targeted Recombination

Using simple linear fragments of the Chinese hamster adenine phosphoribosyltransferase (APRT) gene as targeting vectors, we have investigated the homology dependence of targeted recombination at the endogenous APRT locus in Chinese hamster ovary (CHO) cells. We have examined the effects of varying either the overall length of targeting sequence homology or the length of 5' or 3' flanking homology on both the frequency of targeted homologous recombination and the types of recombination events that are obtained. We find an exponential (logarithmic) relationship between length of APRT targeting homology and the frequency of targeted recombination at the CHO APRT locus, with the frequency of targeted recombination dependent upon both the overall length of targeting homology and the length of homology flanking each side of the target gene deletion. Although most of the APRT+ recombinants analyzed reflect simple targeted replacement or conversion of the target gene deletion, a significant fraction appear to have arisen by target gene-templated extension and correction of the targeting fragment sequences. APRT fragments with limited targeting homology flanking one side of the target gene deletion yield proportionately fewer target gene conversion events and proportionately more templated extension and vector correction events than do fragments with more substantial flanking homology.

scholarly journals Genetic effects of chromosomal rearrangements in Chinese hamster ovary cells: expression and chromosomal assignment of TK, GALK, ACP1, ADA, and ITPA loci.

1983 ◽  
Vol 3 (11) ◽  
pp. 1967-1974 ◽  
Author(s):  
R L Stallings ◽  
G M Adair ◽  
J Siciliano ◽  
J Greenspan ◽  
M J Siciliano
Keyword(s):  
Polyethylene Glycol ◽  
Chinese Hamster Ovary ◽  
Gene Deletion ◽  
Chinese Hamster Ovary Cells ◽  
Chromosomal Rearrangements ◽  
Chinese Hamster ◽  
Chromosome 7 ◽  
Chromosomal Assignment ◽  
Somatic Cell Hybrids ◽  
Ovary Cells

Polyethylene glycol-mediated fusion of Chinese hamster ovary (CHO) cells with mouse Cl1D cells produced interspecific somatic cell hybrids which slowly segregated CHO chromosomes. Cytogenetic and isozyme analysis of HAT- and bromodeoxyuridine-selected hybrid subclones and of members of a hybrid clone panel retaining different combinations of CHO chromosomes enabled provisional assignments of the following enzyme loci to CHO chromosomes: TK, GALK, and ACP1 to chromosome 7; TK and GALK to chromosome Z13; ACP1, ADA, and ITPA to chromosome Z8; and ADA and ITPA to chromosome Z9. These genetic markers reflect the origin of each of these Z group chromosomes and indicate the functional activity of alleles located on rearranged chromosomes. Identification of diploid electrophoretic shift mutations for ADA and ITPA was consistent with those observations. Assignment of the functional TK locus in TK+/- CHO-AT3-2 cells indicated that gene deletion may be responsible for TK hemizygosity in this subline.

scholarly journals Genetic instability at the adenine phosphoribosyltransferase locus in mouse L cells.

1982 ◽  
Vol 2 (3) ◽  
pp. 250-257 ◽  
Author(s):  
J A Tischfield ◽  
J J Trill ◽  
Y I Lee ◽  
K Coy ◽  
M W Taylor
Keyword(s):  
Chinese Hamster Ovary ◽  
Hot Spot ◽  
Chinese Hamster Ovary Cells ◽  
Human Fibroblasts ◽  
Chinese Hamster ◽  
Ovary Cell ◽  
Adenine Phosphoribosyltransferase ◽  
Ovary Cells ◽  
L Cells ◽  
A Site

Resistance to adenine analogs such as 2,6-diaminopurine occurs at a rate of approximately 10(-3) per cell per generation in mouse L cells. This resistance is associated with a loss of detectable adenine phosphoribosyltransferase activity. Other genetic loci in L cells have the expected mutation frequency (approximately 10(-6)). Transformation of L cell mutants with Chinese hamster ovary cell DNA results in transformants with adenine phosphoribosyltransferase activity characteristic of Chinese hamster ovary cells. No activation of the mouse gene occurs on hybridization with human fibroblasts. That this high frequency event is the result of mutation rather than an epigenetic event is supported by antigenic and reversion studies of the 2,6-diaminopurine-resistant clones. These results are consistent with either a mutational hot-spot, a locus specific mutator gene, or a site of integration of an insertion sequence.

Genetic instability at the adenine phosphoribosyltransferase locus in mouse L cells

1982 ◽  
Vol 2 (3) ◽  
pp. 250-257
Author(s):  
J A Tischfield ◽  
J J Trill ◽  
Y I Lee ◽  
K Coy ◽  
M W Taylor
Keyword(s):  
Chinese Hamster Ovary ◽  
Hot Spot ◽  
Chinese Hamster Ovary Cells ◽  
Human Fibroblasts ◽  
Chinese Hamster ◽  
Ovary Cell ◽  
Adenine Phosphoribosyltransferase ◽  
Ovary Cells ◽  
L Cells ◽  
A Site

Resistance to adenine analogs such as 2,6-diaminopurine occurs at a rate of approximately 10(-3) per cell per generation in mouse L cells. This resistance is associated with a loss of detectable adenine phosphoribosyltransferase activity. Other genetic loci in L cells have the expected mutation frequency (approximately 10(-6)). Transformation of L cell mutants with Chinese hamster ovary cell DNA results in transformants with adenine phosphoribosyltransferase activity characteristic of Chinese hamster ovary cells. No activation of the mouse gene occurs on hybridization with human fibroblasts. That this high frequency event is the result of mutation rather than an epigenetic event is supported by antigenic and reversion studies of the 2,6-diaminopurine-resistant clones. These results are consistent with either a mutational hot-spot, a locus specific mutator gene, or a site of integration of an insertion sequence.

scholarly journals Effects of nonsense mutations on nuclear and cytoplasmic adenine phosphoribosyltransferase RNA.

1996 ◽  
Vol 16 (8) ◽  
pp. 4426-4435 ◽  
Author(s):  
O Kessler ◽  
L A Chasin
Keyword(s):  
Steady State ◽  
Actinomycin D ◽  
Chinese Hamster ◽  
Nuclear Pore ◽  
Mrna Levels ◽  
Wild Type ◽  
Adenine Phosphoribosyltransferase ◽  
Aprt Gene ◽  
Steady State Levels ◽  
Nonsense Codons

We have analyzed Chinese hamster ovary (CHO) cell mutants bearing nonsense codons in four of the five exons of the adenine phosphoribosyltransferase (aprt) gene and have found a pattern of mRNA reduction similar to that seen in systems studied previously: a decrease in steady-state mRNA levels of 5- to 10-fold for mutations in exons 1, 2, and 4 but little effect for mutations in the 3'-most exon (exon 5). Nuclear aprt mRNA levels showed a similar decrease. Nonsense-containing aprt mRNA decayed at the same rate as wild-type mRNA in these cell lines after inhibition of transcription with actinomycin D. Nonsense-containing aprt mRNA is associated with polysomes, ruling out a model in which stable residual mRNA escapes degradation by avoiding translation initiation. A tetracycline-responsive form of the aprt gene was used to compare the stability of nonsense-containing and wild-type aprt mRNAs without globally inhibiting transcription. In contrast to measurements made in the presence of actinomycin D, after inhibition of aprt transcription with tetracycline, a nonsense-mediated destabilization of aprt mRNA was indeed demonstrable. The increased rate of decay of cytoplasmic aprt mRNA seen here could account for the nonsense-mediated reduction in steady-state levels of aprt mRNA. However, the low levels of nonsense-bearing aprt mRNA in the nucleus suggest a sensibility of mRNA to translation or translatability before it exits that compartment. Quantitation of the steady-state levels of transcripts containing introns revealed no accumulation of partially spliced aprt RNA and hence no indication of nonsense-mediated aberrancies in splicing. Our results are consistent with a model in which translation facilitates the export of mRNA through a nuclear pore. However, the mechanism of this intriguing nucleocytoplasmic communication remains to be determined.

scholarly journals Gene Silencing by DNA Methylation and Dual Inheritance in Chinese Hamster Ovary Cells

Genetics ◽  
1998 ◽  
Vol 149 (2) ◽  
pp. 1081-1088
Author(s):  
R P Paulin ◽  
T Ho ◽  
H J Balzer ◽  
R Holliday
Keyword(s):  
Chinese Hamster Ovary ◽  
Cho Cells ◽  
Chinese Hamster Ovary Cells ◽  
Chinese Hamster ◽  
Methylation Pattern ◽  
Pcr Cloning ◽  
Ovary Cells ◽  
Gene Copies ◽  
Aprt Gene ◽  
Dual Inheritance

Abstract Chinese hamster ovary (CHO) cells strain D422, which has one copy of the adenine phosphoribosyl transferase (APRT) gene, were permeabilized by electroporation and treated with 5-methyl deoxycytidine triphosphate. Cells with a silenced APRT gene were selected on 2, 6-diaminopurine. Colonies were isolated and shown to be reactivated to APRT+ by 5-aza-cytidine and by selection in medium containing adenine, aminopterin and thymidine. Genomic DNA was prepared from eight isolates of independent origin and subjected to bisulphite treatment. This deaminates cytosine to uracil in single-stranded DNA but does not deaminate 5-methyl cytosine. PCR, cloning and sequencing revealed the methylation pattern of CpG doublets in the promoter region of the APRT− gene, whereas the active APRT gene had nonmethylated DNA. CHO strain K1, which has two copies of the APRT+ gene, could also be silenced by the same procedure but at a lower frequency. The availability of the 5-methyl dCTP-induced silencing, 5-aza-CR and a standard mutagen, ethyl methane sulphonate, makes it possible to follow concomitantly the inheritance of active, mutant or silenced gene copies. This analysis demonstrates “dual inheritance” at the APRT locus in CHO cells.

scholarly journals Order of intron removal during splicing of endogenous adenine phosphoribosyltransferase and dihydrofolate reductase pre-mRNA.

1993 ◽  
Vol 13 (10) ◽  
pp. 6211-6222 ◽  
Author(s):  
O Kessler ◽  
Y Jiang ◽  
L A Chasin
Keyword(s):  
Dihydrofolate Reductase ◽  
Chinese Hamster Ovary ◽  
Half Life ◽  
Chinese Hamster Ovary Cells ◽  
Chinese Hamster ◽  
Pairwise Comparison ◽  
Adenine Phosphoribosyltransferase ◽  
Ovary Cells ◽  
Intron 1

Using a strategy based on reverse transcription and the polymerase chain reaction, we have determined the order of splicing of the four introns of the endogenous adenine phosphoribosyltransferase (aprt) gene in Chinese hamster ovary cells. The method involves a pairwise comparison of molecules that retain one intron and have either retained or spliced another intron(s). A highly preferred order of removal was found: intron 3 > 2 > 4 = 1. This order did not represent a linear progression from one end of the transcript to the other, nor did it correlate with the conformity of the splice site sequences to the consensus sequences or to the calculated energy of duplex formation with U1 small nuclear RNA. By using actinomycin D to inhibit RNA synthesis, the in vivo rate of the first step in splicing was estimated for all four introns; a half-life of 6 min was found for introns 2, 3, and 4. Intron 1 was spliced more slowly, with a 12-min half-life. A substantial amount of RNA that retained intron 1 as the sole intron was exported to the cytoplasm. In the course of these experiments, we also determined that intron 3, but not intron 4, is spliced before 3'-end formation is complete, probably on nascent transcripts. This result is consistent with the idea that polyadenylation is required for splicing of the 3'-most intron. We applied a similar strategy to determine the last intron to be spliced in a very large transcript, that of the endogenous dihydrofolate reductase (dhfr) gene in Chinese hamster ovary cells (25 kb). Here again, intron 1 was the last intron to be spliced.

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