scholarly journals Complete Genome Sequence of a Novel Genotype of Pepper Mild Mottle Virus Infecting Pepper in Chile

2020 ◽  
Vol 9 (47) ◽  
Author(s):  
Sven M. H. Berendsen ◽  
Willem E. W. Schravesande
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Sanger Sequencing ◽  
Mottle Virus ◽  
Pepper Mild Mottle Virus ◽  
Oxford Nanopore ◽  
Novel Genotype ◽  
Oxford Nanopore Technologies ◽  
Sequence Identities

ABSTRACT The complete genome sequence of a Pepper mild mottle virus (PMMoV) found on pepper seeds produced in Chile in 2019 was determined using Oxford Nanopore Technologies and Sanger sequencing. The low nucleotide sequence identities (between 89% and 91%) to known PMMoV isolates suggested that this isolate belongs to a novel genotype.

scholarly journals Complete Genome Sequence of Pasteurella multocida HuN001, a Capsular Type A Strain from a Human

2021 ◽  
Vol 10 (26) ◽  
Author(s):  
Lin Lin ◽  
Chunhui Li ◽  
Fei Wang ◽  
Xueying Wang ◽  
Yue Zhang ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Pasteurella Multocida ◽  
Sputum Sample ◽  
Capsular Type ◽  
Circular Chromosome ◽  
Content Type ◽  
Oxford Nanopore ◽  
Oxford Nanopore Technologies

Here, we report the complete genome sequence of clinical Pasteurella multocida strain HuN001, which was cultured from a sputum sample from a patient with pneumonia. Oxford Nanopore Technologies sequencing provided a complete genome sequence of P. multocida HuN001, which contains a 2,287,216-bp circular chromosome with an average G+C content of 40.33%.

scholarly journals Complete Genome Sequence of a Canadian Klebsiella michiganensis Strain, Obtained Using Oxford Nanopore Technologies Sequencing

2020 ◽  
Vol 9 (46) ◽  
Author(s):  
Mingsong Kang ◽  
John Chmara ◽  
Marc-Olivier Duceppe ◽  
Beverley Phipps-Todd ◽  
Hongsheng Huang
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Opportunistic Pathogen ◽  
Treatment Facility ◽  
Content Type ◽  
Hospital Acquired Infections ◽  
Oxford Nanopore ◽  
Hospital Acquired ◽  
Oxford Nanopore Technologies

ABSTRACT Klebsiella michiganensis is a Gram-negative opportunistic pathogen that is associated with many hospital-acquired infections in humans. Here, we report the complete genome sequence of a K. michiganensis strain isolated from a Canadian wastewater treatment facility.

scholarly journals Complete Genome Sequence of a Pepper mild mottle virus Isolate from Northeast China

2018 ◽  
Vol 6 (9) ◽  
Author(s):  
Man Yu ◽  
Tao Zhou ◽  
Yuanhua Wu ◽  
Mengnan An
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Northeast China ◽  
Virus Isolate ◽  
Mottle Virus ◽  
Rt Pcr ◽  
Pepper Mild Mottle Virus ◽  
Reverse Transcription Pcr ◽  
Rapid Amplification

ABSTRACT The complete genome sequence of a Pepper mild mottle virus (PMMoV) isolate obtained from Northeast China was determined by reverse transcription-PCR (RT-PCR) and rapid amplification of cDNA ends (RACE). Phylogenetic analysis showed that the virus isolate is closely related to Japanese, Chinese, Spanish, and U.S. isolates.

scholarly journals First Complete Genome Sequence of Pepper mild mottle virus from Chili Pepper in the United States

2018 ◽  
Vol 6 (18) ◽  
pp. e00331-18 ◽  
Author(s):  
Kathryn Secrist ◽  
Akhtar Ali
Keyword(s):  
United States ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Growing Season ◽  
The United States ◽  
Chili Pepper ◽  
Mottle Virus ◽  
Pepper Mild Mottle Virus ◽  
Content Type

ABSTRACT Pepper mild mottle virus (PMMoV) was first reported as a latent strain in the United States and then later reported in other countries around the world. Here, we report the first complete genome sequence of a PMMoV isolate (BL14) that was collected from chili pepper during the 2014 growing season in Oklahoma.

scholarly journals Complete Genome Sequence of a Tomato Isolate of Parietaria Mottle Virus from Italy

2015 ◽  
Vol 3 (6) ◽  
Author(s):  
Carolina Martínez ◽  
José Aramburu ◽  
Luis Rubio ◽  
Luis Galipienso
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Sanger Sequencing ◽  
Mottle Virus ◽  
Nucleotide Identity ◽  
Genome Sequences ◽  
Tomato Plants ◽  
Tomato Isolate

We report here the complete genome sequence of isolate T32 of parietaria mottle virus (PMoV) infecting tomato plants in Turin, Italy, obtained by Sanger sequencing. T32 shares 90.48 to 96.69% nucleotide identity with other two PoMV isolates, CR8 and Pe1, respectively, whose complete genome sequences are available.

scholarly journals Complete Genome Sequence of Neisseria gonorrhoeae Multilocus Sequence Type ST7363 Isolated from Thailand

2021 ◽  
Vol 10 (41) ◽  
Author(s):  
Thitima Cherdtrakulkiat ◽  
Thidathip Wongsurawat ◽  
Piroon Jenjaroenpun ◽  
Sawannee Sutheeworapong ◽  
Wanna Leelawiwat ◽  
...  
Keyword(s):  
Neisseria Gonorrhoeae ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Sequence Type ◽  
Circular Chromosome ◽  
Content Type ◽  
Oxford Nanopore ◽  
Siriraj Hospital ◽  
Oxford Nanopore Technologies

A Neisseria gonorrhoeae multilocus sequence type (MLST) ST7363 strain was isolated from a patient at the Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand, in 2010 and completely sequenced. This strain is susceptible to ceftriaxone and cefixime. A complete circular chromosome and circular plasmids were assembled from combined Oxford Nanopore Technologies (ONT) and Illumina sequencing.

Complete genome sequence supports Bell pepper mottle virus as a species of the genus Tobamovirus

2007 ◽  
Vol 152 (7) ◽  
pp. 1401-1407 ◽  
Author(s):  
M. J. Rhie ◽  
B. E. Min ◽  
J. S. Hong ◽  
Y. S. Song ◽  
K. H. Ryu
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Bell Pepper ◽  
Mottle Virus ◽  
Pepper Mottle Virus

scholarly journals Complete Genome Sequence of Rubrobacter xylanophilus Strain AA3-22, Isolated from Arima Onsen in Japan

2019 ◽  
Vol 8 (34) ◽  
Author(s):  
Natsuki Tomariguchi ◽  
Kentaro Miyazaki
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Hot Spring ◽  
Sequencing Data ◽  
Short Read ◽  
Content Type ◽  
Short Read Sequencing ◽  
Oxford Nanopore ◽  
Long Read

Rubrobacter xylanophilus strain AA3-22, belonging to the phylum Actinobacteria, was isolated from nonvolcanic Arima Onsen (hot spring) in Japan. Here, we report the complete genome sequence of this organism, which was obtained by combining Oxford Nanopore long-read and Illumina short-read sequencing data.

scholarly journals First Genome Sequence of Wild Onion Symptomless Virus, a Novel Member of Potyvirus in the Turnip Mosaic Virus Phylogenetic Group

2016 ◽  
Vol 4 (4) ◽  
Author(s):  
Kazusato Ohshima ◽  
Savas Korkmaz ◽  
Shinichiro Mitoma ◽  
Rei Nomiyama ◽  
Yuki Honda
Keyword(s):  
New Species ◽  
Nucleotide Sequence ◽  
Mosaic Virus ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Turnip Mosaic Virus ◽  
Phylogenetic Group ◽  
A New Species ◽  
Sequence Identities

The nearly complete genome sequence of a new species of potyvirus was obtained from the symptomless wild onion ( Allium sp.) in Turkey. This virus has less than 67% nucleotide sequence identities over the polyprotein to other known potyviruses. We propose the name wild onion symptomless virus for this novel potyvirus.

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