scholarly journals Complete Genome Sequence of Mycobacterium avium subsp. paratuberculosis Strain 42-13-1, Isolated in Japan

2021 ◽  
Vol 10 (15) ◽  
Author(s):  
Yuichi Ueno ◽  
Yohsuke Ogawa ◽  
Yuji Takamura ◽  
Reiko Nagata ◽  
Satoko Kawaji ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Mycobacterium Avium ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Chronic Diarrhea ◽  
Mycobacterium Avium Subsp ◽  
Hybrid Assembly ◽  
Short Read ◽  
Content Type ◽  
Mycobacterium Avium Subsp Paratuberculosis

ABSTRACT Here, we report the complete genome sequence of Mycobacterium avium subsp. paratuberculosis strain 42-13-1, isolated from cattle presenting with chronic diarrhea caused by Johne’s disease in Japan, which was assembled via long- and short-read hybrid assembly.

scholarly journals Complete Genome Sequence of the Telford Type S Strain of Mycobacterium avium subsp. paratuberculosis

2019 ◽  
Vol 8 (11) ◽  
Author(s):  
Rudiger Brauning ◽  
Karren Plain ◽  
Milan Gautam ◽  
Tonia Russell ◽  
C. Carolina Correa ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Mycobacterium Avium ◽  
Causative Agent ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Johne's Disease ◽  
Johne’S Disease ◽  
Mycobacterium Avium Subsp ◽  
Content Type ◽  
Mycobacterium Avium Subsp Paratuberculosis

Mycobacterium avium subsp. paratuberculosis is the causative agent of Johne’s disease (JD).

scholarly journals Complete Genome Sequence of a Type III Ovine Strain of Mycobacterium avium subsp. paratuberculosis

2021 ◽  
Vol 10 (10) ◽  
Author(s):  
John P. Bannantine ◽  
Darrell O. Bayles ◽  
Franck Biet
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Mycobacterium Avium ◽  
Plasmid Dna ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Mycobacterium Avium Subsp ◽  
Content Type ◽  
Type Iii ◽  
Mycobacterium Avium Subsp Paratuberculosis

ABSTRACT The complete genome sequence of a type III strain of Mycobacterium avium subsp. paratuberculosis was determined. The genome size for this pathogen of sheep is 4,895,755 bp with no plasmid DNA. The chromosome contains 19 copies of the hallmark IS900 element, which is routinely used to identify this subspecies.

scholarly journals Complete Genome Sequence and Manual Reannotation of Mycobacterium avium subsp. paratuberculosis Strain DSM 44135

2020 ◽  
Vol 9 (33) ◽  
Author(s):  
Ralph Goethe ◽  
Tina Basler ◽  
Thorsten Meissner ◽  
Elke Goethe ◽  
Cathrin Spröer ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Mycobacterium Avium ◽  
Dairy Cow ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Reference Strain ◽  
Mycobacterium Avium Subsp ◽  
Northern Germany ◽  
Content Type ◽  
Mycobacterium Avium Subsp Paratuberculosis

ABSTRACT Here, we report the complete genome sequence of the Mycobacterium avium subsp. paratuberculosis reference strain DSM 44135, amended with a manual genome reannotation. The strain was originally described as M. paratuberculosis strain 6783. It was isolated from feces from a dairy cow in northern Germany.

scholarly journals Complete Genome Sequence of Mycobacterium avium subsp. hominissuis Strain JP-H-1, Isolated from an Equine Abortion Case in Japan

2019 ◽  
Vol 8 (48) ◽  
Author(s):  
Yuta Kinoshita ◽  
Hidekazu Niwa ◽  
Eri Uchida-Fujii ◽  
Toshio Nukada
Keyword(s):  
Genome Sequence ◽  
Mycobacterium Avium ◽  
Genome Assembly ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Mycobacterium Avium Subsp ◽  
Circular Chromosome ◽  
Content Type ◽  
Equine Abortion ◽  
Abortion Case

Here, we describe the complete genome assembly of Mycobacterium avium subsp. hominissuis strain JP-H-1, collected from an equine abortion case in Japan. JP-H-1 has a 5,491,452-bp circular chromosome and 3 plasmids.

scholarly journals Complete Genome Sequence of Mycobacterium avium subsp. avium Chester (DSM 44156)

2020 ◽  
Vol 9 (7) ◽  
Author(s):  
Ralph Goethe ◽  
Kristin Laarmann ◽  
Cathrin Spröer ◽  
Boyke Bunk
Keyword(s):  
Genome Sequence ◽  
Mycobacterium Avium ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Reference Strain ◽  
Mycobacterium Avium Subsp ◽  
Content Type

Here, we announce the complete genome sequence of the Mycobacterium avium subsp. avium strain DSM 44156, also deposited as ATCC 25291 and TMC 724. The reference strain was originally described as a serotype 2 strain isolated from a hen by F. D. Chester in 1901.

scholarly journals Complete Genome Sequence of JII-1961, a Bovine Mycobacterium avium subsp. paratuberculosis Field Isolate from Germany

2017 ◽  
Vol 5 (34) ◽  
Author(s):  
Petra Möbius ◽  
Gabriele Nordsiek ◽  
Martin Hölzer ◽  
Michael Jarek ◽  
Manja Marz ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Mycobacterium Avium ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Field Isolate ◽  
Human Beings ◽  
Content Type ◽  
Milk Products ◽  
Mycobacterium Avium Subsp Paratuberculosis ◽  
Type Strains

ABSTRACT Mycobacterium avium subsp. paratuberculosis causes Johne’s disease in ruminants and was also detected in nonruminant species, including human beings, and in milk products. We announce here the 4.829-Mb complete genome sequence of the cattle-type strain JII-1961 from Germany, which is very similar to cattle-type strains recovered from different continents.

scholarly journals Complete Genome Sequence of Rubrobacter xylanophilus Strain AA3-22, Isolated from Arima Onsen in Japan

2019 ◽  
Vol 8 (34) ◽  
Author(s):  
Natsuki Tomariguchi ◽  
Kentaro Miyazaki
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Hot Spring ◽  
Sequencing Data ◽  
Short Read ◽  
Content Type ◽  
Short Read Sequencing ◽  
Oxford Nanopore ◽  
Long Read

Rubrobacter xylanophilus strain AA3-22, belonging to the phylum Actinobacteria, was isolated from nonvolcanic Arima Onsen (hot spring) in Japan. Here, we report the complete genome sequence of this organism, which was obtained by combining Oxford Nanopore long-read and Illumina short-read sequencing data.

scholarly journals Chromosome-Scale Assembly of the Complete Genome Sequence of Leishmania (Mundinia) orientalis, Isolate LSCM4, Strain LV768

2021 ◽  
Vol 10 (36) ◽  
Author(s):  
Hatim Almutairi ◽  
Michael D. Urbaniak ◽  
Michelle D. Bates ◽  
Narissara Jariyapan ◽  
Waleed S. Al-Salem ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Short Read ◽  
Content Type ◽  
Long Read ◽  
Kinetoplastid Parasite

Leishmania (Mundinia) orientalis is a kinetoplastid parasite first isolated in 2014 in Thailand. We report the complete genome sequence of L. ( M. ) orientalis , sequenced using combined short-read and long-read technologies. This will facilitate greater understanding of this novel pathogen and its relationship to other members of the subgenus Mundinia .

scholarly journals Complete Genome Sequence of Staphylococcus epidermidis ATCC 12228 Chromosome and Plasmids, Generated by Long-Read Sequencing

2017 ◽  
Vol 5 (36) ◽  
Author(s):  
Kyle S. MacLea ◽  
Ariel M. Trachtenberg
Keyword(s):  
Genome Sequence ◽  
Staphylococcus Epidermidis ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Short Read ◽  
Content Type ◽  
Long Read ◽  
Short Read Sequence

ABSTRACT Staphylococcus epidermidis ATCC 12228 was sequenced using a long-read method to generate a complete genome sequence, including some plasmid sequences. Some differences from the previously generated short-read sequence of this nonpathogenic and non-biofilm-forming strain were noted. The assembly size was 2,570,371 bp with a total G+C% content of 32.08%.

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