scholarly journals Draft Genome Sequences of Three Amino Acid-Secreting Lactococcus lactis Strains

2020 ◽  
Vol 9 (16) ◽  
Author(s):  
Jhonatan A. Hernandez-Valdes ◽  
Anne de Jong ◽  
Jan Kok ◽  
Oscar P. Kuipers

Three Lactococcus lactis strains with the ability to secrete various amino acids (leucine, isoleucine, methionine, valine, glutamic acid, and histidine) were sequenced in order to identify the mechanisms involved in the secretion. Amino acids contribute to flavor formation; therefore, bacterial strains with this ability are relevant for the food industry.

2015 ◽  
Vol 198 (3) ◽  
pp. 477-485 ◽  
Author(s):  
Faizah Fulyani ◽  
Gea K. Schuurman-Wolters ◽  
Dirk-Jan Slotboom ◽  
Bert Poolman

ABSTRACTThe GlnPQ transporter fromLactococcus lactishas the remarkable feature of having two substrate-binding domains (SBDs) fused to the N terminus of the transmembrane domain (TMD), and thus four SBDs are present in the homodimeric complex. Although X-ray structures and ligand binding data are available for both SBDs, little is known of how different amino acids compete with each other for transport via GlnPQ. Here we show GlnPQ has a broader substrate specificity than previously thought, with the ability to take up asparagine, glutamine, and glutamic acid, albeit via different routes and with different affinities. Asparagine and glutamine compete with each other at the level of binding to SBD1 and SBD2 (with differences in dissociation constant), but at the same time SBD1 and SBD2 compete with each other at the level of interaction with the translocator domain (with differences in affinity constant and rate of transport). Although glutamine transport via SBD1 is outcompeted by physiological concentrations of asparagine, SBD2 ensures high rates of import of the essential amino acid glutamine. Taken together, this study demonstrates that even in the presence of competing asparagine concentrations, GlnPQ has a high capacity to transport glutamine, which matches the high needs of the cell for glutamine and glutamate.IMPORTANCEGlnPQ is an ATP-binding cassette (ABC) transporter for glutamine, glutamic acid, and asparagine. The system is essential in various Gram-positive bacteria, includingL. lactisand several pathogens. Here we show how the amino acids compete with each other for binding to the multiple SBDs of GlnPQ and how these SBDs compete with each other for substrate delivery to the transporter. Overall, our results show that GlnPQ has evolved to transport diverse substrates via different paths and to optimally acquire the abundant and essential amino acid glutamine.


2019 ◽  
Vol 8 (34) ◽  
Author(s):  
Samat Amat ◽  
Devin B. Holman ◽  
Edouard Timsit ◽  
Katherine E. Gzyl ◽  
Trevor W. Alexander

Here, we present the first draft genome sequences of 14 bacterial strains isolated from the nasopharynx of healthy feedlot cattle. These genomes are from 12 Lactobacillus isolates (L. amylovorus, L. buchneri, L. curvatus, and L. paracasei), 1 Enterococcus hirae isolate, and 1 Staphylococcus chromogenes isolate.


2017 ◽  
Vol 5 (5) ◽  
Author(s):  
Marie-Hélène Guinebretière ◽  
Valentin Loux ◽  
Véronique Martin ◽  
Pierre Nicolas ◽  
Vincent Sanchis ◽  
...  

ABSTRACT Bacteria from the Bacillus cereus group exhibit genetic and physiological diversity through different ecotypes. Here, we present the draft genome sequences of 20 bacterial strains belonging to the contrasted psychrotolerant and thermotolerant ecotypes.


2020 ◽  
Vol 9 (47) ◽  
Author(s):  
Esben Bragason ◽  
Christina Aaby Svendsen ◽  
Mitiku Eshetu Guya ◽  
Tesfemariam Berhe ◽  
Egon Bech Hansen

ABSTRACT The genome sequences of four Lactococcus lactis strains isolated from fermented camel milk were sequenced using paired-end Illumina MiSeq reads. The genome size of each strain was about 2.6 Mb, and three of the strains were annotated with tet(S) coding for tetracycline resistance.


2020 ◽  
Vol 9 (37) ◽  
Author(s):  
Eman M. Khalaf ◽  
Manish N. Raizada

ABSTRACT We announce the draft genome sequences of six strains of Lactococcus lactis (EKM101L, EKM102L, EKM201L, EKM203L, EKM501L, and EKM502L). These candidate plant probiotics were isolated from surface-sterilized seeds of Cucumis sativus L. (cucumber), Cucumis melo L. (cantaloupe), and Cucurbita pepo var. turbinate (acorn squash). They display beneficial activities, including biocontrol.


2020 ◽  
Vol 9 (32) ◽  
Author(s):  
Hideo Kawaguchi ◽  
Takashi Sazuka ◽  
Akihiko Kondo

ABSTRACT We determined the complete and draft genome sequences of two strains of Corynebacterium glutamicum and revealed their genomic islands (GEIs). The two strains, ATCC 21799 and ATCC 31831, were found to have 3,079 and 3,109 coding sequences, respectively, with 13 GEIs each not present in the reference strain, ATCC 13032.


2014 ◽  
Vol 197 (5) ◽  
pp. 951-958 ◽  
Author(s):  
Elke E. E. Noens ◽  
Juke S. Lolkema

TheserP1andserP2genes found adjacently on the chromosome ofLactococcus lactisstrains encode two members of the amino acid-polyamine-organocation (APC) superfamily of secondary transporters that share 61% sequence identity. SerP1 transportsl-serine,l-threonine, andl-cysteine with high affinity. Affinity constants (Km) are in the 20 to 40 μM range. SerP2 is adl-alanine/dl-serine/glycine transporter. The preferred substrate appears to bedl-alanine for which the affinities were found to be 38 and 20 μM for thedandlisomers, respectively. The common substratel-serine is a high-affinity substrate of SerP1 and a low-affinity substrate of SerP2 with affinity constants of 18 and 356 μM, respectively. Growth experiments demonstrate that SerP1 is the mainl-serine transporter responsible for optimal growth in media containing free amino acids as the sole source of amino acids. SerP2 is able to replace SerP1 in this role only in medium lacking the high-affinity substratesl-alanine and glycine. SerP2 plays an adverse role for the cell by being solely responsible for the uptake of toxicd-serine. The main function of SerP2 is in cell wall biosynthesis through the uptake ofd-alanine, an essential precursor in peptidoglycan synthesis. SerP2 has overlapping substrate specificity and shares 42% sequence identity with CycA ofEscherichia coli, a transporter whose involvement in peptidoglycan synthesis is well established. No evidence was obtained for a role of SerP1 and SerP2 in the excretion of excess amino acids during growth ofL. lactison protein/peptide-rich media.


2017 ◽  
Vol 5 (11) ◽  
Author(s):  
Michiel Wels ◽  
Lennart Backus ◽  
Jos Boekhorst ◽  
Annereinou Dijkstra ◽  
Marke Beerthuyzen ◽  
...  

ABSTRACT The lactic acid bacterium Lactococcus lactis is widely used for the fermentation of dairy products. Here, we present the draft genome sequences of 11 L. lactis subsp. cremoris strains isolated from different environments.


2020 ◽  
Vol 9 (2) ◽  
Author(s):  
Ian Davis ◽  
Joseph Sevigny ◽  
Victoria Kleiner ◽  
Kelsey Mercurio ◽  
Céline Pesce ◽  
...  

Here, we report the draft genome sequences obtained for 10 bacterial strains isolated from root nodules of Alnus trees. These members of the nodule microbiome were sequenced to determine their potential functional roles in plant health. The selected strains belong to the genera Rhodococcus, Kocuria, Rothia, Herbaspirillum, Streptomyces, and Thiopseudomonas.


2020 ◽  
Vol 9 (2) ◽  
Author(s):  
Subhajit Sen ◽  
Tilak Saha ◽  
Sabyasachi Bhattacharya ◽  
Nidhi ◽  
Nibendu Mondal ◽  
...  

Two novel boron-tolerant, arsenic-resistant, Gram-positive bacterial strains, Lysinibacillus sp. OL1 and Enterococcus sp. OL5, were isolated from boron fertilizer-amended cauliflower plantation field soils in India. Here, we report the draft genome sequences of OL1 (4.87 Mb) and OL5 (3.93 Mb) to explore the intricacies of boron tolerance in bacteria.


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